BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0687100 Os06g0687100|J075119O05
(98 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os06g0687100 Ras GTPase family protein 166 3e-42
Os03g0666500 Similar to Ras-related protein RHA1 119 4e-28
Os12g0631100 Ras small GTPase, Ras type family protein 117 1e-27
Os03g0151900 Similar to Small GTP-binding protein 91 2e-19
Os10g0441800 Similar to RAB5B 91 2e-19
Os05g0341600 Similar to Ras-related protein Rab-21 79 5e-16
Os07g0634200 Similar to Rab GTP-binding protein Rab11a 78 1e-15
Os05g0280200 Similar to Ras-related protein Rab11A 74 2e-14
Os10g0377400 Similar to Ras-related protein Rab11D 74 2e-14
Os01g0848700 Similar to Ras-related protein Rab11C 74 3e-14
Os03g0823700 Similar to Ras-related protein Rab11C 72 6e-14
Os07g0496000 Similar to Nt-rab6 protein 72 1e-13
AK062838 72 1e-13
Os01g0179700 Similar to GTP-binding protein YPTM2 72 1e-13
Os02g0653800 Similar to GTP-binding protein 72 1e-13
Os09g0327100 Similar to GTP-binding protein 72 1e-13
Os01g0667600 Similar to GTP-binding protein 71 1e-13
Os05g0564400 Similar to GTP-binding protein 71 2e-13
AK060839 71 2e-13
Os05g0516800 Similar to Ras-related protein RIC2 71 2e-13
AK060246 71 2e-13
Os06g0551400 Ras-related protein RIC2 70 2e-13
AF327517 70 2e-13
Os01g0750000 Similar to Ras-related protein RIC2 70 3e-13
Os01g0558600 Ras-related protein RIC1 70 4e-13
Os03g0843100 Ras GTPase family protein 69 5e-13
Os05g0105100 Similar to Small GTPase rab11-related 69 1e-12
Os09g0527600 Similar to GTP-binding protein (Fragment) 68 2e-12
Os01g0227300 Similar to RAB7D 67 4e-12
Os05g0536900 Similar to RAB7A 67 4e-12
Os04g0470100 Similar to Small GTP binding protein Rab2 66 5e-12
Os01g0714900 Similar to RAB7A 66 5e-12
Os07g0239400 Similar to Ethylene-responsive small GTP-bindi... 66 6e-12
Os05g0461300 Similar to RAB8C 66 6e-12
Os03g0819900 Similar to RAB8C 66 6e-12
Os06g0714600 Ras GTPase family protein 65 2e-11
Os05g0516600 Small GTP binding protein 64 2e-11
Os08g0525000 Ras GTPase family protein 64 3e-11
>Os06g0687100 Ras GTPase family protein
Length = 98
Score = 166 bits (421), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 79/86 (91%), Positives = 79/86 (91%)
Query: 1 MLSRPSWWVLLGDLGAGKTSIVVRFAKGLYYDCQESTIGAAFFSQVLIMDEATVKLDIWD 60
MLSRPSWWVLLGDLGAGKTSIVVRFAKGLYYDCQESTIGAAFFSQVLIMDEATVKLDIWD
Sbjct: 1 MLSRPSWWVLLGDLGAGKTSIVVRFAKGLYYDCQESTIGAAFFSQVLIMDEATVKLDIWD 60
Query: 61 TAGQERYHSLAPMYYRGXXXXXXXYD 86
TAGQERYHSLAPMYYRG YD
Sbjct: 61 TAGQERYHSLAPMYYRGAAAAVVVYD 86
>Os03g0666500 Similar to Ras-related protein RHA1
Length = 203
Score = 119 bits (299), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 54/83 (65%), Positives = 65/83 (78%)
Query: 4 RPSWWVLLGDLGAGKTSIVVRFAKGLYYDCQESTIGAAFFSQVLIMDEATVKLDIWDTAG 63
R + VLLGD+GAGK+S+V+RF KG + + QESTIGAAFFSQ L +++ TVK +IWDTAG
Sbjct: 10 RNAKLVLLGDVGAGKSSLVLRFVKGQFVEFQESTIGAAFFSQTLAVNDETVKFEIWDTAG 69
Query: 64 QERYHSLAPMYYRGXXXXXXXYD 86
QERYHSLAPMYYRG YD
Sbjct: 70 QERYHSLAPMYYRGAAAAIVVYD 92
>Os12g0631100 Ras small GTPase, Ras type family protein
Length = 203
Score = 117 bits (294), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 53/83 (63%), Positives = 64/83 (77%)
Query: 4 RPSWWVLLGDLGAGKTSIVVRFAKGLYYDCQESTIGAAFFSQVLIMDEATVKLDIWDTAG 63
R + VLLGD+G GK+S+V+RF KG + + QESTIGAAFFSQ L +++ TVK +IWDTAG
Sbjct: 10 RNAKLVLLGDVGTGKSSLVLRFVKGQFVEFQESTIGAAFFSQTLAVNDETVKFEIWDTAG 69
Query: 64 QERYHSLAPMYYRGXXXXXXXYD 86
QERYHSLAPMYYRG YD
Sbjct: 70 QERYHSLAPMYYRGAAAAIVVYD 92
>Os03g0151900 Similar to Small GTP-binding protein
Length = 199
Score = 90.5 bits (223), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 42/79 (53%), Positives = 56/79 (70%), Gaps = 1/79 (1%)
Query: 9 VLLGDLGAGKTSIVVRFAKGLYYDCQESTIGAAFFSQVLIMDEAT-VKLDIWDTAGQERY 67
VLLGD G GK+ IV+RF +G + + T+GA+F SQ L ++++T VK +IWDTAGQERY
Sbjct: 35 VLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTLALEDSTIVKFEIWDTAGQERY 94
Query: 68 HSLAPMYYRGXXXXXXXYD 86
+LAP+YYRG YD
Sbjct: 95 AALAPLYYRGAAAAVVVYD 113
>Os10g0441800 Similar to RAB5B
Length = 250
Score = 90.5 bits (223), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 43/79 (54%), Positives = 54/79 (68%), Gaps = 1/79 (1%)
Query: 9 VLLGDLGAGKTSIVVRFAKGLYYDCQESTIGAAFFSQVLIM-DEATVKLDIWDTAGQERY 67
VLLGD G GK+ IV+RF +G + + T+GA+F SQ L + D TVK +IWDTAGQERY
Sbjct: 86 VLLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTLALEDSTTVKFEIWDTAGQERY 145
Query: 68 HSLAPMYYRGXXXXXXXYD 86
+LAP+YYRG YD
Sbjct: 146 AALAPLYYRGAGAAIVVYD 164
>Os05g0341600 Similar to Ras-related protein Rab-21
Length = 212
Score = 79.3 bits (194), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 34/78 (43%), Positives = 53/78 (67%)
Query: 9 VLLGDLGAGKTSIVVRFAKGLYYDCQESTIGAAFFSQVLIMDEATVKLDIWDTAGQERYH 68
VLLGD GKTS+V+R+ ++ D QE+T+ A++ ++ L+++ + L IWDTAGQE++H
Sbjct: 18 VLLGDGRVGKTSLVLRYVNDVFSDKQEATVQASYLTKRLVVEGVPITLSIWDTAGQEKFH 77
Query: 69 SLAPMYYRGXXXXXXXYD 86
+L P+YYR YD
Sbjct: 78 ALGPIYYRDADAALLVYD 95
>Os07g0634200 Similar to Rab GTP-binding protein Rab11a
Length = 220
Score = 77.8 bits (190), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 35/78 (44%), Positives = 49/78 (62%)
Query: 9 VLLGDLGAGKTSIVVRFAKGLYYDCQESTIGAAFFSQVLIMDEATVKLDIWDTAGQERYH 68
VLLGD GK++++ RFA+ +Y +STIG F +Q L++D +K IWDTAGQER+
Sbjct: 18 VLLGDSSVGKSNLLARFARNEFYPNSKSTIGVEFQTQKLVIDGKEIKAQIWDTAGQERFR 77
Query: 69 SLAPMYYRGXXXXXXXYD 86
++ YYRG YD
Sbjct: 78 AVTSAYYRGAVGALLVYD 95
>Os05g0280200 Similar to Ras-related protein Rab11A
Length = 217
Score = 73.9 bits (180), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 35/78 (44%), Positives = 48/78 (61%)
Query: 9 VLLGDLGAGKTSIVVRFAKGLYYDCQESTIGAAFFSQVLIMDEATVKLDIWDTAGQERYH 68
VL+GD G GK++I+ RF + + +STIG F ++ L M+ T+K IWDTAGQERY
Sbjct: 16 VLIGDSGVGKSNILSRFTRNHFSLDSKSTIGVEFATKSLQMEGKTIKAQIWDTAGQERYR 75
Query: 69 SLAPMYYRGXXXXXXXYD 86
++ YYRG YD
Sbjct: 76 AITSAYYRGAVGALLVYD 93
>Os10g0377400 Similar to Ras-related protein Rab11D
Length = 216
Score = 73.9 bits (180), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 34/78 (43%), Positives = 48/78 (61%)
Query: 9 VLLGDLGAGKTSIVVRFAKGLYYDCQESTIGAAFFSQVLIMDEATVKLDIWDTAGQERYH 68
VL+GD GK+ I+ RFA+ + ++TIG F ++ L++D +VK IWDTAGQERY
Sbjct: 14 VLIGDSAVGKSQILARFARNEFSIDSKATIGVEFQTRTLLIDHKSVKAQIWDTAGQERYR 73
Query: 69 SLAPMYYRGXXXXXXXYD 86
++ YYRG YD
Sbjct: 74 AVTSAYYRGALGALLVYD 91
>Os01g0848700 Similar to Ras-related protein Rab11C
Length = 216
Score = 73.6 bits (179), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 33/78 (42%), Positives = 49/78 (62%)
Query: 9 VLLGDLGAGKTSIVVRFAKGLYYDCQESTIGAAFFSQVLIMDEATVKLDIWDTAGQERYH 68
VL+GD G GK++I+ RF + ++ +STIG F ++ L ++ T+K IWDTAGQERY
Sbjct: 16 VLIGDSGVGKSNILSRFTRNEFFLESKSTIGVEFATRTLQIEGKTIKAQIWDTAGQERYR 75
Query: 69 SLAPMYYRGXXXXXXXYD 86
++ YYRG +D
Sbjct: 76 AITSAYYRGAVGALLVFD 93
>Os03g0823700 Similar to Ras-related protein Rab11C
Length = 215
Score = 72.4 bits (176), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 34/78 (43%), Positives = 48/78 (61%)
Query: 9 VLLGDLGAGKTSIVVRFAKGLYYDCQESTIGAAFFSQVLIMDEATVKLDIWDTAGQERYH 68
VL+GD G GK++I+ RF + + +STIG F ++ L ++ T+K IWDTAGQERY
Sbjct: 16 VLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQIEGQTIKAQIWDTAGQERYR 75
Query: 69 SLAPMYYRGXXXXXXXYD 86
++ YYRG YD
Sbjct: 76 AITSAYYRGAVGALLVYD 93
>Os07g0496000 Similar to Nt-rab6 protein
Length = 208
Score = 71.6 bits (174), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 33/78 (42%), Positives = 47/78 (60%)
Query: 9 VLLGDLGAGKTSIVVRFAKGLYYDCQESTIGAAFFSQVLIMDEATVKLDIWDTAGQERYH 68
V LGD GKTSI+ RF + + ++TIG F S+ + +++ TV+L +WDTAGQER+
Sbjct: 13 VFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFR 72
Query: 69 SLAPMYYRGXXXXXXXYD 86
SL P Y R +D
Sbjct: 73 SLIPSYIRDSSVAVIVFD 90
>AK062838
Length = 201
Score = 71.6 bits (174), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 34/78 (43%), Positives = 48/78 (61%)
Query: 9 VLLGDLGAGKTSIVVRFAKGLYYDCQESTIGAAFFSQVLIMDEATVKLDIWDTAGQERYH 68
+L+GD G GK+ +++RFA Y + STIG F + + +D T+KL IWDTAGQER+
Sbjct: 12 LLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFR 71
Query: 69 SLAPMYYRGXXXXXXXYD 86
++ YYRG YD
Sbjct: 72 TITSSYYRGAHGIIVVYD 89
>Os01g0179700 Similar to GTP-binding protein YPTM2
Length = 203
Score = 71.6 bits (174), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 35/78 (44%), Positives = 47/78 (60%)
Query: 9 VLLGDLGAGKTSIVVRFAKGLYYDCQESTIGAAFFSQVLIMDEATVKLDIWDTAGQERYH 68
+L+GD G GK+ +++RFA Y D STIG F + + D T+KL IWDTAGQER+
Sbjct: 12 LLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFR 71
Query: 69 SLAPMYYRGXXXXXXXYD 86
++ YYRG YD
Sbjct: 72 TITSSYYRGAHGIIIVYD 89
>Os02g0653800 Similar to GTP-binding protein
Length = 203
Score = 71.6 bits (174), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 35/78 (44%), Positives = 47/78 (60%)
Query: 9 VLLGDLGAGKTSIVVRFAKGLYYDCQESTIGAAFFSQVLIMDEATVKLDIWDTAGQERYH 68
+L+GD G GK+ +++RFA Y D STIG F + + D T+KL IWDTAGQER+
Sbjct: 12 LLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFR 71
Query: 69 SLAPMYYRGXXXXXXXYD 86
++ YYRG YD
Sbjct: 72 TITSSYYRGAHGIIIVYD 89
>Os09g0327100 Similar to GTP-binding protein
Length = 216
Score = 71.6 bits (174), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 33/78 (42%), Positives = 48/78 (61%)
Query: 9 VLLGDLGAGKTSIVVRFAKGLYYDCQESTIGAAFFSQVLIMDEATVKLDIWDTAGQERYH 68
VL+GD G GK++++ RF + + +STIG F ++ + +D+ VK IWDTAGQERY
Sbjct: 16 VLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIRVDDKVVKAQIWDTAGQERYR 75
Query: 69 SLAPMYYRGXXXXXXXYD 86
++ YYRG YD
Sbjct: 76 AITSAYYRGAVGALVVYD 93
>Os01g0667600 Similar to GTP-binding protein
Length = 224
Score = 71.2 bits (173), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 34/78 (43%), Positives = 48/78 (61%)
Query: 9 VLLGDLGAGKTSIVVRFAKGLYYDCQESTIGAAFFSQVLIMDEATVKLDIWDTAGQERYH 68
VL+GD G GK++++ RFA+ + STIG F ++ + +D+ VK IWDTAGQERY
Sbjct: 23 VLIGDSGVGKSNLLSRFARDEFSLETRSTIGVEFATKTVRVDDRLVKAQIWDTAGQERYR 82
Query: 69 SLAPMYYRGXXXXXXXYD 86
++ YYRG YD
Sbjct: 83 AITSAYYRGAVGALVVYD 100
>Os05g0564400 Similar to GTP-binding protein
Length = 217
Score = 71.2 bits (173), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 33/78 (42%), Positives = 48/78 (61%)
Query: 9 VLLGDLGAGKTSIVVRFAKGLYYDCQESTIGAAFFSQVLIMDEATVKLDIWDTAGQERYH 68
VL+GD G GK++++ RF + + +STIG F ++ + +D+ VK IWDTAGQERY
Sbjct: 16 VLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIHVDDKVVKAQIWDTAGQERYR 75
Query: 69 SLAPMYYRGXXXXXXXYD 86
++ YYRG YD
Sbjct: 76 AITSAYYRGAVGALVVYD 93
>AK060839
Length = 209
Score = 71.2 bits (173), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 35/78 (44%), Positives = 46/78 (58%)
Query: 9 VLLGDLGAGKTSIVVRFAKGLYYDCQESTIGAAFFSQVLIMDEATVKLDIWDTAGQERYH 68
+L+GD GK+ ++RFA Y D STIG F + + MD T+KL IWDTAGQER+
Sbjct: 12 LLIGDSSVGKSCFLLRFADDSYVDSYISTIGVDFKIRTIEMDGKTIKLQIWDTAGQERFR 71
Query: 69 SLAPMYYRGXXXXXXXYD 86
++ YYRG YD
Sbjct: 72 TITSSYYRGAHGIIIVYD 89
>Os05g0516800 Similar to Ras-related protein RIC2
Length = 220
Score = 70.9 bits (172), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 34/78 (43%), Positives = 47/78 (60%)
Query: 9 VLLGDLGAGKTSIVVRFAKGLYYDCQESTIGAAFFSQVLIMDEATVKLDIWDTAGQERYH 68
VL+GD G GK++++ RF K + +STIG F ++ L +D +K IWDTAGQERY
Sbjct: 21 VLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSLQVDGKVIKAQIWDTAGQERYR 80
Query: 69 SLAPMYYRGXXXXXXXYD 86
++ YYRG YD
Sbjct: 81 AITSAYYRGAVGALLVYD 98
>AK060246
Length = 220
Score = 70.9 bits (172), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 34/78 (43%), Positives = 47/78 (60%)
Query: 9 VLLGDLGAGKTSIVVRFAKGLYYDCQESTIGAAFFSQVLIMDEATVKLDIWDTAGQERYH 68
VL+GD G GK++++ RF K + +STIG F ++ L +D +K IWDTAGQERY
Sbjct: 21 VLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSLQVDGKVIKAQIWDTAGQERYR 80
Query: 69 SLAPMYYRGXXXXXXXYD 86
++ YYRG YD
Sbjct: 81 AITSAYYRGAVGALLVYD 98
>Os06g0551400 Ras-related protein RIC2
Length = 217
Score = 70.5 bits (171), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 34/78 (43%), Positives = 47/78 (60%)
Query: 9 VLLGDLGAGKTSIVVRFAKGLYYDCQESTIGAAFFSQVLIMDEATVKLDIWDTAGQERYH 68
VL+GD G GK++++ RF + + +STIG F ++ L +D VK IWDTAGQERY
Sbjct: 18 VLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLQVDGKVVKAQIWDTAGQERYR 77
Query: 69 SLAPMYYRGXXXXXXXYD 86
++ YYRG YD
Sbjct: 78 AITSAYYRGAVGALLVYD 95
>AF327517
Length = 217
Score = 70.5 bits (171), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 34/78 (43%), Positives = 47/78 (60%)
Query: 9 VLLGDLGAGKTSIVVRFAKGLYYDCQESTIGAAFFSQVLIMDEATVKLDIWDTAGQERYH 68
VL+GD G GK++++ RF + + +STIG F ++ L +D VK IWDTAGQERY
Sbjct: 18 VLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLQVDGKVVKAQIWDTAGQERYR 77
Query: 69 SLAPMYYRGXXXXXXXYD 86
++ YYRG YD
Sbjct: 78 AITSAYYRGAVGALLVYD 95
>Os01g0750000 Similar to Ras-related protein RIC2
Length = 221
Score = 70.5 bits (171), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 34/78 (43%), Positives = 47/78 (60%)
Query: 9 VLLGDLGAGKTSIVVRFAKGLYYDCQESTIGAAFFSQVLIMDEATVKLDIWDTAGQERYH 68
VL+GD G GK++++ RF K + +STIG F ++ + +D VK IWDTAGQERY
Sbjct: 22 VLIGDSGVGKSNLLSRFTKNEFCLESKSTIGVEFATRSIQVDGKVVKAQIWDTAGQERYR 81
Query: 69 SLAPMYYRGXXXXXXXYD 86
++ YYRG YD
Sbjct: 82 AITSAYYRGAVGALLVYD 99
>Os01g0558600 Ras-related protein RIC1
Length = 202
Score = 69.7 bits (169), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 34/78 (43%), Positives = 47/78 (60%)
Query: 9 VLLGDLGAGKTSIVVRFAKGLYYDCQESTIGAAFFSQVLIMDEATVKLDIWDTAGQERYH 68
+L+GD G GK+ +++RFA Y + STIG F + + D T+KL IWDTAGQER+
Sbjct: 12 LLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFR 71
Query: 69 SLAPMYYRGXXXXXXXYD 86
++ YYRG YD
Sbjct: 72 TITSSYYRGAHGIIVVYD 89
>Os03g0843100 Ras GTPase family protein
Length = 223
Score = 69.3 bits (168), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 52/99 (52%), Gaps = 13/99 (13%)
Query: 1 MLSRPSWW-------------VLLGDLGAGKTSIVVRFAKGLYYDCQESTIGAAFFSQVL 47
M RP+ W VL+GD G GK++++ RF + + +STIG F ++ +
Sbjct: 1 MARRPAPWEQGGDEYDYLFKIVLIGDSGVGKSNLLSRFTRNSFSLDSKSTIGVEFATRTI 60
Query: 48 IMDEATVKLDIWDTAGQERYHSLAPMYYRGXXXXXXXYD 86
++ VK IWDTAGQERY ++ YYRG YD
Sbjct: 61 QVEGKIVKAQIWDTAGQERYRAITSAYYRGAVGALLVYD 99
>Os05g0105100 Similar to Small GTPase rab11-related
Length = 220
Score = 68.6 bits (166), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 47/78 (60%)
Query: 9 VLLGDLGAGKTSIVVRFAKGLYYDCQESTIGAAFFSQVLIMDEATVKLDIWDTAGQERYH 68
VL+GD G GK++++ RF + + +STIG F ++ L ++ +K IWDTAGQERY
Sbjct: 18 VLIGDSGVGKSNLLSRFTRNEFCLESKSTIGVEFATRTLHVEGKIIKAQIWDTAGQERYR 77
Query: 69 SLAPMYYRGXXXXXXXYD 86
++ YYRG YD
Sbjct: 78 AITSAYYRGALGAVLVYD 95
>Os09g0527600 Similar to GTP-binding protein (Fragment)
Length = 239
Score = 67.8 bits (164), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 33/78 (42%), Positives = 45/78 (57%)
Query: 9 VLLGDLGAGKTSIVVRFAKGLYYDCQESTIGAAFFSQVLIMDEATVKLDIWDTAGQERYH 68
V++GD GKT ++ RF K ++ +STIG F ++ L + VK IWDTAGQERY
Sbjct: 26 VVVGDSAVGKTQLLGRFTKDEFFLDSKSTIGVEFQTRTLSLHRKRVKAQIWDTAGQERYR 85
Query: 69 SLAPMYYRGXXXXXXXYD 86
++ YYRG YD
Sbjct: 86 AVTSAYYRGALGAMVVYD 103
>Os01g0227300 Similar to RAB7D
Length = 207
Score = 66.6 bits (161), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 48/78 (61%)
Query: 9 VLLGDLGAGKTSIVVRFAKGLYYDCQESTIGAAFFSQVLIMDEATVKLDIWDTAGQERYH 68
++LGD G GKTS++ ++ + + ++TIGA F ++ + +D+ L IWDTAGQER+
Sbjct: 12 IILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQIDDRLFTLQIWDTAGQERFQ 71
Query: 69 SLAPMYYRGXXXXXXXYD 86
SL +YRG YD
Sbjct: 72 SLGVAFYRGADCCVLVYD 89
>Os05g0536900 Similar to RAB7A
Length = 206
Score = 66.6 bits (161), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 49/78 (62%)
Query: 9 VLLGDLGAGKTSIVVRFAKGLYYDCQESTIGAAFFSQVLIMDEATVKLDIWDTAGQERYH 68
++LGD G GKTS++ ++ + ++TIGA F ++ +++++ V L IWDTAGQER+
Sbjct: 13 IVLGDSGVGKTSLMNQYVNKKFSQQYKATIGADFVTKEVLIEDRLVTLQIWDTAGQERFQ 72
Query: 69 SLAPMYYRGXXXXXXXYD 86
SL +YRG YD
Sbjct: 73 SLGVAFYRGADCCMLVYD 90
>Os04g0470100 Similar to Small GTP binding protein Rab2
Length = 211
Score = 66.2 bits (160), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 47/79 (59%)
Query: 8 WVLLGDLGAGKTSIVVRFAKGLYYDCQESTIGAAFFSQVLIMDEATVKLDIWDTAGQERY 67
++++GD G GK+ ++++F + + TIG F ++++ +D VKL IWDTAGQE +
Sbjct: 9 YIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITVDSRPVKLQIWDTAGQESF 68
Query: 68 HSLAPMYYRGXXXXXXXYD 86
S+ YYRG YD
Sbjct: 69 RSITRSYYRGAAGALLVYD 87
>Os01g0714900 Similar to RAB7A
Length = 207
Score = 66.2 bits (160), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 49/78 (62%)
Query: 9 VLLGDLGAGKTSIVVRFAKGLYYDCQESTIGAAFFSQVLIMDEATVKLDIWDTAGQERYH 68
++LGD G GKTS++ ++ + ++TIGA F ++ +++++ V L IWDTAGQER+
Sbjct: 13 IVLGDSGVGKTSLMNQYVHKKFSQQYKATIGADFVTKEVLIEDRLVTLQIWDTAGQERFQ 72
Query: 69 SLAPMYYRGXXXXXXXYD 86
SL +YRG YD
Sbjct: 73 SLGVAFYRGADCCVLVYD 90
>Os07g0239400 Similar to Ethylene-responsive small GTP-binding protein
Length = 215
Score = 65.9 bits (159), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 47/78 (60%)
Query: 9 VLLGDLGAGKTSIVVRFAKGLYYDCQESTIGAAFFSQVLIMDEATVKLDIWDTAGQERYH 68
+L+GD G GK+ +++RF+ G + +TIG F + + +D +KL IWDTAGQER+
Sbjct: 19 LLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR 78
Query: 69 SLAPMYYRGXXXXXXXYD 86
++ YYRG YD
Sbjct: 79 TITTAYYRGAMGILLVYD 96
>Os05g0461300 Similar to RAB8C
Length = 216
Score = 65.9 bits (159), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 47/78 (60%)
Query: 9 VLLGDLGAGKTSIVVRFAKGLYYDCQESTIGAAFFSQVLIMDEATVKLDIWDTAGQERYH 68
+L+GD G GK+ +++RF+ G + +TIG F + + +D +KL IWDTAGQER+
Sbjct: 19 LLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFR 78
Query: 69 SLAPMYYRGXXXXXXXYD 86
++ YYRG YD
Sbjct: 79 TITTAYYRGAMGILLVYD 96
>Os03g0819900 Similar to RAB8C
Length = 214
Score = 65.9 bits (159), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 47/78 (60%)
Query: 9 VLLGDLGAGKTSIVVRFAKGLYYDCQESTIGAAFFSQVLIMDEATVKLDIWDTAGQERYH 68
+L+GD G GK+ +++RF+ G + +TIG F + + +D +KL IWDTAGQER+
Sbjct: 19 LLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTVELDGKRIKLQIWDTAGQERFR 78
Query: 69 SLAPMYYRGXXXXXXXYD 86
++ YYRG YD
Sbjct: 79 TITTAYYRGAMGILLVYD 96
>Os06g0714600 Ras GTPase family protein
Length = 225
Score = 64.7 bits (156), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 45/78 (57%)
Query: 9 VLLGDLGAGKTSIVVRFAKGLYYDCQESTIGAAFFSQVLIMDEATVKLDIWDTAGQERYH 68
V++GD GKT ++ RF K ++ +STIG F ++ + + VK IWDTAGQERY
Sbjct: 11 VVIGDSAVGKTQLLGRFTKDEFFIDSKSTIGIEFQTRTVEIGGKRVKAQIWDTAGQERYR 70
Query: 69 SLAPMYYRGXXXXXXXYD 86
++ YYRG YD
Sbjct: 71 AVTSAYYRGALGAMLVYD 88
>Os05g0516600 Small GTP binding protein
Length = 206
Score = 64.3 bits (155), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 47/78 (60%)
Query: 9 VLLGDLGAGKTSIVVRFAKGLYYDCQESTIGAAFFSQVLIMDEATVKLDIWDTAGQERYH 68
++LGD G GKTS++ ++ + + ++TIGA F ++ + ++ L IWDTAGQER+
Sbjct: 12 IILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQ 71
Query: 69 SLAPMYYRGXXXXXXXYD 86
SL +YRG YD
Sbjct: 72 SLGVAFYRGADCCVLVYD 89
>Os08g0525000 Ras GTPase family protein
Length = 216
Score = 63.5 bits (153), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 47/78 (60%)
Query: 9 VLLGDLGAGKTSIVVRFAKGLYYDCQESTIGAAFFSQVLIMDEATVKLDIWDTAGQERYH 68
V++GD GK++++ R+A+ + ++TIG F +Q + ++ VK IWDTAGQER+
Sbjct: 17 VIIGDSAVGKSNLLSRYARNEFNLHSKATIGVEFQTQSMDINGKDVKAQIWDTAGQERFR 76
Query: 69 SLAPMYYRGXXXXXXXYD 86
++ YYRG YD
Sbjct: 77 AVTSAYYRGAFGALLVYD 94
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.323 0.138 0.443
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 2,450,996
Number of extensions: 70332
Number of successful extensions: 280
Number of sequences better than 1.0e-10: 38
Number of HSP's gapped: 281
Number of HSP's successfully gapped: 38
Length of query: 98
Length of database: 17,035,801
Length adjustment: 67
Effective length of query: 31
Effective length of database: 13,537,463
Effective search space: 419661353
Effective search space used: 419661353
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 149 (62.0 bits)