Os01g0558600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Ras-related protein RIC1.
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Os01g0558600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Ras-related protein RIC1.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 22.86 | 0.225 | 14.8 | 0.559 | 0.171 | -0.65 | 0.742 | -0.952 | 0.378 | 7.49 | 1.788 | 128 | -- | -- |
| 23.81 | 0.227 | 14.8 | 0.553 | 0.171 | -0.544 | 0.741 | -- | 0.382 | 5.59 | 2.887 | 129 | -- | -- |
| 24.04 | 0.228 | 14.8 | 0.578 | 0.134 | -0.609 | -- | -0.687 | 0.377 | 7.57 | -6.432 | 169 | -- | -- |
| 25.1 | 0.233 | 14.8 | 0.565 | 0.141 | -0.579 | -- | -- | 0.375 | 7.14 | -3.824 | 170 | -- | -- |
| 24.62 | 0.231 | 14.8 | 0.585 | -- | -0.607 | -- | -0.711 | 0.385 | -- | -13.03 | 275 | -- | -- |
| 28.39 | 0.25 | 14.8 | 0.565 | 0.4 | -- | 0.56 | -- | 0.348 | 3.12 | -- | -- | -- | -- |
| 29.38 | 0.254 | 14.8 | 0.553 | 0.4 | -- | -- | -- | 0.344 | 2.85 | -- | -- | -- | -- |
| 25.7 | 0.236 | 14.8 | 0.578 | -- | -0.599 | -- | -- | 0.388 | -- | -0.7009 | 275 | -- | -- |
| 33.48 | 0.269 | 14.8 | -- | 0.157 | -0.563 | -- | -- | 0.311 | 6.53 | -21.5 | 162 | -- | -- |
| 38.65 | 0.29 | 14.8 | 0.57 | -- | -- | -- | -- | 0.355 | -- | -- | -- | -- | -- |
| 37.44 | 0.286 | 14.8 | -- | 0.411 | -- | -- | -- | 0.283 | 2.86 | -- | -- | -- | -- |
| 34.5 | 0.274 | 14.8 | -- | -- | -0.589 | -- | -- | 0.323 | -- | -6.274 | 261 | -- | -- |
| 47.22 | 0.321 | 14.8 | -- | -- | -- | -- | -- | 0.291 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 21.78 | temperature | 20 | 10 | > th | dose dependent | rect. | 8 | 19 |
| 2 | 21.80 | temperature | 15 | 90 | > th | dose dependent | rect. | 8 | 19 |
| 7 | 21.90 | temperature | 25 | 270 | > th | dose dependent | sin | 7 | NA |
| 8 | 21.92 | temperature | 20 | 10 | > th | dose dependent | rect. | 8 | 17 |
| 12 | 21.97 | temperature | 10 | 270 | > th | dose dependent | rect. | 6 | 21 |
| 18 | 22.04 | temperature | 25 | 270 | > th | dose dependent | rect. | 17 | 21 |
| 32 | 22.16 | temperature | 20 | 10 | > th | dose dependent | rect. | 8 | 14 |
| 34 | 22.18 | temperature | 25 | 90 | > th | dose dependent | sin | 3 | NA |
| 45 | 22.25 | temperature | 20 | 10 | > th | dose dependent | rect. | 8 | 10 |
| 66 | 22.35 | temperature | 25 | 90 | > th | dose dependent | rect. | 19 | 22 |
| 67 | 22.37 | temperature | 20 | 10 | > th | dose dependent | sin | 0 | NA |
| 169 | 22.71 | atmosphere | 1015 | 90 | < th | dose dependent | rect. | 8 | 19 |
| 191 | 22.79 | temperature | 30 | 270 | < th | dose dependent | rect. | 2 | 16 |
| 215 | 22.85 | atmosphere | 1000 | 10 | > th | dose independent | sin | 20 | NA |
| 243 | 22.89 | temperature | 30 | 90 | < th | dose dependent | rect. | 5 | 14 |
| 251 | 22.91 | radiation | 1 | 270 | > th | dose dependent | sin | 5 | NA |
| 274 | 22.94 | temperature | 25 | 90 | > th | dose dependent | rect. | 23 | 18 |
| 285 | 22.96 | temperature | 30 | 90 | < th | dose dependent | sin | 1 | NA |
| 300 | 22.97 | temperature | 25 | 10 | > th | dose dependent | rect. | 23 | 19 |
| 308 | 22.99 | atmosphere | 1000 | 10 | < th | dose independent | rect. | 9 | 15 |
| 313 | 23.00 | atmosphere | 1000 | 30 | > th | dose independent | sin | 22 | NA |
| 334 | 23.02 | radiation | 1 | 270 | > th | dose dependent | rect. | 15 | 22 |
| 419 | 23.12 | temperature | 25 | 90 | > th | dose dependent | rect. | 3 | 14 |
| 454 | 23.15 | temperature | 25 | 10 | > th | dose dependent | rect. | 4 | 14 |
| 516 | 23.22 | atmosphere | 1000 | 10 | < th | dose independent | sin | 21 | NA |
| 546 | 23.24 | atmosphere | 1000 | 90 | > th | dose independent | rect. | 5 | 14 |
| 548 | 23.24 | radiation | 40 | 270 | < th | dose dependent | sin | 5 | NA |
| 555 | 23.25 | temperature | 30 | 270 | < th | dose independent | rect. | 2 | 15 |
| 568 | 23.26 | atmosphere | 1000 | 10 | < th | dose independent | rect. | 9 | 13 |
| 586 | 23.27 | temperature | 25 | 270 | > th | dose dependent | rect. | 8 | 3 |
| 595 | 23.27 | temperature | 25 | 10 | > th | dose dependent | rect. | 17 | 23 |
| 607 | 23.28 | temperature | 30 | 270 | < th | dose dependent | rect. | 1 | 20 |
| 611 | 23.28 | radiation | 40 | 270 | < th | dose dependent | rect. | 20 | 23 |
| 612 | 23.29 | temperature | 25 | 720 | > th | dose independent | sin | 4 | NA |
| 620 | 23.29 | atmosphere | 1010 | 10 | < th | dose dependent | rect. | 9 | 15 |
| 628 | 23.30 | radiation | 1 | 90 | > th | dose dependent | rect. | 7 | 11 |
| 660 | 23.32 | atmosphere | 1000 | 10 | < th | dose independent | rect. | 9 | 11 |
| 713 | 23.36 | temperature | 30 | 14400 | < th | dose independent | rect. | 6 | 3 |
| 714 | 23.36 | temperature | 30 | 14400 | < th | dose independent | rect. | 4 | 5 |
| 717 | 23.36 | radiation | 40 | 14400 | > th | dose dependent | rect. | 12 | 1 |
| 726 | 23.36 | temperature | 10 | 270 | > th | dose dependent | rect. | 16 | 23 |
| 745 | 23.37 | temperature | 30 | 270 | < th | dose dependent | rect. | 23 | 20 |
| 753 | 23.38 | temperature | 25 | 720 | > th | dose independent | rect. | 6 | 7 |
| 760 | 23.38 | radiation | 1 | 90 | > th | dose dependent | no | NA | NA |
| 822 | 23.38 | temperature | 25 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 836 | 23.39 | temperature | 30 | 14400 | < th | dose independent | rect. | 19 | 14 |
| 870 | 23.41 | temperature | 30 | 14400 | < th | dose independent | rect. | 23 | 10 |
| 926 | 23.44 | radiation | 40 | 270 | < th | dose dependent | rect. | 9 | 23 |
| 929 | 23.45 | wind | 9 | 14400 | > th | dose dependent | rect. | 13 | 1 |
| 944 | 23.46 | temperature | 25 | 10 | > th | dose dependent | no | NA | NA |
| 950 | 23.46 | radiation | 40 | 270 | < th | dose dependent | rect. | 3 | 12 |
| 962 | 23.47 | temperature | 30 | 14400 | > th | dose independent | rect. | 8 | 1 |
| 967 | 23.47 | temperature | 25 | 720 | > th | dose independent | rect. | 6 | 5 |
| 973 | 23.47 | temperature | 25 | 720 | > th | dose independent | rect. | 3 | 10 |
| 981 | 23.47 | temperature | 25 | 270 | < th | dose independent | rect. | 23 | 19 |
| 994 | 23.47 | temperature | 25 | 10 | > th | dose dependent | rect. | 4 | 22 |
| 999 | 23.48 | temperature | 25 | 720 | < th | dose independent | rect. | 3 | 10 |