Os03g0843100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Ras GTPase family protein.
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Os03g0843100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Ras GTPase family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 24.31 | 0.232 | 11.1 | -0.737 | 1.24 | 0.824 | -0.321 | -2.56 | -0.18 | 7.7 | 26.19 | 1241 | -- | -- |
| 25.12 | 0.233 | 11 | -0.175 | 1.23 | 0.649 | -0.223 | -- | -0.163 | 7.71 | 20.92 | 1195 | -- | -- |
| 24.59 | 0.231 | 11.1 | -0.748 | 1.24 | 0.812 | -- | -2.56 | -0.177 | 7.67 | 26.26 | 1264 | -- | -- |
| 25.3 | 0.234 | 11 | -0.171 | 1.25 | 0.666 | -- | -- | -0.161 | 7.73 | 20.8 | 1173 | -- | -- |
| 104.12 | 0.475 | 11.1 | -0.489 | -- | 0.71 | -- | -1.2 | -0.202 | -- | 23.7 | 1371 | -- | -- |
| 38.13 | 0.289 | 11 | 0.054 | 1.23 | -- | -0.259 | -- | -0.017 | 7.39 | -- | -- | -- | -- |
| 38.31 | 0.29 | 11 | 0.048 | 1.23 | -- | -- | -- | -0.0166 | 7.38 | -- | -- | -- | -- |
| 104.49 | 0.476 | 11 | -0.161 | -- | 0.636 | -- | -- | -0.15 | -- | 21.2 | 1380 | -- | -- |
| 26.02 | 0.238 | 11 | -- | 1.25 | 0.628 | -- | -- | -0.143 | 7.7 | 21.1 | 1169 | -- | -- |
| 118.49 | 0.509 | 11 | 0.0681 | -- | -- | -- | -- | 0.00349 | -- | -- | -- | -- | -- |
| 38.38 | 0.29 | 11 | -- | 1.23 | -- | -- | -- | -0.022 | 7.38 | -- | -- | -- | -- |
| 105.13 | 0.478 | 11 | -- | -- | 0.591 | -- | -- | -0.126 | -- | 21.86 | 1383 | -- | -- |
| 118.61 | 0.508 | 11 | -- | -- | -- | -- | -- | -0.00406 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 24.30 | temperature | 10 | 270 | > th | dose dependent | rect. | 24 | 22 |
| 2 | 24.36 | temperature | 25 | 1440 | > th | dose dependent | rect. | 15 | 2 |
| 4 | 24.44 | temperature | 25 | 1440 | > th | dose dependent | rect. | 11 | 7 |
| 45 | 24.72 | temperature | 25 | 1440 | > th | dose dependent | rect. | 11 | 20 |
| 48 | 24.74 | temperature | 25 | 1440 | > th | dose dependent | sin | 19 | NA |
| 70 | 24.81 | temperature | 15 | 270 | > th | dose dependent | rect. | 10 | 22 |
| 104 | 24.93 | temperature | 25 | 1440 | > th | dose dependent | rect. | 6 | 13 |
| 161 | 25.00 | temperature | 15 | 270 | > th | dose dependent | rect. | 11 | 20 |
| 267 | 25.13 | temperature | 25 | 1440 | > th | dose dependent | no | NA | NA |
| 365 | 25.25 | temperature | 15 | 270 | > th | dose dependent | rect. | 12 | 18 |
| 538 | 25.42 | temperature | 10 | 1440 | > th | dose dependent | rect. | 14 | 9 |
| 627 | 25.53 | temperature | 10 | 1440 | > th | dose dependent | rect. | 15 | 3 |
| 636 | 25.54 | temperature | 10 | 1440 | > th | dose dependent | sin | 19 | NA |
| 675 | 25.57 | temperature | 10 | 1440 | > th | dose dependent | rect. | 16 | 1 |
| 711 | 25.60 | temperature | 10 | 1440 | > th | dose dependent | rect. | 6 | 17 |
| 837 | 25.68 | temperature | 10 | 1440 | > th | dose dependent | rect. | 4 | 15 |
| 889 | 25.71 | temperature | 20 | 1440 | > th | dose dependent | rect. | 20 | 2 |