Os03g0666500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Ras-related protein RHA1.
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Os03g0666500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Ras-related protein RHA1.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 26.87 | 0.244 | 10.3 | -1.9 | 0.159 | 1.01 | -0.528 | -1.21 | -0.376 | 3.17 | 20.45 | 1338 | -- | -- |
| 28.04 | 0.247 | 10.3 | -1.58 | 0.157 | 1 | -0.669 | -- | -0.29 | 3.16 | 19.05 | 1331 | -- | -- |
| 27.19 | 0.243 | 10.3 | -1.98 | 0.182 | 1.09 | -- | -1.59 | -0.394 | 6.27 | 20.21 | 1154 | -- | -- |
| 28.65 | 0.249 | 10.3 | -1.59 | 0.172 | 1.19 | -- | -- | -0.279 | 6.25 | 16.25 | 1154 | -- | -- |
| 28.67 | 0.249 | 10.3 | -1.97 | -- | 1.07 | -- | -1.49 | -0.396 | -- | 20.43 | 1240 | -- | -- |
| 55.41 | 0.349 | 10.2 | -1.21 | 0.262 | -- | -0.523 | -- | -0.059 | 3.1 | -- | -- | -- | -- |
| 56.25 | 0.351 | 10.2 | -1.2 | 0.265 | -- | -- | -- | -0.0562 | 3.6 | -- | -- | -- | -- |
| 30.01 | 0.255 | 10.3 | -1.59 | -- | 1.24 | -- | -- | -0.288 | -- | 16 | 1233 | -- | -- |
| 84.82 | 0.429 | 10.2 | -- | 0.424 | 0.617 | -- | -- | -0.0178 | 5.38 | 20.5 | 524 | -- | -- |
| 60.16 | 0.362 | 10.2 | -1.19 | -- | -- | -- | -- | -0.0491 | -- | -- | -- | -- | -- |
| 94.19 | 0.454 | 10.2 | -- | 0.242 | -- | -- | -- | 0.0775 | 3.63 | -- | -- | -- | -- |
| 85.86 | 0.432 | 10.2 | -- | -- | 0.556 | -- | -- | -0.0179 | -- | 22 | 1220 | -- | -- |
| 97.44 | 0.461 | 10.2 | -- | -- | -- | -- | -- | 0.0828 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 26.05 | temperature | 20 | 1440 | > th | dose dependent | rect. | 16 | 6 |
| 26 | 26.51 | temperature | 20 | 1440 | > th | dose dependent | sin | 17 | NA |
| 65 | 26.84 | temperature | 10 | 1440 | > th | dose dependent | rect. | 16 | 6 |
| 86 | 26.90 | temperature | 20 | 1440 | > th | dose dependent | rect. | 11 | 20 |
| 103 | 26.95 | temperature | 20 | 1440 | > th | dose dependent | rect. | 5 | 19 |
| 223 | 27.22 | temperature | 20 | 1440 | > th | dose dependent | no | NA | NA |
| 238 | 27.26 | temperature | 10 | 1440 | > th | dose dependent | rect. | 18 | 1 |
| 250 | 27.28 | temperature | 30 | 1440 | < th | dose dependent | rect. | 18 | 4 |
| 273 | 27.31 | temperature | 20 | 1440 | > th | dose dependent | rect. | 20 | 23 |