Os03g0819900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to RAB8C.
FiT-DB / Search/ Help/ Sample detail
|
Os03g0819900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Similar to RAB8C.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 35.32 | 0.279 | 11.1 | -0.955 | 0.958 | 0.172 | 0.473 | -1.8 | 0.139 | 1.97 | 20.2 | 1659 | -- | -- |
| 39.29 | 0.292 | 11 | -0.768 | 0.939 | 0.657 | 0.481 | -- | 0.177 | 1.95 | 18.4 | 2905 | -- | -- |
| 35.78 | 0.279 | 11.1 | -0.947 | 0.951 | 0.188 | -- | -1.97 | 0.156 | 2 | 19.4 | 1626 | -- | -- |
| 40.22 | 0.295 | 11 | -0.788 | 0.947 | 0.642 | -- | -- | 0.173 | 2.01 | 18.56 | 2972 | -- | -- |
| 89.52 | 0.441 | 11.1 | -1.04 | -- | 0.286 | -- | -1.64 | 0.113 | -- | 20.17 | 2593 | -- | -- |
| 44.82 | 0.314 | 11 | -0.471 | 0.957 | -- | 0.484 | -- | 0.295 | 2.01 | -- | -- | -- | -- |
| 45.7 | 0.317 | 11 | -0.486 | 0.959 | -- | -- | -- | 0.292 | 2.07 | -- | -- | -- | -- |
| 91.33 | 0.445 | 11 | -0.821 | -- | 0.801 | -- | -- | 0.167 | -- | 18.48 | 2390 | -- | -- |
| 46.56 | 0.318 | 10.9 | -- | 0.976 | -0.431 | -- | -- | 0.589 | 2.23 | 24.3 | 15924 | -- | -- |
| 100.83 | 0.469 | 11 | -0.446 | -- | -- | -- | -- | 0.315 | -- | -- | -- | -- | -- |
| 51.93 | 0.337 | 11 | -- | 0.95 | -- | -- | -- | 0.346 | 2.06 | -- | -- | -- | -- |
| 77.35 | 0.411 | 11 | -- | -- | -0.555 | -- | -- | 0.429 | -- | 26.94 | 47520 | -- | -- |
| 106.08 | 0.481 | 11 | -- | -- | -- | -- | -- | 0.364 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 32.01 | radiation | 20 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 2 | 32.42 | humidity | 90 | 14400 | > th | dose independent | rect. | 21 | 4 |
| 13 | 32.97 | humidity | 90 | 14400 | > th | dose independent | rect. | 17 | 11 |
| 14 | 32.98 | humidity | 90 | 14400 | < th | dose independent | rect. | 21 | 4 |
| 23 | 33.14 | humidity | 90 | 14400 | > th | dose independent | sin | 13 | NA |
| 31 | 33.21 | humidity | 90 | 14400 | < th | dose independent | rect. | 17 | 10 |
| 67 | 33.41 | humidity | 90 | 14400 | < th | dose independent | rect. | 22 | 1 |
| 68 | 33.41 | humidity | 90 | 14400 | > th | dose independent | rect. | 21 | 11 |
| 102 | 33.55 | humidity | 90 | 14400 | < th | dose independent | sin | 13 | NA |
| 118 | 33.63 | temperature | 20 | 14400 | > th | dose independent | rect. | 5 | 4 |
| 145 | 33.73 | temperature | 20 | 14400 | < th | dose independent | rect. | 5 | 4 |
| 152 | 33.74 | humidity | 90 | 14400 | > th | dose dependent | rect. | 5 | 2 |
| 170 | 33.81 | temperature | 20 | 14400 | > th | dose independent | rect. | 6 | 2 |
| 182 | 33.83 | temperature | 20 | 14400 | < th | dose independent | rect. | 4 | 6 |
| 183 | 33.83 | humidity | 90 | 14400 | > th | dose dependent | rect. | 4 | 4 |
| 184 | 33.84 | temperature | 20 | 14400 | > th | dose independent | sin | 5 | NA |
| 188 | 33.85 | temperature | 20 | 14400 | > th | dose independent | rect. | 24 | 14 |
| 196 | 33.87 | temperature | 20 | 14400 | < th | dose independent | rect. | 6 | 2 |
| 205 | 33.87 | humidity | 90 | 14400 | > th | dose dependent | rect. | 22 | 3 |
| 223 | 33.90 | temperature | 20 | 14400 | > th | dose independent | rect. | 21 | 16 |
| 226 | 33.91 | temperature | 20 | 14400 | < th | dose independent | sin | 5 | NA |
| 249 | 33.92 | temperature | 20 | 14400 | < th | dose independent | rect. | 24 | 12 |
| 264 | 33.93 | humidity | 90 | 14400 | < th | dose independent | rect. | 21 | 12 |
| 274 | 33.94 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 11 |
| 300 | 33.95 | temperature | 20 | 14400 | < th | dose independent | rect. | 20 | 16 |
| 306 | 33.95 | humidity | 80 | 43200 | > th | dose dependent | rect. | 12 | 1 |
| 320 | 33.96 | temperature | 20 | 14400 | < th | dose independent | rect. | 24 | 21 |
| 322 | 33.96 | humidity | 90 | 14400 | > th | dose dependent | rect. | 12 | 19 |
| 372 | 33.99 | temperature | 20 | 14400 | < th | dose independent | rect. | 17 | 17 |
| 427 | 34.01 | humidity | 90 | 14400 | > th | dose dependent | rect. | 23 | 19 |
| 466 | 34.04 | temperature | 20 | 14400 | > th | dose independent | rect. | 16 | 18 |
| 537 | 34.07 | humidity | 90 | 43200 | > th | dose independent | rect. | 9 | 5 |
| 591 | 34.09 | temperature | 20 | 14400 | < th | dose independent | no | NA | NA |
| 622 | 34.10 | radiation | 20 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 625 | 34.11 | temperature | 20 | 14400 | > th | dose independent | no | NA | NA |
| 647 | 34.13 | humidity | 90 | 43200 | < th | dose independent | rect. | 10 | 2 |
| 676 | 34.15 | humidity | 90 | 43200 | < th | dose independent | rect. | 9 | 5 |
| 701 | 34.16 | temperature | 20 | 14400 | < th | dose independent | rect. | 6 | 23 |
| 718 | 34.17 | humidity | 90 | 43200 | > th | dose dependent | rect. | 9 | 3 |
| 733 | 34.18 | temperature | 20 | 14400 | > th | dose independent | rect. | 6 | 23 |
| 736 | 34.18 | temperature | 25 | 14400 | < th | dose dependent | rect. | 2 | 13 |
| 793 | 34.22 | radiation | 20 | 4320 | > th | dose dependent | rect. | 7 | 1 |
| 854 | 34.26 | temperature | 25 | 14400 | < th | dose dependent | sin | 4 | NA |
| 892 | 34.29 | temperature | 20 | 1440 | > th | dose independent | rect. | 6 | 1 |
| 906 | 34.30 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 11 |
| 974 | 34.33 | humidity | 90 | 14400 | < th | dose independent | rect. | 21 | 18 |