Os01g0227300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to RAB7D.
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Os01g0227300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to RAB7D.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 34.65 | 0.277 | 12.7 | 0.00302 | 1.5 | -0.566 | 0.318 | -0.593 | 0.177 | 10.1 | 4.978 | 9 | -- | -- |
| 34.99 | 0.278 | 12.7 | -0.00015 | 1.48 | -0.552 | 0.037 | -- | 0.175 | 10.1 | 4.978 | 9 | -- | -- |
| 34.83 | 0.277 | 12.7 | 0.00925 | 1.48 | -0.558 | -- | -0.284 | 0.176 | 10.1 | 4.978 | 9 | -- | -- |
| 34.99 | 0.277 | 12.7 | 0.00131 | 1.48 | -0.551 | -- | -- | 0.175 | 10.1 | 4.978 | 9 | -- | -- |
| 109.15 | 0.487 | 12.7 | -0.0092 | -- | 0.886 | -- | -0.0958 | 0.162 | -- | -2.677 | 26 | -- | -- |
| 39.69 | 0.295 | 12.7 | -0.0116 | 1.27 | -- | 0.0144 | -- | 0.178 | 9.64 | -- | -- | -- | -- |
| 39.69 | 0.295 | 12.7 | -0.0111 | 1.27 | -- | -- | -- | 0.178 | 9.64 | -- | -- | -- | -- |
| 109.18 | 0.487 | 12.7 | -0.0121 | -- | 0.887 | -- | -- | 0.161 | -- | -4.238 | 26 | -- | -- |
| 34.99 | 0.277 | 12.7 | -- | 1.48 | -0.551 | -- | -- | 0.175 | 10.1 | 4.978 | 9 | -- | -- |
| 134.56 | 0.542 | 12.7 | -0.0216 | -- | -- | -- | -- | 0.181 | -- | -- | -- | -- | -- |
| 39.69 | 0.295 | 12.7 | -- | 1.27 | -- | -- | -- | 0.179 | 9.64 | -- | -- | -- | -- |
| 109.18 | 0.487 | 12.7 | -- | -- | 0.887 | -- | -- | 0.163 | -- | -18.74 | 26 | -- | -- |
| 134.57 | 0.541 | 12.7 | -- | -- | -- | -- | -- | 0.183 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 29.40 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 7 | 4 |
| 4 | 29.55 | atmosphere | 1000.0 | 30 | > th | dose independent | rect. | 4 | 15 |
| 17 | 30.06 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 9 | 1 |
| 23 | 30.19 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 7 | 7 |
| 38 | 30.58 | atmosphere | 995.0 | 30 | > th | dose dependent | rect. | 4 | 15 |
| 60 | 30.93 | temperature | 25.0 | 270 | > th | dose independent | rect. | 24 | 11 |
| 66 | 30.99 | temperature | 25.0 | 90 | > th | dose dependent | sin | 6 | NA |
| 76 | 31.10 | temperature | 25.0 | 270 | > th | dose dependent | rect. | 24 | 11 |
| 79 | 31.13 | temperature | 25.0 | 90 | > th | dose dependent | rect. | 19 | 18 |
| 89 | 31.16 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 3 | 15 |
| 93 | 31.18 | temperature | 15.0 | 90 | > th | dose dependent | rect. | 19 | 18 |
| 95 | 31.20 | temperature | 25.0 | 270 | > th | dose independent | rect. | 6 | 5 |
| 100 | 31.22 | temperature | 25.0 | 270 | > th | dose independent | rect. | 7 | 3 |
| 129 | 31.46 | radiation | 1.0 | 90 | < th | dose dependent | sin | 14 | NA |
| 144 | 31.50 | atmosphere | 1015.0 | 270 | < th | dose dependent | rect. | 6 | 7 |
| 162 | 31.60 | temperature | 25.0 | 270 | < th | dose independent | rect. | 1 | 14 |
| 175 | 31.67 | radiation | 40.0 | 10 | < th | dose dependent | rect. | 5 | 14 |
| 230 | 31.84 | temperature | 25.0 | 270 | < th | dose independent | rect. | 1 | 10 |
| 240 | 31.87 | atmosphere | 1015.0 | 270 | < th | dose dependent | rect. | 7 | 4 |
| 263 | 31.96 | atmosphere | 1015.0 | 10 | < th | dose dependent | rect. | 8 | 6 |
| 267 | 31.97 | radiation | 1.0 | 270 | > th | dose dependent | rect. | 6 | 5 |
| 288 | 32.01 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 1 | 13 |
| 289 | 32.02 | radiation | 40.0 | 90 | < th | dose independent | rect. | 3 | 15 |
| 296 | 32.02 | temperature | 25.0 | 10 | > th | dose dependent | rect. | 4 | 10 |
| 305 | 32.03 | temperature | 25.0 | 270 | < th | dose independent | sin | 6 | NA |
| 307 | 32.03 | radiation | 40.0 | 10 | < th | dose independent | rect. | 4 | 15 |
| 312 | 32.03 | radiation | 1.0 | 90 | < th | dose dependent | rect. | 5 | 23 |
| 333 | 32.08 | radiation | 1.0 | 90 | < th | dose dependent | rect. | 13 | 15 |
| 336 | 32.08 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 17 | 20 |
| 339 | 32.10 | temperature | 25.0 | 270 | > th | dose independent | sin | 6 | NA |
| 341 | 32.10 | temperature | 30.0 | 90 | < th | dose dependent | sin | 4 | NA |
| 361 | 32.11 | radiation | 1.0 | 90 | < th | dose dependent | rect. | 9 | 19 |
| 389 | 32.15 | radiation | 1.0 | 270 | > th | dose dependent | sin | 9 | NA |
| 414 | 32.20 | radiation | 1.0 | 90 | < th | dose independent | sin | 14 | NA |
| 445 | 32.24 | atmosphere | 1015.0 | 270 | < th | dose dependent | rect. | 9 | 1 |
| 473 | 32.29 | radiation | 1.0 | 90 | > th | dose independent | sin | 14 | NA |
| 542 | 32.44 | radiation | 1.0 | 270 | > th | dose dependent | rect. | 9 | 1 |
| 553 | 32.46 | radiation | 1.0 | 90 | < th | dose dependent | rect. | 18 | 10 |
| 585 | 32.54 | temperature | 30.0 | 90 | < th | dose independent | rect. | 18 | 10 |
| 606 | 32.57 | radiation | 30.0 | 270 | < th | dose dependent | sin | 8 | NA |
| 612 | 32.59 | humidity | 60.0 | 90 | > th | dose independent | rect. | 18 | 10 |
| 643 | 32.62 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 1 | 14 |
| 663 | 32.66 | radiation | 20.0 | 30 | < th | dose independent | rect. | 4 | 15 |
| 729 | 32.74 | radiation | 1.0 | 90 | < th | dose independent | rect. | 18 | 10 |
| 740 | 32.74 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 8 | 19 |
| 747 | 32.75 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 8 | 20 |
| 792 | 32.80 | temperature | 25.0 | 10 | > th | dose independent | rect. | 8 | 6 |
| 793 | 32.80 | wind | 5.0 | 270 | < th | dose independent | rect. | 6 | 7 |
| 887 | 32.92 | temperature | 10.0 | 30 | > th | dose independent | rect. | 19 | 9 |
| 891 | 32.92 | atmosphere | 995.0 | 30 | > th | dose independent | rect. | 19 | 9 |
| 897 | 32.92 | temperature | 10.0 | 30 | > th | dose independent | rect. | 4 | 15 |
| 899 | 32.92 | atmosphere | 1015.0 | 30 | < th | dose independent | rect. | 4 | 15 |
| 900 | 32.92 | radiation | 1.0 | 90 | < th | dose independent | rect. | 13 | 15 |
| 931 | 32.94 | wind | 9.0 | 30 | < th | dose independent | rect. | 19 | 9 |
| 932 | 32.94 | radiation | 1.0 | 90 | < th | dose independent | rect. | 9 | 19 |
| 985 | 32.99 | radiation | 10.0 | 270 | > th | dose independent | rect. | 6 | 5 |
| 996 | 32.99 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 4 | 15 |