Os03g0823700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Ras-related protein Rab11C.
FiT-DB / Search/ Help/ Sample detail
|
Os03g0823700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Similar to Ras-related protein Rab11C.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 21.07 | 0.216 | 10.4 | 0.547 | 0.45 | 0.348 | 0.0151 | -0.392 | 0.487 | 2.89 | 20 | 1443 | -- | -- |
| 21.34 | 0.215 | 10.4 | 0.523 | 0.445 | 0.358 | 0.0289 | -- | 0.482 | 2.95 | 19.73 | 1499 | -- | -- |
| 21.07 | 0.214 | 10.4 | 0.548 | 0.45 | 0.347 | -- | -0.393 | 0.487 | 2.89 | 19.98 | 1443 | -- | -- |
| 21.33 | 0.215 | 10.4 | 0.513 | 0.438 | 0.353 | -- | -- | 0.482 | 3 | 19.89 | 1503 | -- | -- |
| 24.93 | 0.233 | 10.4 | 0.519 | -- | 0.495 | -- | 0.133 | 0.48 | -- | 8.44 | 399 | -- | -- |
| 25.86 | 0.238 | 10.4 | 0.495 | 0.434 | -- | -0.0452 | -- | 0.401 | 2.97 | -- | -- | -- | -- |
| 25.86 | 0.238 | 10.4 | 0.496 | 0.434 | -- | -- | -- | 0.402 | 2.95 | -- | -- | -- | -- |
| 24.23 | 0.229 | 10.4 | 0.461 | -- | 0.442 | -- | -- | 0.427 | -- | 8.445 | 372 | -- | -- |
| 28.48 | 0.249 | 10.4 | -- | 0.437 | 0.35 | -- | -- | 0.48 | 2.97 | 20 | 1542 | -- | -- |
| 36.68 | 0.283 | 10.4 | 0.515 | -- | -- | -- | -- | 0.413 | -- | -- | -- | -- | -- |
| 32.36 | 0.266 | 10.5 | -- | 0.444 | -- | -- | -- | 0.346 | 2.96 | -- | -- | -- | -- |
| 30.16 | 0.256 | 10.4 | -- | -- | 0.489 | -- | -- | 0.408 | -- | 9.9 | 376 | -- | -- |
| 43.68 | 0.308 | 10.5 | -- | -- | -- | -- | -- | 0.356 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 20.43 | radiation | 20 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 4 | 20.69 | radiation | 10 | 1440 | > th | dose dependent | rect. | 11 | 2 |
| 5 | 20.70 | radiation | 20 | 1440 | < th | dose independent | rect. | 8 | 6 |
| 11 | 20.80 | radiation | 40 | 1440 | < th | dose dependent | rect. | 11 | 2 |
| 14 | 20.84 | radiation | 40 | 1440 | < th | dose independent | rect. | 11 | 2 |
| 18 | 20.92 | radiation | 20 | 1440 | < th | dose independent | rect. | 8 | 16 |
| 19 | 20.92 | radiation | 20 | 1440 | < th | dose independent | rect. | 17 | 21 |
| 36 | 20.93 | radiation | 20 | 1440 | < th | dose independent | rect. | 19 | 19 |
| 50 | 20.96 | radiation | 20 | 1440 | < th | dose independent | sin | 0 | NA |
| 203 | 21.08 | radiation | 20 | 1440 | < th | dose independent | no | NA | NA |
| 292 | 21.15 | radiation | 1 | 1440 | > th | dose dependent | rect. | 8 | 5 |
| 301 | 21.18 | radiation | 20 | 1440 | > th | dose independent | rect. | 11 | 2 |
| 310 | 21.21 | temperature | 20 | 14400 | > th | dose independent | rect. | 20 | 5 |
| 315 | 21.22 | radiation | 30 | 1440 | < th | dose dependent | rect. | 8 | 10 |
| 335 | 21.22 | radiation | 30 | 1440 | < th | dose dependent | rect. | 16 | 22 |
| 345 | 21.24 | temperature | 20 | 14400 | < th | dose independent | rect. | 20 | 5 |
| 381 | 21.26 | radiation | 30 | 1440 | < th | dose dependent | sin | 0 | NA |
| 428 | 21.28 | radiation | 40 | 1440 | < th | dose dependent | rect. | 22 | 16 |
| 529 | 21.33 | radiation | 10 | 1440 | < th | dose independent | rect. | 13 | 7 |
| 530 | 21.33 | radiation | 10 | 1440 | < th | dose independent | rect. | 13 | 9 |
| 570 | 21.34 | radiation | 1 | 1440 | > th | dose dependent | rect. | 8 | 11 |
| 587 | 21.34 | radiation | 1 | 1440 | > th | dose dependent | rect. | 16 | 21 |
| 605 | 21.35 | radiation | 40 | 1440 | < th | dose dependent | rect. | 2 | 18 |
| 620 | 21.36 | radiation | 40 | 1440 | < th | dose dependent | no | NA | NA |
| 686 | 21.36 | radiation | 40 | 1440 | < th | dose dependent | rect. | 23 | 20 |
| 697 | 21.36 | radiation | 40 | 1440 | < th | dose dependent | rect. | 21 | 21 |
| 718 | 21.36 | radiation | 40 | 1440 | < th | dose dependent | rect. | 19 | 23 |
| 749 | 21.37 | radiation | 1 | 1440 | > th | dose dependent | sin | 0 | NA |
| 881 | 21.38 | radiation | 40 | 1440 | < th | dose dependent | rect. | 10 | 23 |