Os05g0516800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Ras-related protein RIC2.
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Os05g0516800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Ras-related protein RIC2.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 74.08 | 0.404 | 3.25 | 0.0709 | 0.207 | -0.254 | -0.161 | -0.783 | -0.01 | 6.86 | 1001 | 4494 | -- | -- |
| 74.66 | 0.402 | 3.26 | 0.0337 | 0.209 | -0.362 | -0.158 | -- | -0.012 | 6.81 | 1000 | 4470 | -- | -- |
| 74.13 | 0.401 | 3.25 | 0.069 | 0.208 | -0.263 | -- | -0.795 | -0.00771 | 7 | 1001 | 4498 | -- | -- |
| 74.69 | 0.403 | 3.26 | 0.0366 | 0.208 | -0.363 | -- | -- | -0.00753 | 6.75 | 999.9 | 4402 | -- | -- |
| 76.38 | 0.407 | 3.26 | 0.0725 | -- | -0.259 | -- | -0.793 | -0.00552 | -- | 1001 | 4498 | -- | -- |
| 77.82 | 0.414 | 3.27 | 0.0973 | 0.206 | -- | -0.164 | -- | -0.0391 | 6.86 | -- | -- | -- | -- |
| 77.88 | 0.413 | 3.27 | 0.0948 | 0.206 | -- | -- | -- | -0.0385 | 7.05 | -- | -- | -- | -- |
| 76.92 | 0.408 | 3.27 | 0.0407 | -- | -0.363 | -- | -- | -0.00293 | -- | 999.8 | 4396 | -- | -- |
| 74.7 | 0.403 | 3.26 | -- | 0.208 | -0.37 | -- | -- | -0.0102 | 6.98 | 999.7 | 4396 | -- | -- |
| 80.1 | 0.418 | 3.27 | 0.0988 | -- | -- | -- | -- | -0.0348 | -- | -- | -- | -- | -- |
| 78.12 | 0.413 | 3.27 | -- | 0.207 | -- | -- | -- | -0.049 | 7.03 | -- | -- | -- | -- |
| 76.96 | 0.409 | 3.27 | -- | -- | -0.368 | -- | -- | -0.00495 | -- | 999.8 | 4396 | -- | -- |
| 80.36 | 0.418 | 3.27 | -- | -- | -- | -- | -- | -0.0457 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 58.40 | radiation | 20.0 | 90 | > th | dose independent | rect. | 6 | 1 |
| 15 | 58.40 | radiation | 20.0 | 90 | > th | dose dependent | rect. | 6 | 1 |
| 29 | 58.96 | wind | 5.0 | 90 | > th | dose dependent | rect. | 7 | 1 |
| 32 | 58.99 | wind | 5.0 | 90 | > th | dose independent | rect. | 6 | 2 |
| 43 | 59.90 | wind | 5.0 | 30 | > th | dose dependent | rect. | 1 | 7 |
| 57 | 61.14 | wind | 5.0 | 10 | > th | dose independent | rect. | 1 | 7 |
| 63 | 61.30 | wind | 5.0 | 10 | > th | dose independent | rect. | 7 | 1 |
| 77 | 63.76 | humidity | 80.0 | 90 | < th | dose dependent | rect. | 6 | 2 |
| 151 | 67.38 | humidity | 80.0 | 90 | < th | dose independent | rect. | 6 | 2 |
| 174 | 68.71 | temperature | 20.0 | 270 | < th | dose dependent | rect. | 4 | 1 |
| 180 | 69.08 | humidity | 80.0 | 10 | < th | dose independent | rect. | 6 | 2 |
| 199 | 69.85 | temperature | 25.0 | 10 | < th | dose dependent | rect. | 6 | 7 |
| 202 | 69.90 | temperature | 20.0 | 90 | < th | dose independent | rect. | 6 | 1 |
| 223 | 70.07 | humidity | 90.0 | 720 | < th | dose dependent | rect. | 6 | 1 |
| 226 | 70.11 | humidity | 90.0 | 720 | < th | dose independent | rect. | 24 | 8 |
| 230 | 70.12 | temperature | 25.0 | 30 | < th | dose dependent | rect. | 6 | 2 |
| 241 | 70.24 | radiation | 1.0 | 10 | > th | dose dependent | rect. | 18 | 1 |
| 291 | 70.63 | temperature | 20.0 | 270 | < th | dose dependent | rect. | 4 | 13 |
| 349 | 71.16 | humidity | 90.0 | 720 | < th | dose independent | rect. | 5 | 1 |
| 358 | 71.27 | humidity | 80.0 | 30 | < th | dose dependent | rect. | 20 | 12 |
| 363 | 71.33 | humidity | 90.0 | 720 | < th | dose independent | rect. | 2 | 1 |
| 372 | 71.42 | humidity | 90.0 | 720 | < th | dose dependent | rect. | 3 | 5 |
| 412 | 71.62 | humidity | 90.0 | 720 | > th | dose independent | rect. | 1 | 5 |
| 414 | 71.63 | humidity | 90.0 | 720 | < th | dose independent | rect. | 24 | 17 |
| 417 | 71.64 | humidity | 60.0 | 10 | < th | dose dependent | rect. | 18 | 1 |
| 438 | 71.69 | humidity | 90.0 | 720 | < th | dose independent | rect. | 24 | 14 |
| 441 | 71.73 | humidity | 80.0 | 10 | < th | dose independent | rect. | 2 | 6 |
| 475 | 71.94 | humidity | 90.0 | 720 | < th | dose dependent | rect. | 24 | 8 |
| 505 | 72.14 | humidity | 80.0 | 10 | < th | dose independent | rect. | 24 | 8 |
| 561 | 72.34 | temperature | 20.0 | 270 | < th | dose dependent | sin | 2 | NA |
| 562 | 72.35 | humidity | 90.0 | 720 | < th | dose independent | sin | 7 | NA |
| 627 | 72.61 | humidity | 80.0 | 720 | > th | dose dependent | rect. | 24 | 8 |
| 687 | 72.92 | precipitation | 0.1 | 1440 | > th | dose dependent | rect. | 17 | 1 |
| 757 | 73.12 | humidity | 90.0 | 720 | > th | dose independent | rect. | 24 | 18 |
| 780 | 73.18 | humidity | 90.0 | 720 | > th | dose independent | rect. | 24 | 14 |
| 781 | 73.19 | humidity | 80.0 | 720 | > th | dose dependent | rect. | 3 | 1 |
| 909 | 73.40 | humidity | 80.0 | 720 | > th | dose dependent | rect. | 23 | 15 |
| 932 | 73.46 | atmosphere | 1005.0 | 10 | > th | dose dependent | rect. | 7 | 1 |
| 934 | 73.46 | atmosphere | 1005.0 | 10 | > th | dose dependent | rect. | 2 | 3 |
| 936 | 73.47 | atmosphere | 1005.0 | 30 | > th | dose independent | rect. | 7 | 1 |
| 944 | 73.49 | humidity | 90.0 | 720 | > th | dose independent | sin | 7 | NA |