Os01g0848700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Ras-related protein Rab11C.
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Os01g0848700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Ras-related protein Rab11C.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 264.06 | 0.763 | 7.86 | -3.08 | 2.6 | -1.56 | -1.03 | 0.568 | -0.969 | 8.94 | 80 | 722 | -- | -- |
| 264.55 | 0.758 | 7.86 | -3.05 | 2.59 | -1.56 | -0.777 | -- | -0.968 | 8.95 | 80.32 | 727 | -- | -- |
| 266.94 | 0.761 | 7.85 | -3.02 | 2.58 | -1.55 | -- | 0.149 | -0.971 | 8.9 | 80 | 728 | -- | -- |
| 266.58 | 0.76 | 7.85 | -3.07 | 2.59 | -1.55 | -- | -- | -0.963 | 8.95 | 80.43 | 727 | -- | -- |
| 426.94 | 0.962 | 7.96 | -3.31 | -- | -1.32 | -- | 0.576 | -1.09 | -- | 73.96 | 1492 | -- | -- |
| 315.84 | 0.833 | 7.87 | -2.98 | 1.68 | -- | -0.735 | -- | -0.913 | 9.38 | -- | -- | -- | -- |
| 317.81 | 0.835 | 7.87 | -3.01 | 1.68 | -- | -- | -- | -0.914 | 9.37 | -- | -- | -- | -- |
| 427.79 | 0.963 | 7.95 | -3.24 | -- | -1.29 | -- | -- | -1.07 | -- | 73.99 | 1488 | -- | -- |
| 492.36 | 1.03 | 7.8 | -- | 2.53 | -1.55 | -- | -- | -0.736 | 9.23 | 85 | 728 | -- | -- |
| 483.24 | 1.03 | 7.92 | -3.02 | -- | -- | -- | -- | -0.908 | -- | -- | -- | -- | -- |
| 556.72 | 1.1 | 7.79 | -- | 1.68 | -- | -- | -- | -0.579 | 9.51 | -- | -- | -- | -- |
| 656.08 | 1.19 | 7.88 | -- | -- | -2.32 | -- | -- | -0.786 | -- | 84 | 1504 | -- | -- |
| 723.79 | 1.26 | 7.84 | -- | -- | -- | -- | -- | -0.573 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 260.45 | humidity | 80 | 720 | < th | dose independent | rect. | 11 | 21 |
| 2 | 260.54 | humidity | 80 | 720 | > th | dose independent | rect. | 10 | 17 |
| 4 | 260.61 | humidity | 80 | 720 | < th | dose independent | rect. | 18 | 21 |
| 5 | 260.72 | humidity | 80 | 720 | > th | dose independent | rect. | 11 | 21 |
| 6 | 260.77 | humidity | 80 | 720 | > th | dose independent | rect. | 5 | 22 |
| 11 | 261.32 | humidity | 80 | 720 | > th | dose independent | rect. | 18 | 22 |
| 12 | 261.71 | humidity | 80 | 720 | < th | dose independent | rect. | 11 | 16 |
| 24 | 262.30 | humidity | 70 | 90 | > th | dose dependent | rect. | 12 | 15 |
| 30 | 262.41 | humidity | 90 | 720 | < th | dose dependent | rect. | 18 | 14 |
| 38 | 262.60 | humidity | 80 | 1440 | < th | dose independent | rect. | 20 | 19 |
| 69 | 263.62 | humidity | 80 | 720 | > th | dose independent | rect. | 23 | 23 |
| 86 | 264.06 | humidity | 80 | 720 | > th | dose independent | no | NA | NA |
| 121 | 265.12 | humidity | 80 | 720 | < th | dose independent | rect. | 24 | 22 |
| 126 | 265.32 | humidity | 80 | 720 | > th | dose independent | rect. | 2 | 23 |
| 138 | 265.50 | humidity | 80 | 720 | < th | dose independent | sin | 17 | NA |
| 142 | 265.61 | humidity | 80 | 720 | < th | dose independent | rect. | 6 | 22 |
| 159 | 265.78 | humidity | 80 | 720 | > th | dose independent | sin | 16 | NA |
| 177 | 265.96 | humidity | 80 | 720 | < th | dose independent | no | NA | NA |
| 207 | 266.36 | humidity | 90 | 720 | < th | dose dependent | rect. | 18 | 10 |
| 219 | 266.45 | humidity | 70 | 720 | > th | dose dependent | rect. | 5 | 22 |
| 232 | 266.69 | humidity | 80 | 10 | > th | dose dependent | rect. | 7 | 21 |
| 235 | 266.74 | humidity | 80 | 1440 | > th | dose independent | rect. | 24 | 16 |
| 248 | 266.86 | humidity | 70 | 720 | > th | dose dependent | rect. | 11 | 16 |
| 276 | 267.15 | humidity | 80 | 1440 | < th | dose independent | rect. | 1 | 14 |
| 305 | 267.60 | humidity | 70 | 90 | > th | dose dependent | rect. | 9 | 18 |
| 306 | 267.61 | humidity | 80 | 720 | < th | dose independent | rect. | 18 | 4 |
| 352 | 268.21 | humidity | 80 | 720 | < th | dose dependent | rect. | 20 | 1 |
| 377 | 268.46 | humidity | 70 | 10 | > th | dose dependent | rect. | 12 | 16 |
| 389 | 268.56 | humidity | 70 | 720 | > th | dose dependent | rect. | 11 | 21 |
| 423 | 268.94 | humidity | 90 | 1440 | < th | dose dependent | rect. | 20 | 20 |
| 426 | 268.96 | humidity | 70 | 720 | > th | dose dependent | rect. | 18 | 22 |
| 432 | 269.03 | humidity | 60 | 1440 | > th | dose dependent | rect. | 1 | 15 |
| 448 | 269.22 | humidity | 70 | 90 | > th | dose dependent | rect. | 19 | 8 |
| 451 | 269.24 | humidity | 80 | 720 | > th | dose independent | rect. | 18 | 9 |
| 462 | 269.33 | humidity | 90 | 720 | < th | dose dependent | sin | 12 | NA |
| 465 | 269.37 | humidity | 80 | 1440 | < th | dose independent | sin | 6 | NA |
| 496 | 269.56 | humidity | 80 | 720 | < th | dose independent | rect. | 20 | 1 |
| 532 | 269.86 | humidity | 90 | 720 | < th | dose dependent | rect. | 19 | 4 |
| 534 | 269.87 | humidity | 80 | 720 | < th | dose independent | rect. | 17 | 15 |
| 536 | 269.87 | humidity | 60 | 1440 | > th | dose dependent | rect. | 20 | 20 |
| 601 | 270.23 | wind | 9 | 90 | < th | dose dependent | rect. | 8 | 19 |
| 644 | 270.48 | humidity | 70 | 1440 | > th | dose dependent | rect. | 11 | 3 |
| 647 | 270.51 | humidity | 80 | 1440 | > th | dose independent | sin | 4 | NA |
| 662 | 270.59 | humidity | 70 | 720 | > th | dose dependent | no | NA | NA |
| 673 | 270.62 | humidity | 90 | 1440 | < th | dose dependent | rect. | 1 | 15 |
| 685 | 270.71 | humidity | 70 | 720 | > th | dose dependent | sin | 18 | NA |
| 688 | 270.72 | wind | 3 | 43200 | < th | dose dependent | rect. | 4 | 2 |
| 702 | 270.81 | humidity | 70 | 720 | > th | dose dependent | rect. | 2 | 23 |
| 723 | 270.91 | humidity | 80 | 720 | < th | dose independent | rect. | 18 | 9 |
| 830 | 271.49 | humidity | 90 | 1440 | < th | dose dependent | rect. | 11 | 23 |
| 870 | 271.69 | humidity | 70 | 720 | > th | dose dependent | rect. | 22 | 23 |
| 886 | 271.77 | humidity | 60 | 1440 | > th | dose dependent | sin | 3 | NA |
| 948 | 272.01 | wind | 9 | 270 | < th | dose dependent | rect. | 6 | 20 |
| 951 | 272.02 | humidity | 90 | 1440 | < th | dose dependent | sin | 6 | NA |
| 982 | 272.13 | humidity | 90 | 1440 | < th | dose dependent | rect. | 1 | 23 |
| 999 | 272.19 | humidity | 90 | 1440 | < th | dose dependent | no | NA | NA |