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Os06g0551400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Ras-related protein RIC2.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 12.8 (0.0158) R2 : 0.579
β1 : 1.27 (0.0578) R2dD : 0.465 R2D : 0.267
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.536 (0.0337) R2dN8 : 0.313 R2N8 : 0.114
σ : 0.296
deviance : 40.22
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
26.71 0.243 12.9 0.815 0.392 -0.235 0.39 -2.26 0.407 18.1 11.49 11951 -- --
30.58 0.26 12.8 1.22 0.35 0.347 0.323 -- 0.496 18.9 11.49 11951 -- --
26.86 0.241 12.9 0.922 0.391 -0.336 -- -2.23 0.446 18.1 10.91 17564 -- --
30.85 0.26 12.8 1.22 0.349 0.364 -- -- 0.494 19 11.49 11951 -- --
34.68 0.274 12.9 0.883 -- -0.353 -- -2.33 0.429 -- 12.3 17237 -- --
31.73 0.264 12.8 1.29 0.393 -- 0.399 -- 0.544 18.1 -- -- -- --
32.12 0.265 12.8 1.29 0.395 -- -- -- 0.545 18.1 -- -- -- --
37.1 0.285 12.8 1.19 -- 0.466 -- -- 0.474 -- 11.49 11951 -- --
44.74 0.312 12.9 -- 0.394 0.896 -- -- 0.132 17.9 8.278 46900 -- --
40.22 0.296 12.8 1.27 -- -- -- -- 0.536 -- -- -- -- --
75.68 0.407 12.8 -- 0.377 -- -- -- 0.402 18.2 -- -- -- --
52.69 0.338 12.9 -- -- 0.89 -- -- 0.123 -- 7.229 46694 -- --
83.06 0.425 12.8 -- -- -- -- -- 0.395 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 25.37 radiation 20 1440 < th dose independent rect. 11 2
2 25.39 wind 7 43200 < th dose dependent rect. 4 2
6 25.47 wind 1 43200 > th dose dependent rect. 4 2
7 25.52 humidity 70 43200 > th dose dependent rect. 20 1
10 25.58 wind 9 43200 < th dose dependent rect. 23 7
12 25.60 wind 1 43200 > th dose dependent rect. 23 7
14 25.62 wind 7 43200 < th dose dependent rect. 1 5
20 25.70 humidity 70 43200 > th dose dependent rect. 19 4
33 25.78 wind 1 43200 > th dose dependent rect. 1 2
67 25.85 wind 9 43200 < th dose dependent rect. 1 2
82 25.89 humidity 60 43200 > th dose dependent rect. 8 20
87 25.90 humidity 60 43200 > th dose dependent rect. 17 7
89 25.91 wind 1 43200 > th dose independent rect. 13 12
113 25.95 wind 1 43200 > th dose independent rect. 4 3
126 25.97 wind 3 43200 > th dose dependent rect. 7 2
129 25.97 wind 3 43200 > th dose dependent rect. 5 4
154 25.99 humidity 60 43200 > th dose dependent rect. 17 22
164 26.01 humidity 60 43200 > th dose dependent rect. 2 23
167 26.02 wind 1 43200 > th dose independent rect. 2 6
173 26.02 humidity 60 43200 > th dose dependent rect. 4 23
192 26.04 humidity 60 43200 > th dose dependent sin 16 NA
194 26.04 humidity 60 43200 > th dose dependent no NA NA
206 26.04 humidity 60 43200 > th dose dependent rect. 13 23
221 26.06 wind 1 43200 < th dose dependent rect. 2 6
290 26.10 humidity 60 43200 > th dose dependent rect. 11 23
299 26.11 humidity 50 43200 > th dose dependent rect. 13 13
324 26.13 wind 5 43200 > th dose independent rect. 8 2
344 26.14 temperature 20 43200 < th dose independent rect. 20 1
345 26.14 wind 5 43200 < th dose independent rect. 8 2
396 26.16 temperature 20 43200 > th dose independent rect. 20 1
397 26.16 humidity 70 43200 < th dose independent rect. 17 13
441 26.18 wind 1 43200 < th dose independent rect. 4 3
442 26.18 wind 1 43200 < th dose independent rect. 2 6
521 26.21 humidity 60 43200 > th dose dependent sin 4 NA
523 26.21 wind 5 14400 < th dose dependent rect. 14 1
547 26.22 wind 3 14400 > th dose independent rect. 13 2
548 26.22 wind 5 43200 < th dose independent rect. 4 6
562 26.23 wind 3 43200 > th dose independent rect. 5 1
567 26.23 wind 5 43200 > th dose independent rect. 5 5
570 26.23 wind 1 43200 < th dose independent rect. 13 12
576 26.23 humidity 60 43200 > th dose dependent rect. 2 12
578 26.23 humidity 50 43200 > th dose dependent rect. 1 14
618 26.25 wind 1 43200 > th dose independent rect. 10 1
624 26.25 humidity 70 43200 > th dose independent rect. 17 13
659 26.26 wind 1 43200 < th dose dependent rect. 9 16
667 26.27 wind 3 43200 < th dose independent rect. 5 1
668 26.27 wind 1 43200 < th dose independent rect. 10 1
670 26.27 radiation 10 43200 > th dose independent rect. 13 1
676 26.27 wind 1 43200 < th dose independent rect. 10 15
677 26.27 humidity 90 43200 < th dose dependent rect. 13 1
712 26.29 wind 3 14400 < th dose independent rect. 13 2
756 26.31 wind 1 43200 > th dose independent rect. 23 7
763 26.31 wind 1 43200 > th dose independent rect. 8 17
765 26.31 temperature 25 43200 < th dose dependent rect. 10 1
809 26.33 radiation 10 43200 > th dose independent rect. 7 4
817 26.33 humidity 80 43200 < th dose independent rect. 19 21
818 26.33 humidity 80 43200 > th dose independent rect. 19 22
885 26.36 radiation 10 4320 > th dose independent rect. 5 2
908 26.36 wind 9 43200 < th dose dependent rect. 7 2
928 26.37 wind 3 43200 > th dose dependent sin 7 NA
932 26.37 humidity 90 43200 < th dose dependent rect. 11 4
949 26.38 wind 1 43200 < th dose dependent rect. 10 1
972 26.39 humidity 80 43200 > th dose independent rect. 3 9