Os04g0470100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Small GTP binding protein Rab2.
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Os04g0470100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Small GTP binding protein Rab2.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 23.38 | 0.227 | 11.6 | -0.302 | 0.319 | 0.576 | 0.414 | -0.222 | -0.00411 | 20.2 | 28.1 | 9 | -- | -- |
| 23.51 | 0.226 | 11.6 | -0.298 | 0.312 | 0.593 | 0.262 | -- | -0.00325 | 19.9 | 28.1 | 8 | -- | -- |
| 23.71 | 0.227 | 11.6 | -0.294 | 0.318 | 0.585 | -- | -0.0285 | -0.00409 | 20.1 | 28.15 | 8 | -- | -- |
| 23.71 | 0.227 | 11.6 | -0.305 | 0.315 | 0.585 | -- | -- | -0.00305 | 20.1 | 28.15 | 8 | -- | -- |
| 27.73 | 0.245 | 11.6 | -0.312 | -- | 0.675 | -- | -0.0251 | -0.00592 | -- | 23.33 | 9 | -- | -- |
| 29.87 | 0.256 | 11.6 | -0.319 | 0.738 | -- | 0.203 | -- | -0.00719 | 22.6 | -- | -- | -- | -- |
| 30.04 | 0.257 | 11.6 | -0.327 | 0.737 | -- | -- | -- | -0.00787 | 22.6 | -- | -- | -- | -- |
| 27.65 | 0.245 | 11.6 | -0.316 | -- | 0.657 | -- | -- | -0.00753 | -- | 20.59 | 8 | -- | -- |
| 26.16 | 0.238 | 11.6 | -- | 0.308 | 0.6 | -- | -- | 0.031 | 19.9 | 28.15 | 8 | -- | -- |
| 63.47 | 0.372 | 11.6 | -0.313 | -- | -- | -- | -- | -0.00423 | -- | -- | -- | -- | -- |
| 32.86 | 0.268 | 11.6 | -- | 0.735 | -- | -- | -- | 0.0285 | 22.6 | -- | -- | -- | -- |
| 30.22 | 0.256 | 11.6 | -- | -- | 0.679 | -- | -- | 0.0241 | -- | 23.45 | 8 | -- | -- |
| 66.06 | 0.379 | 11.6 | -- | -- | -- | -- | -- | 0.0305 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 21.69 | radiation | 30 | 10 | < th | dose dependent | rect. | 6 | 14 |
| 16 | 22.64 | radiation | 10 | 30 | < th | dose independent | rect. | 6 | 14 |
| 19 | 22.75 | radiation | 30 | 90 | < th | dose dependent | rect. | 12 | 23 |
| 29 | 22.96 | radiation | 10 | 270 | > th | dose independent | rect. | 6 | 9 |
| 44 | 22.99 | radiation | 30 | 270 | < th | dose dependent | rect. | 21 | 22 |
| 48 | 23.08 | temperature | 15 | 30 | > th | dose dependent | rect. | 20 | 21 |
| 51 | 23.11 | radiation | 30 | 270 | < th | dose dependent | rect. | 3 | 15 |
| 81 | 23.23 | radiation | 20 | 30 | < th | dose dependent | sin | 22 | NA |
| 90 | 23.30 | radiation | 10 | 30 | > th | dose independent | rect. | 9 | 9 |
| 106 | 23.31 | radiation | 20 | 270 | < th | dose dependent | sin | 3 | NA |
| 111 | 23.33 | radiation | 20 | 90 | < th | dose independent | rect. | 12 | 23 |
| 113 | 23.34 | radiation | 10 | 90 | > th | dose independent | sin | 23 | NA |
| 124 | 23.39 | radiation | 30 | 10 | < th | dose dependent | rect. | 13 | 23 |
| 132 | 23.44 | radiation | 10 | 30 | > th | dose independent | sin | 21 | NA |
| 152 | 23.50 | radiation | 10 | 270 | > th | dose independent | sin | 3 | NA |
| 155 | 23.50 | radiation | 30 | 10 | < th | dose dependent | no | NA | NA |
| 156 | 23.50 | humidity | 60 | 10 | > th | dose dependent | rect. | 6 | 14 |
| 166 | 23.53 | radiation | 30 | 10 | < th | dose dependent | rect. | 17 | 23 |
| 171 | 23.54 | radiation | 30 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 192 | 23.64 | radiation | 30 | 90 | < th | dose dependent | no | NA | NA |
| 198 | 23.65 | radiation | 30 | 10 | < th | dose dependent | rect. | 11 | 23 |
| 200 | 23.66 | radiation | 1 | 270 | > th | dose dependent | rect. | 5 | 9 |
| 212 | 23.67 | radiation | 1 | 90 | > th | dose dependent | rect. | 7 | 10 |
| 230 | 23.71 | temperature | 10 | 270 | > th | dose dependent | rect. | 18 | 21 |
| 279 | 23.75 | radiation | 20 | 270 | < th | dose independent | rect. | 2 | 16 |
| 293 | 23.76 | radiation | 30 | 10 | < th | dose dependent | rect. | 21 | 23 |
| 296 | 23.77 | radiation | 20 | 30 | < th | dose dependent | rect. | 13 | 7 |
| 298 | 23.78 | radiation | 20 | 270 | < th | dose independent | rect. | 22 | 21 |
| 305 | 23.78 | radiation | 30 | 10 | < th | dose dependent | rect. | 23 | 23 |
| 310 | 23.79 | radiation | 1 | 90 | > th | dose dependent | rect. | 7 | 23 |
| 312 | 23.79 | radiation | 30 | 90 | < th | dose dependent | rect. | 15 | 23 |
| 340 | 23.84 | radiation | 30 | 90 | < th | dose dependent | rect. | 15 | 20 |
| 347 | 23.86 | atmosphere | 1000 | 10 | > th | dose independent | rect. | 6 | 14 |
| 353 | 23.87 | radiation | 1 | 90 | > th | dose dependent | rect. | 5 | 12 |
| 387 | 23.88 | radiation | 30 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 390 | 23.89 | radiation | 10 | 30 | < th | dose independent | rect. | 12 | 8 |
| 429 | 23.91 | radiation | 1 | 90 | > th | dose dependent | sin | 22 | NA |
| 435 | 23.92 | radiation | 1 | 270 | > th | dose dependent | sin | 4 | NA |
| 445 | 23.93 | radiation | 10 | 30 | < th | dose independent | sin | 21 | NA |
| 548 | 24.02 | radiation | 1 | 90 | > th | dose dependent | no | NA | NA |
| 617 | 24.04 | radiation | 40 | 270 | < th | dose independent | rect. | 3 | 15 |
| 650 | 24.07 | humidity | 80 | 90 | < th | dose independent | rect. | 7 | 10 |
| 679 | 24.10 | radiation | 20 | 90 | > th | dose independent | no | NA | NA |
| 815 | 24.12 | humidity | 90 | 90 | < th | dose dependent | rect. | 20 | 20 |
| 902 | 24.20 | radiation | 40 | 90 | < th | dose independent | rect. | 5 | 15 |
| 910 | 24.20 | radiation | 20 | 90 | < th | dose independent | rect. | 15 | 20 |
| 915 | 24.20 | temperature | 10 | 270 | > th | dose dependent | rect. | 7 | 7 |
| 965 | 24.23 | radiation | 30 | 90 | < th | dose dependent | rect. | 9 | 23 |
| 971 | 24.24 | radiation | 20 | 90 | > th | dose independent | rect. | 11 | 23 |
| 976 | 24.24 | humidity | 90 | 90 | < th | dose dependent | rect. | 22 | 18 |
| 981 | 24.25 | temperature | 15 | 30 | > th | dose dependent | rect. | 9 | 8 |
| 988 | 24.25 | radiation | 1 | 10 | > th | dose dependent | rect. | 8 | 22 |
| 990 | 24.25 | radiation | 20 | 10 | < th | dose dependent | rect. | 9 | 23 |
| 999 | 24.27 | humidity | 80 | 30 | < th | dose independent | rect. | 9 | 8 |