Os06g0714600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Ras GTPase family protein.
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Os06g0714600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Ras GTPase family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 127.25 | 0.53 | 6.28 | 1.96 | 0.924 | 1.46 | 0.432 | -0.938 | 0.197 | 5.44 | 24.14 | 1340 | -- | -- |
| 127.67 | 0.526 | 6.25 | 2.21 | 0.932 | 1.36 | 0.402 | -- | 0.258 | 5.37 | 24.07 | 1358 | -- | -- |
| 127.68 | 0.526 | 6.28 | 1.97 | 0.934 | 1.45 | -- | -0.885 | 0.195 | 5.31 | 24.14 | 1358 | -- | -- |
| 128.01 | 0.527 | 6.25 | 2.22 | 0.94 | 1.35 | -- | -- | 0.26 | 5.24 | 24.12 | 1379 | -- | -- |
| 170.95 | 0.609 | 6.29 | 1.99 | -- | 1.62 | -- | -0.812 | 0.199 | -- | 24 | 1291 | -- | -- |
| 196.63 | 0.657 | 6.19 | 2.69 | 1.06 | -- | 0.493 | -- | 0.486 | 4.91 | -- | -- | -- | -- |
| 197.24 | 0.658 | 6.2 | 2.68 | 1.07 | -- | -- | -- | 0.483 | 4.85 | -- | -- | -- | -- |
| 171.3 | 0.61 | 6.26 | 2.21 | -- | 1.54 | -- | -- | 0.26 | -- | 24 | 1291 | -- | -- |
| 201.14 | 0.661 | 6.41 | -- | 0.945 | 2.49 | -- | -- | -0.542 | 5.67 | 15.66 | 8375 | -- | -- |
| 257.18 | 0.749 | 6.21 | 2.72 | -- | -- | -- | -- | 0.511 | -- | -- | -- | -- | -- |
| 387.11 | 0.92 | 6.26 | -- | 1.11 | -- | -- | -- | 0.184 | 4.78 | -- | -- | -- | -- |
| 209.25 | 0.674 | 6.45 | -- | -- | 2.43 | -- | -- | -0.571 | -- | 15.47 | 47324 | -- | -- |
| 452.86 | 0.993 | 6.27 | -- | -- | -- | -- | -- | 0.208 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 121.51 | temperature | 25 | 1440 | > th | dose dependent | rect. | 15 | 1 |
| 47 | 125.52 | temperature | 25 | 1440 | > th | dose dependent | sin | 21 | NA |
| 291 | 127.62 | temperature | 25 | 1440 | > th | dose dependent | no | NA | NA |
| 542 | 130.89 | temperature | 10 | 1440 | > th | dose dependent | sin | 22 | NA |
| 644 | 131.97 | temperature | 25 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 699 | 132.58 | temperature | 25 | 4320 | < th | dose independent | rect. | 6 | 7 |
| 732 | 132.89 | temperature | 25 | 4320 | > th | dose independent | rect. | 6 | 7 |
| 761 | 133.09 | temperature | 25 | 4320 | > th | dose independent | rect. | 7 | 5 |
| 781 | 133.24 | temperature | 25 | 14400 | < th | dose independent | rect. | 18 | 2 |
| 791 | 133.30 | temperature | 25 | 14400 | > th | dose independent | rect. | 18 | 2 |
| 828 | 133.57 | temperature | 30 | 14400 | < th | dose independent | rect. | 15 | 1 |
| 834 | 133.59 | temperature | 25 | 720 | > th | dose dependent | rect. | 18 | 17 |
| 862 | 133.77 | temperature | 30 | 14400 | > th | dose independent | rect. | 15 | 1 |
| 885 | 133.94 | temperature | 25 | 4320 | > th | dose independent | sin | 2 | NA |
| 888 | 133.95 | temperature | 25 | 4320 | < th | dose independent | rect. | 4 | 15 |
| 903 | 134.02 | temperature | 25 | 4320 | < th | dose independent | sin | 2 | NA |
| 909 | 134.04 | temperature | 25 | 4320 | > th | dose independent | rect. | 4 | 14 |