Os05g0341600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Ras-related protein Rab-21.
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Os05g0341600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Ras-related protein Rab-21.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 28.75 | 0.252 | 8.48 | -1.07 | 0.356 | -1.48 | -0.305 | -2.2 | -0.135 | 8.85 | 19.71 | 4494 | -- | -- |
| 29.72 | 0.254 | 8.53 | -1.04 | 0.382 | -0.543 | -0.363 | -- | -0.16 | 8.97 | 22.6 | 2359 | -- | -- |
| 28.92 | 0.25 | 8.48 | -1.11 | 0.352 | -1.65 | -- | -2.46 | -0.14 | 9.07 | 19.28 | 4464 | -- | -- |
| 29.96 | 0.255 | 8.53 | -1.04 | 0.386 | -0.558 | -- | -- | -0.157 | 9.34 | 22.75 | 2433 | -- | -- |
| 36.09 | 0.28 | 8.47 | -1.1 | -- | -1.92 | -- | -3.02 | -0.122 | -- | 19 | 4449 | -- | -- |
| 34.42 | 0.275 | 8.51 | -0.799 | 0.361 | -- | -0.353 | -- | -0.0383 | 8.68 | -- | -- | -- | -- |
| 34.76 | 0.276 | 8.51 | -0.809 | 0.361 | -- | -- | -- | -0.0374 | 9.04 | -- | -- | -- | -- |
| 37.52 | 0.285 | 8.54 | -1.08 | -- | -0.626 | -- | -- | -0.158 | -- | 21.8 | 2953 | -- | -- |
| 51.63 | 0.336 | 8.49 | -- | 0.351 | -0.185 | -- | -- | 0.03 | 8.65 | 34.2 | 26 | -- | -- |
| 42.24 | 0.304 | 8.52 | -0.81 | -- | -- | -- | -- | -0.0353 | -- | -- | -- | -- | -- |
| 52.01 | 0.337 | 8.49 | -- | 0.36 | -- | -- | -- | 0.0527 | 9.21 | -- | -- | -- | -- |
| 58.49 | 0.356 | 8.5 | -- | -- | -0.262 | -- | -- | 0.0252 | -- | 34.96 | 2 | -- | -- |
| 59.54 | 0.36 | 8.5 | -- | -- | -- | -- | -- | 0.0545 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 25.23 | wind | 3 | 43200 | < th | dose dependent | rect. | 1 | 1 |
| 2 | 25.31 | wind | 3 | 43200 | < th | dose independent | rect. | 1 | 1 |
| 4 | 25.71 | wind | 3 | 43200 | > th | dose independent | rect. | 1 | 2 |
| 8 | 25.97 | wind | 3 | 14400 | < th | dose independent | rect. | 4 | 4 |
| 9 | 25.98 | wind | 3 | 14400 | < th | dose independent | rect. | 1 | 7 |
| 11 | 25.99 | wind | 3 | 14400 | < th | dose independent | rect. | 5 | 1 |
| 16 | 26.05 | wind | 3 | 14400 | > th | dose independent | rect. | 4 | 4 |
| 20 | 26.08 | wind | 3 | 14400 | > th | dose independent | rect. | 5 | 1 |
| 21 | 26.08 | wind | 3 | 14400 | > th | dose independent | rect. | 1 | 7 |
| 40 | 26.18 | wind | 3 | 14400 | < th | dose independent | sin | 7 | NA |
| 46 | 26.19 | wind | 5 | 14400 | < th | dose dependent | rect. | 4 | 4 |
| 59 | 26.22 | wind | 5 | 14400 | < th | dose dependent | rect. | 5 | 2 |
| 61 | 26.22 | wind | 5 | 14400 | < th | dose dependent | rect. | 22 | 10 |
| 73 | 26.24 | wind | 1 | 14400 | > th | dose dependent | rect. | 5 | 3 |
| 85 | 26.27 | wind | 3 | 14400 | > th | dose independent | sin | 7 | NA |
| 88 | 26.27 | wind | 3 | 14400 | < th | dose independent | rect. | 24 | 14 |
| 110 | 26.30 | wind | 3 | 14400 | < th | dose dependent | rect. | 22 | 15 |
| 141 | 26.33 | wind | 5 | 14400 | < th | dose dependent | rect. | 1 | 8 |
| 160 | 26.35 | wind | 3 | 14400 | < th | dose dependent | rect. | 24 | 13 |
| 167 | 26.36 | wind | 3 | 14400 | < th | dose dependent | sin | 7 | NA |
| 174 | 26.37 | wind | 3 | 14400 | > th | dose independent | rect. | 24 | 14 |
| 216 | 26.41 | wind | 1 | 14400 | > th | dose dependent | rect. | 22 | 10 |
| 280 | 26.47 | wind | 3 | 14400 | < th | dose dependent | rect. | 4 | 9 |
| 316 | 26.50 | wind | 1 | 14400 | > th | dose dependent | rect. | 1 | 8 |
| 357 | 26.55 | wind | 9 | 14400 | < th | dose dependent | sin | 7 | NA |
| 402 | 26.59 | wind | 1 | 43200 | < th | dose dependent | rect. | 12 | 1 |
| 432 | 26.62 | wind | 1 | 14400 | > th | dose dependent | sin | 7 | NA |
| 475 | 26.66 | wind | 3 | 43200 | < th | dose dependent | rect. | 21 | 7 |
| 547 | 26.73 | wind | 1 | 43200 | > th | dose dependent | rect. | 1 | 1 |
| 649 | 26.84 | wind | 1 | 43200 | < th | dose dependent | rect. | 10 | 3 |
| 821 | 27.07 | humidity | 90 | 14400 | < th | dose dependent | rect. | 3 | 1 |
| 910 | 27.19 | wind | 1 | 43200 | < th | dose independent | rect. | 11 | 2 |
| 947 | 27.23 | wind | 9 | 14400 | < th | dose independent | rect. | 5 | 8 |
| 964 | 27.25 | wind | 1 | 43200 | > th | dose independent | rect. | 11 | 2 |
| 983 | 27.28 | humidity | 80 | 14400 | > th | dose independent | rect. | 6 | 1 |