Os12g0631100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Ras small GTPase, Ras type family protein.
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Os12g0631100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Ras small GTPase, Ras type family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 25.04 | 0.235 | 12.1 | -0.358 | 0.438 | 0.383 | -0.0489 | -0.801 | -0.237 | 2.04 | 22.25 | 984 | -- | -- |
| 26.84 | 0.241 | 12.1 | -0.0801 | 0.427 | 0.384 | -0.236 | -- | -0.175 | 1.84 | 22.2 | 961 | -- | -- |
| 25.04 | 0.233 | 12.1 | -0.357 | 0.439 | 0.382 | -- | -0.808 | -0.237 | 2.06 | 22.26 | 961 | -- | -- |
| 26.97 | 0.242 | 12.1 | -0.0929 | 0.435 | 0.382 | -- | -- | -0.176 | 2.04 | 22.2 | 961 | -- | -- |
| 36.27 | 0.28 | 12.1 | -0.357 | -- | 0.462 | -- | -0.793 | -0.241 | -- | 22.2 | 989 | -- | -- |
| 33.02 | 0.269 | 12.1 | 0.03 | 0.492 | -- | -0.215 | -- | -0.0446 | 1.71 | -- | -- | -- | -- |
| 33.2 | 0.27 | 12.1 | 0.0369 | 0.492 | -- | -- | -- | -0.0433 | 1.7 | -- | -- | -- | -- |
| 38.09 | 0.287 | 12.1 | -0.103 | -- | 0.471 | -- | -- | -0.192 | -- | 22.2 | 962 | -- | -- |
| 27.12 | 0.243 | 12.1 | -- | 0.439 | 0.363 | -- | -- | -0.157 | 2.11 | 22.2 | 837 | -- | -- |
| 47.93 | 0.324 | 12.1 | 0.0569 | -- | -- | -- | -- | -0.0323 | -- | -- | -- | -- | -- |
| 33.23 | 0.27 | 12.1 | -- | 0.493 | -- | -- | -- | -0.0474 | 1.7 | -- | -- | -- | -- |
| 38.36 | 0.288 | 12.1 | -- | -- | 0.451 | -- | -- | -0.175 | -- | 22.26 | 958 | -- | -- |
| 48.02 | 0.323 | 12.1 | -- | -- | -- | -- | -- | -0.0387 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 24.22 | temperature | 15 | 720 | > th | dose dependent | rect. | 19 | 14 |
| 5 | 24.46 | temperature | 20 | 720 | > th | dose dependent | sin | 9 | NA |
| 16 | 24.54 | humidity | 90 | 14400 | > th | dose dependent | rect. | 5 | 1 |
| 17 | 24.56 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 28 | 24.57 | humidity | 90 | 14400 | > th | dose dependent | rect. | 16 | 14 |
| 42 | 24.64 | humidity | 90 | 14400 | > th | dose dependent | sin | 10 | NA |
| 52 | 24.67 | humidity | 90 | 14400 | > th | dose dependent | rect. | 21 | 11 |
| 74 | 24.71 | humidity | 90 | 14400 | > th | dose dependent | rect. | 2 | 7 |
| 79 | 24.71 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 21 |
| 82 | 24.72 | humidity | 90 | 14400 | > th | dose dependent | rect. | 21 | 6 |
| 98 | 24.74 | temperature | 15 | 720 | > th | dose dependent | rect. | 14 | 19 |
| 120 | 24.78 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 21 |
| 158 | 24.86 | humidity | 90 | 14400 | > th | dose dependent | rect. | 3 | 5 |
| 166 | 24.87 | humidity | 90 | 14400 | > th | dose dependent | rect. | 4 | 3 |
| 169 | 24.88 | wind | 3 | 43200 | > th | dose independent | rect. | 13 | 1 |
| 219 | 24.95 | temperature | 25 | 720 | < th | dose dependent | rect. | 15 | 19 |
| 230 | 24.99 | radiation | 40 | 43200 | < th | dose dependent | rect. | 21 | 8 |
| 234 | 25.00 | humidity | 90 | 14400 | > th | dose dependent | rect. | 23 | 2 |
| 260 | 25.03 | radiation | 10 | 14400 | < th | dose dependent | rect. | 2 | 3 |
| 269 | 25.04 | wind | 3 | 43200 | < th | dose independent | rect. | 13 | 1 |
| 282 | 25.06 | humidity | 70 | 43200 | > th | dose independent | rect. | 19 | 1 |
| 328 | 25.14 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 11 |
| 330 | 25.14 | radiation | 20 | 14400 | < th | dose dependent | rect. | 21 | 8 |
| 335 | 25.15 | wind | 1 | 43200 | > th | dose independent | rect. | 9 | 2 |
| 342 | 25.15 | temperature | 25 | 720 | < th | dose dependent | rect. | 17 | 21 |
| 353 | 25.17 | humidity | 90 | 14400 | > th | dose independent | rect. | 18 | 11 |
| 388 | 25.21 | humidity | 70 | 43200 | < th | dose independent | rect. | 19 | 1 |
| 391 | 25.21 | wind | 3 | 43200 | < th | dose dependent | rect. | 20 | 1 |
| 420 | 25.24 | humidity | 90 | 14400 | > th | dose independent | rect. | 20 | 8 |
| 423 | 25.24 | humidity | 80 | 43200 | < th | dose dependent | rect. | 19 | 2 |
| 487 | 25.30 | wind | 5 | 43200 | < th | dose dependent | rect. | 13 | 1 |
| 517 | 25.33 | temperature | 25 | 720 | < th | dose dependent | sin | 11 | NA |
| 532 | 25.34 | temperature | 25 | 720 | < th | dose dependent | no | NA | NA |
| 577 | 25.37 | wind | 3 | 43200 | < th | dose independent | rect. | 20 | 1 |
| 672 | 25.42 | humidity | 90 | 14400 | > th | dose dependent | no | NA | NA |
| 698 | 25.44 | wind | 3 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 704 | 25.44 | wind | 1 | 43200 | < th | dose dependent | rect. | 11 | 1 |
| 721 | 25.45 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 1 |
| 723 | 25.45 | temperature | 10 | 1440 | > th | dose dependent | rect. | 17 | 6 |
| 781 | 25.48 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 7 |
| 791 | 25.48 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 6 |
| 793 | 25.48 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 8 |
| 813 | 25.49 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 1 |
| 815 | 25.49 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 4 |
| 893 | 25.52 | humidity | 90 | 14400 | > th | dose independent | sin | 10 | NA |
| 896 | 25.52 | radiation | 1 | 43200 | < th | dose dependent | rect. | 7 | 1 |
| 945 | 25.54 | temperature | 10 | 1440 | > th | dose dependent | rect. | 18 | 1 |
| 987 | 25.56 | humidity | 70 | 43200 | < th | dose independent | rect. | 19 | 4 |
| 990 | 25.56 | wind | 1 | 43200 | > th | dose dependent | rect. | 14 | 1 |
| 992 | 25.56 | wind | 1 | 43200 | > th | dose dependent | rect. | 13 | 3 |