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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os06g0687100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Ras GTPase family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.99 (0.0107) R2 : 0.00449
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0322 (0.0225) R2dN8 : 0.00579 R2N8 : 0.00449
σ : 0.201
deviance : 18.57
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
17.81 0.198 2.99 -0.000365 0.0586 0.00598 -0.0875 -0.599 0.0354 6.26 70.98 5907 -- --
18.25 0.199 3 -0.0269 0.0597 -0.0631 -0.0879 -- 0.00756 5.59 81.97 8415 -- --
17.82 0.197 2.99 -0.00126 0.058 0.00513 -- -0.604 0.0349 6.19 70.99 5986 -- --
18.25 0.199 3 -0.0211 0.0613 -0.0814 -- -- -0.00441 5.78 82.3 7359 -- --
18 0.198 2.99 0.00112 -- 0.015 -- -0.625 0.0384 -- 70.38 5990 -- --
18.33 0.201 2.99 -0.0363 0.0606 -- -0.103 -- 0.0265 5.94 -- -- -- --
18.35 0.201 2.99 -0.0372 0.06 -- -- -- 0.0269 5.99 -- -- -- --
18.44 0.2 3 -0.0237 -- -0.0755 -- -- -0.00279 -- 82.25 7235 -- --
18.26 0.199 3 -- 0.0621 -0.083 -- -- -0.00366 5.9 82.25 7361 -- --
18.54 0.201 2.99 -0.0354 -- -- -- -- 0.0283 -- -- -- -- --
18.39 0.201 2.99 -- 0.0595 -- -- -- 0.0311 6.02 -- -- -- --
18.45 0.2 3 -- -- -0.0812 -- -- -0.00181 -- 82.3 7233 -- --
18.57 0.201 2.99 -- -- -- -- -- 0.0322 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 17.41 humidity 90.0 720 < th dose dependent rect. 3 1
2 17.42 wind 1.0 10 < th dose independent rect. 2 1
3 17.42 wind 1.0 30 < th dose dependent rect. 2 1
4 17.43 wind 9.0 30 < th dose independent rect. 3 23
10 17.48 atmosphere 1005.0 10 > th dose dependent rect. 2 1
16 17.49 humidity 50.0 30 > th dose dependent rect. 2 1
21 17.49 atmosphere 1015.0 30 < th dose dependent rect. 2 1
22 17.50 wind 1.0 30 > th dose independent sin 18 NA
26 17.50 temperature 10.0 30 > th dose independent rect. 2 1
28 17.50 temperature 25.0 30 < th dose independent rect. 2 1
30 17.50 humidity 50.0 30 > th dose independent rect. 2 1
35 17.50 atmosphere 995.0 30 > th dose independent rect. 2 1
36 17.50 atmosphere 1010.0 30 < th dose independent rect. 2 1
38 17.50 radiation 1.0 30 < th dose independent rect. 2 1
43 17.50 precipitation 0.1 30 < th dose independent rect. 2 1
44 17.50 temperature 10.0 30 > th dose independent rect. 3 23
45 17.50 temperature 10.0 30 > th dose dependent rect. 2 1
47 17.50 temperature 30.0 30 < th dose dependent rect. 2 1
48 17.50 atmosphere 995.0 30 > th dose dependent rect. 2 1
50 17.50 radiation 1.0 30 < th dose dependent rect. 2 1
55 17.50 precipitation 0.1 30 < th dose dependent rect. 2 1
65 17.51 humidity 90.0 90 < th dose dependent rect. 2 5
112 17.58 wind 1.0 30 > th dose independent rect. 2 1
115 17.58 humidity 80.0 1440 > th dose independent rect. 24 3
117 17.59 humidity 80.0 1440 > th dose independent rect. 2 1
119 17.60 humidity 80.0 720 < th dose independent rect. 2 1
144 17.60 wind 1.0 720 > th dose independent rect. 15 8
166 17.61 humidity 90.0 90 < th dose independent rect. 2 2
189 17.64 wind 1.0 4320 < th dose dependent rect. 16 6
201 17.69 wind 1.0 30 < th dose independent rect. 23 1
202 17.69 temperature 10.0 43200 > th dose independent rect. 9 1
207 17.70 wind 1.0 30 > th dose independent rect. 21 23
216 17.72 radiation 1.0 720 > th dose independent rect. 14 1
219 17.72 atmosphere 1005.0 30 > th dose independent rect. 23 3
221 17.72 humidity 90.0 90 < th dose dependent rect. 2 1
225 17.72 wind 1.0 4320 < th dose dependent rect. 19 3
234 17.73 atmosphere 995.0 30 > th dose independent rect. 3 23
235 17.73 humidity 90.0 10 < th dose dependent rect. 3 1
241 17.74 wind 1.0 14400 < th dose independent rect. 4 3
250 17.74 wind 1.0 14400 > th dose independent rect. 4 7
252 17.74 wind 1.0 30 < th dose independent rect. 9 18
254 17.74 humidity 90.0 270 > th dose dependent rect. 20 1
261 17.74 humidity 90.0 270 > th dose dependent rect. 16 7
263 17.75 wind 1.0 4320 < th dose independent rect. 21 1
266 17.75 wind 1.0 14400 > th dose independent rect. 4 3
272 17.75 wind 1.0 30 < th dose independent rect. 11 13
284 17.76 humidity 70.0 4320 > th dose independent rect. 10 1
286 17.76 humidity 70.0 4320 < th dose independent rect. 10 1
287 17.76 wind 1.0 1440 < th dose independent rect. 16 2
290 17.76 wind 1.0 14400 < th dose independent rect. 4 7
294 17.76 atmosphere 1005.0 30 > th dose independent rect. 23 12
296 17.76 wind 1.0 30 < th dose independent rect. 9 15
298 17.76 atmosphere 995.0 720 > th dose independent rect. 23 16
308 17.77 wind 1.0 1440 > th dose independent rect. 16 1
309 17.77 temperature 20.0 270 < th dose independent rect. 5 2
310 17.77 wind 1.0 4320 < th dose independent rect. 19 3
316 17.77 wind 1.0 14400 > th dose independent rect. 2 9
319 17.77 wind 1.0 30 < th dose independent rect. 11 16
322 17.77 temperature 15.0 14400 < th dose dependent rect. 8 2
345 17.78 precipitation 0.1 720 < th dose independent rect. 15 8
356 17.78 precipitation 0.1 720 < th dose dependent rect. 15 8
357 17.79 wind 9.0 14400 > th dose independent rect. 24 1
359 17.79 temperature 15.0 14400 < th dose independent rect. 7 1
364 17.79 temperature 10.0 43200 < th dose independent rect. 20 1
365 17.79 humidity 60.0 43200 < th dose independent rect. 2 1
395 17.79 wind 1.0 14400 < th dose independent rect. 2 9
408 17.79 wind 9.0 14400 > th dose dependent rect. 24 1
415 17.79 temperature 10.0 43200 < th dose dependent rect. 20 1
416 17.79 humidity 60.0 43200 < th dose dependent rect. 2 1
417 17.79 wind 1.0 1440 < th dose dependent rect. 16 2
457 17.80 radiation 40.0 4320 > th dose independent rect. 9 2
479 17.80 atmosphere 1005.0 10 < th dose independent rect. 23 12
488 17.80 wind 1.0 14400 < th dose dependent rect. 4 4
509 17.81 humidity 90.0 90 < th dose independent rect. 23 2
511 17.81 temperature 20.0 270 < th dose independent rect. 3 4
514 17.81 wind 1.0 14400 < th dose independent rect. 2 6
519 17.81 temperature 10.0 720 > th dose independent rect. 15 8
532 17.81 temperature 10.0 720 > th dose independent rect. 23 16
534 17.81 wind 1.0 30 > th dose independent rect. 8 23
552 17.82 wind 1.0 4320 > th dose independent rect. 21 1
555 17.82 humidity 60.0 4320 < th dose independent rect. 12 1
566 17.82 wind 1.0 14400 > th dose independent rect. 2 6
567 17.82 wind 1.0 4320 < th dose independent rect. 16 6
572 17.82 atmosphere 1005.0 10 > th dose independent rect. 23 8
581 17.82 precipitation 0.1 720 < th dose independent rect. 11 16
602 17.82 precipitation 0.1 720 < th dose dependent rect. 11 16
604 17.83 humidity 70.0 43200 > th dose independent rect. 5 1
606 17.83 radiation 20.0 1440 > th dose independent rect. 14 1
610 17.83 precipitation 0.1 1440 > th dose independent rect. 10 3
616 17.83 radiation 40.0 720 < th dose independent rect. 15 8
627 17.83 wind 1.0 14400 > th dose independent rect. 4 13
635 17.83 precipitation 0.1 1440 > th dose dependent rect. 10 3
639 17.83 wind 1.0 14400 < th dose dependent rect. 2 6
640 17.83 wind 1.0 14400 < th dose dependent rect. 4 7
645 17.84 temperature 20.0 4320 < th dose independent rect. 15 1
655 17.84 temperature 25.0 90 < th dose independent rect. 6 4
672 17.84 temperature 25.0 30 > th dose independent rect. 23 12
675 17.84 wind 1.0 14400 < th dose independent rect. 4 13
679 17.84 wind 1.0 30 > th dose independent rect. 10 16
680 17.84 wind 1.0 14400 > th dose independent rect. 4 18
681 17.84 wind 1.0 14400 < th dose independent rect. 4 18
684 17.84 humidity 50.0 4320 > th dose dependent rect. 11 1
685 17.84 humidity 80.0 4320 < th dose dependent rect. 11 1
713 17.85 temperature 10.0 720 > th dose independent rect. 3 8
714 17.85 temperature 25.0 10 < th dose independent rect. 2 8
715 17.85 atmosphere 995.0 720 > th dose independent rect. 3 8
729 17.85 wind 1.0 14400 > th dose independent rect. 2 15
734 17.85 temperature 10.0 720 > th dose independent rect. 11 16
751 17.85 wind 1.0 14400 < th dose dependent rect. 2 9
752 17.85 radiation 1.0 720 < th dose dependent rect. 18 9
754 17.85 radiation 10.0 10 > th dose dependent rect. 16 18
755 17.86 wind 1.0 14400 > th dose independent sin 3 NA
761 17.86 humidity 90.0 1440 < th dose independent rect. 11 1
762 17.86 atmosphere 1005.0 90 < th dose independent rect. 8 1
771 17.86 wind 1.0 30 > th dose independent rect. 23 7
774 17.86 humidity 70.0 1440 > th dose independent rect. 22 9
776 17.86 radiation 30.0 1440 < th dose independent rect. 22 9
787 17.86 wind 1.0 14400 < th dose independent rect. 2 15
788 17.86 atmosphere 1005.0 270 < th dose independent rect. 19 15
792 17.86 radiation 20.0 10 > th dose independent rect. 16 18
793 17.86 wind 1.0 14400 > th dose independent rect. 2 20
794 17.86 wind 1.0 14400 < th dose independent rect. 2 20
797 17.86 humidity 80.0 1440 > th dose dependent rect. 3 1
799 17.86 humidity 50.0 1440 > th dose dependent rect. 2 2
803 17.86 radiation 10.0 10 > th dose dependent rect. 7 3
832 17.87 wind 1.0 14400 < th dose independent sin 4 NA
833 17.87 radiation 30.0 30 < th dose independent sin 11 NA
834 17.87 wind 3.0 14400 > th dose independent rect. 11 1
836 17.87 wind 3.0 14400 < th dose independent rect. 11 1
837 17.87 temperature 20.0 4320 > th dose independent rect. 14 1
838 17.87 atmosphere 1005.0 90 < th dose independent rect. 23 1
843 17.87 wind 1.0 14400 > th dose independent rect. 7 3
848 17.87 radiation 20.0 10 > th dose independent rect. 7 3
877 17.87 atmosphere 1005.0 10 > th dose independent rect. 23 10
913 17.87 wind 1.0 14400 < th dose independent rect. 2 18
918 17.87 humidity 90.0 90 < th dose independent rect. 1 20
922 17.87 wind 1.0 30 > th dose independent rect. 3 23
923 17.87 precipitation 0.1 30 < th dose independent rect. 3 23
944 17.87 radiation 1.0 720 < th dose dependent rect. 13 14
946 17.87 precipitation 0.1 30 < th dose dependent rect. 3 23
949 17.88 wind 1.0 14400 < th dose independent sin 2 NA
966 17.88 atmosphere 1005.0 10 < th dose independent rect. 23 1
975 17.88 precipitation 0.1 1440 > th dose independent rect. 12 1
979 17.88 humidity 70.0 1440 > th dose independent rect. 5 2
986 17.88 wind 1.0 30 > th dose independent rect. 23 3