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Os05g0280200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Ras-related protein Rab11A.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11.4 (0.0177) R2 : 0.555
β1 : -- (--) R2dD : -- R2D : --
β2 : 1.08 (0.0458) R2dC : 0.547 R2C : 0.544
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.11 (0.0371) R2dN8 : 0.011 R2N8 : 0.00784
σ : 0.333
deviance : 50.59
__
_____
C
peak time of C : 7.13
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
44.44 0.313 11.4 -0.43 1.07 -0.423 0.0242 0.405 0.0237 7.16 1015 4105 -- --
44.56 0.311 11.4 -0.428 1.07 -0.597 0.0112 -- 0.0216 7.14 1015 4154 -- --
44.43 0.31 11.4 -0.416 1.07 -0.397 -- 0.428 0.0227 7.18 1014 4101 -- --
44.55 0.311 11.4 -0.42 1.07 -0.584 -- -- 0.0285 7.15 1015 4154 -- --
105.08 0.477 11.4 -0.422 -- -0.473 -- 0.414 0.0263 -- 1014 4202 -- --
47.56 0.323 11.4 -0.339 1.09 -- -0.00164 -- 0.0718 7.11 -- -- -- --
47.56 0.323 11.4 -0.339 1.09 -- -- -- 0.0718 7.11 -- -- -- --
105.16 0.478 11.4 -0.401 -- -0.623 -- -- 0.0353 -- 1015 4214 -- --
48.42 0.324 11.4 -- 1.07 -0.36 -- -- 0.0826 7.16 1014 4081 -- --
109.69 0.489 11.4 -0.318 -- -- -- -- 0.0911 -- -- -- -- --
50.59 0.333 11.4 -- 1.08 -- -- -- 0.11 7.13 -- -- -- --
108.78 0.486 11.4 -- -- -0.46 -- -- 0.0839 -- 1014 4172 -- --
112.37 0.495 11.4 -- -- -- -- -- 0.126 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 38.21 radiation 1.0 10 < th dose dependent rect. 23 18
3 38.74 radiation 1.0 10 < th dose independent rect. 23 18
7 38.84 radiation 1.0 10 < th dose dependent rect. 23 15
9 39.13 radiation 1.0 10 < th dose dependent rect. 23 13
11 39.15 atmosphere 1000.0 10 > th dose independent rect. 5 18
14 39.22 wind 1.0 90 > th dose independent rect. 23 16
15 39.23 radiation 1.0 10 < th dose independent rect. 23 15
17 39.23 radiation 1.0 10 < th dose dependent rect. 23 9
21 39.25 radiation 1.0 10 < th dose dependent rect. 23 7
22 39.29 wind 1.0 270 < th dose independent rect. 4 1
24 39.32 temperature 15.0 270 > th dose independent rect. 1 21
28 39.40 precipitation 0.1 10 < th dose independent rect. 5 18
29 39.40 precipitation 0.1 10 < th dose dependent rect. 5 18
30 39.43 temperature 15.0 270 > th dose independent rect. 2 19
32 39.52 radiation 1.0 10 < th dose independent rect. 23 13
36 39.54 wind 9.0 10 < th dose independent rect. 23 6
37 39.54 temperature 10.0 10 > th dose independent rect. 23 6
38 39.54 temperature 30.0 10 < th dose independent rect. 23 6
39 39.54 humidity 50.0 10 > th dose independent rect. 23 6
42 39.54 atmosphere 995.0 10 > th dose independent rect. 23 6
43 39.54 radiation 1.0 10 < th dose independent rect. 23 6
48 39.54 temperature 10.0 10 > th dose independent rect. 5 18
50 39.54 atmosphere 1015.0 10 < th dose independent rect. 5 18
55 39.62 radiation 1.0 10 < th dose independent rect. 23 9
62 39.63 temperature 15.0 270 > th dose independent rect. 24 23
63 39.63 wind 3.0 90 < th dose dependent rect. 4 5
65 39.64 temperature 15.0 270 > th dose independent rect. 13 8
69 39.68 wind 1.0 30 > th dose independent rect. 23 6
76 39.73 radiation 1.0 10 > th dose independent sin 10 NA
80 39.76 atmosphere 995.0 270 > th dose independent rect. 13 8
83 39.79 humidity 50.0 30 > th dose dependent rect. 23 5
87 39.82 atmosphere 1010.0 270 < th dose independent rect. 13 8
90 39.88 wind 9.0 270 < th dose independent rect. 8 18
97 39.92 temperature 15.0 90 > th dose independent rect. 4 18
111 39.93 wind 9.0 10 < th dose independent rect. 5 18
120 39.93 radiation 40.0 270 < th dose dependent rect. 2 7
124 39.94 wind 9.0 270 < th dose independent rect. 9 16
125 39.94 temperature 15.0 270 > th dose independent rect. 15 16
139 40.01 precipitation 0.1 10 < th dose independent rect. 23 6
140 40.01 atmosphere 995.0 270 > th dose independent rect. 2 19
141 40.01 precipitation 0.1 10 < th dose dependent rect. 23 6
145 40.02 precipitation 0.1 270 < th dose independent rect. 2 6
146 40.02 precipitation 0.1 270 < th dose dependent rect. 2 6
150 40.03 humidity 50.0 270 > th dose dependent rect. 23 1
165 40.07 precipitation 0.1 270 < th dose independent rect. 1 8
166 40.07 atmosphere 995.0 270 > th dose independent rect. 3 16
176 40.07 precipitation 0.1 270 < th dose dependent rect. 1 8
178 40.08 radiation 1.0 10 < th dose dependent sin 10 NA
181 40.11 wind 9.0 270 < th dose independent rect. 21 16
184 40.12 wind 1.0 270 > th dose independent rect. 8 18
196 40.14 wind 9.0 270 < th dose independent rect. 6 21
197 40.14 wind 7.0 270 < th dose dependent rect. 3 3
204 40.16 radiation 20.0 270 < th dose independent rect. 2 6
209 40.17 atmosphere 995.0 270 > th dose independent rect. 15 16
210 40.17 precipitation 0.1 270 < th dose independent rect. 3 16
214 40.17 precipitation 0.1 270 < th dose dependent rect. 3 16
215 40.18 radiation 1.0 270 > th dose independent rect. 17 13
216 40.18 wind 1.0 270 < th dose dependent rect. 4 1
218 40.19 temperature 30.0 270 < th dose independent rect. 1 8
228 40.22 wind 7.0 270 < th dose independent rect. 23 1
230 40.22 temperature 10.0 270 > th dose independent rect. 23 1
231 40.22 temperature 30.0 270 < th dose independent rect. 23 1
232 40.22 humidity 50.0 270 > th dose independent rect. 23 1
235 40.22 atmosphere 995.0 270 > th dose independent rect. 23 1
236 40.22 radiation 1.0 270 < th dose independent rect. 23 1
241 40.22 precipitation 0.1 270 < th dose independent rect. 23 1
242 40.22 wind 7.0 270 < th dose independent rect. 2 6
245 40.22 radiation 1.0 270 < th dose dependent rect. 23 1
250 40.22 precipitation 0.1 270 < th dose dependent rect. 23 1
254 40.23 precipitation 0.1 270 < th dose independent rect. 2 19
262 40.23 precipitation 0.1 270 < th dose dependent rect. 2 19
277 40.24 wind 1.0 270 > th dose independent rect. 9 16
278 40.24 temperature 10.0 270 > th dose independent rect. 21 16
279 40.24 atmosphere 995.0 270 > th dose independent rect. 21 16
284 40.26 atmosphere 1010.0 270 < th dose independent rect. 2 6
285 40.26 radiation 40.0 90 < th dose independent rect. 3 8
288 40.27 humidity 50.0 270 > th dose independent rect. 21 16
292 40.28 temperature 10.0 270 > th dose independent rect. 2 6
294 40.28 temperature 30.0 270 < th dose independent rect. 2 6
295 40.28 humidity 50.0 270 > th dose independent rect. 2 6
297 40.28 atmosphere 995.0 270 > th dose independent rect. 2 6
300 40.28 temperature 10.0 270 > th dose independent rect. 8 18
301 40.28 atmosphere 1015.0 270 < th dose independent rect. 2 19
303 40.29 precipitation 0.1 270 < th dose independent rect. 3 3
304 40.29 radiation 40.0 270 < th dose independent rect. 2 6
305 40.29 wind 7.0 270 < th dose independent rect. 1 8
309 40.29 precipitation 0.1 270 < th dose dependent rect. 3 3
311 40.29 atmosphere 995.0 10 > th dose dependent rect. 23 6
319 40.30 precipitation 0.1 270 < th dose independent rect. 8 18
321 40.30 precipitation 0.1 270 < th dose dependent rect. 8 18
326 40.31 radiation 40.0 10 < th dose dependent rect. 5 18
329 40.32 wind 9.0 30 < th dose dependent rect. 23 5
335 40.34 wind 1.0 90 < th dose independent rect. 4 3
345 40.35 radiation 40.0 90 < th dose independent rect. 4 18
347 40.36 wind 1.0 90 < th dose independent rect. 4 6
349 40.36 temperature 10.0 270 > th dose independent rect. 1 8
351 40.36 humidity 50.0 270 > th dose independent rect. 1 8
352 40.36 atmosphere 995.0 270 > th dose independent rect. 1 8
353 40.36 atmosphere 1015.0 270 < th dose independent rect. 1 8
354 40.36 temperature 10.0 270 > th dose independent rect. 9 16
357 40.37 wind 5.0 10 < th dose dependent rect. 5 4
365 40.39 precipitation 0.1 270 < th dose independent rect. 13 8
367 40.39 radiation 40.0 90 < th dose independent rect. 3 20
371 40.39 precipitation 0.1 270 < th dose dependent rect. 13 8
374 40.40 wind 9.0 30 < th dose dependent rect. 4 19
385 40.41 precipitation 0.1 270 < th dose independent rect. 9 16
389 40.41 precipitation 0.1 270 < th dose dependent rect. 9 16
414 40.43 precipitation 0.1 270 < th dose independent rect. 1 21
417 40.43 precipitation 0.1 270 < th dose dependent rect. 1 21
419 40.44 precipitation 0.1 270 < th dose independent rect. 24 23
420 40.44 humidity 50.0 270 > th dose dependent rect. 2 6
423 40.44 precipitation 0.1 270 < th dose dependent rect. 24 23
425 40.45 precipitation 0.1 270 < th dose independent rect. 21 5
428 40.45 wind 9.0 270 < th dose dependent rect. 23 1
431 40.45 precipitation 0.1 270 < th dose dependent rect. 21 5
432 40.46 temperature 10.0 270 > th dose independent rect. 21 5
433 40.46 temperature 30.0 270 < th dose independent rect. 21 5
434 40.46 humidity 50.0 270 > th dose independent rect. 21 5
437 40.46 atmosphere 995.0 270 > th dose independent rect. 21 5
438 40.46 radiation 1.0 270 < th dose independent rect. 21 5
461 40.46 radiation 1.0 270 < th dose dependent rect. 21 5
477 40.47 wind 9.0 270 < th dose independent rect. 7 9
491 40.49 wind 1.0 90 < th dose independent rect. 4 18
498 40.49 radiation 1.0 270 < th dose dependent rect. 5 22
509 40.51 atmosphere 1015.0 270 < th dose independent rect. 1 21
514 40.52 precipitation 0.1 270 < th dose independent rect. 19 8
516 40.52 radiation 40.0 270 < th dose dependent rect. 3 4
517 40.52 precipitation 0.1 270 < th dose dependent rect. 19 8
525 40.54 wind 7.0 270 < th dose independent rect. 3 3
529 40.54 humidity 50.0 270 > th dose dependent rect. 1 8
535 40.55 temperature 10.0 270 > th dose dependent rect. 3 3
536 40.55 wind 1.0 90 < th dose dependent rect. 4 19
541 40.57 precipitation 0.1 270 < th dose independent rect. 21 16
548 40.57 precipitation 0.1 270 < th dose dependent rect. 21 16
562 40.58 wind 9.0 270 < th dose independent rect. 19 8
563 40.58 temperature 10.0 270 > th dose independent rect. 19 8
564 40.58 temperature 30.0 270 < th dose independent rect. 19 8
565 40.58 humidity 50.0 270 > th dose independent rect. 19 8
567 40.58 atmosphere 995.0 270 > th dose independent rect. 19 8
568 40.58 radiation 1.0 270 < th dose independent rect. 19 8
574 40.58 atmosphere 1015.0 270 < th dose independent rect. 3 16
580 40.58 temperature 10.0 270 > th dose dependent rect. 2 5
583 40.58 radiation 1.0 270 < th dose dependent rect. 19 8
590 40.59 radiation 40.0 270 < th dose independent rect. 12 9
592 40.60 temperature 25.0 270 < th dose independent rect. 3 2
607 40.60 humidity 50.0 270 > th dose dependent rect. 22 3
612 40.61 radiation 20.0 10 < th dose independent rect. 5 18
619 40.62 wind 7.0 270 < th dose independent rect. 22 3
624 40.62 wind 1.0 90 < th dose independent rect. 4 10
630 40.63 precipitation 0.1 270 < th dose independent rect. 22 3
634 40.63 precipitation 0.1 270 < th dose dependent rect. 22 3
644 40.64 temperature 10.0 270 > th dose independent rect. 22 3
646 40.64 temperature 30.0 270 < th dose independent rect. 22 3
647 40.64 humidity 50.0 270 > th dose independent rect. 22 3
650 40.64 atmosphere 995.0 270 > th dose independent rect. 22 3
651 40.64 radiation 1.0 270 < th dose independent rect. 22 3
670 40.64 wind 1.0 90 < th dose independent rect. 4 13
681 40.64 radiation 1.0 270 < th dose dependent rect. 22 3
687 40.64 temperature 10.0 10 > th dose dependent rect. 5 18
696 40.65 temperature 10.0 10 > th dose dependent rect. 23 6
704 40.66 radiation 40.0 10 < th dose independent rect. 5 18
708 40.66 wind 1.0 90 < th dose dependent rect. 4 10
709 40.66 wind 1.0 90 < th dose dependent rect. 4 13
730 40.68 radiation 1.0 10 < th dose independent sin 10 NA
732 40.68 wind 1.0 270 > th dose independent rect. 13 8
760 40.70 precipitation 0.1 270 < th dose independent rect. 15 16
773 40.70 precipitation 0.1 270 < th dose dependent rect. 15 16
782 40.72 atmosphere 1000.0 10 > th dose independent rect. 15 8
820 40.74 temperature 10.0 270 > th dose dependent rect. 14 7
835 40.75 wind 9.0 270 < th dose independent rect. 13 8
850 40.76 wind 1.0 270 > th dose independent rect. 21 5
874 40.77 temperature 10.0 270 > th dose independent rect. 7 8
875 40.77 atmosphere 1015.0 270 < th dose independent rect. 7 8
896 40.78 wind 5.0 30 < th dose dependent rect. 4 19
898 40.79 wind 1.0 270 > th dose independent rect. 7 8
910 40.80 wind 1.0 270 > th dose independent rect. 23 1
920 40.81 radiation 40.0 270 < th dose independent rect. 14 17
924 40.82 precipitation 0.1 270 < th dose independent rect. 7 8
933 40.82 precipitation 0.1 270 < th dose dependent rect. 7 8
936 40.83 temperature 20.0 10 > th dose independent rect. 5 4
950 40.84 atmosphere 995.0 10 > th dose dependent rect. 15 8
994 40.88 humidity 50.0 270 > th dose independent rect. 8 18