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Os05g0564400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to GTP-binding protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10.9 (0.0216) R2 : 0.033
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.18 (0.0456) R2dN8 : 0.0426 R2N8 : 0.033
σ : 0.408
deviance : 76.29
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
42.02 0.305 10.9 0.444 0.45 -0.458 -0.115 0.729 0.136 0.0377 1011 3954 -- --
43.39 0.307 10.9 0.602 0.445 -0.462 -0.141 -- 0.181 0.0375 1009 3945 -- --
42.08 0.302 10.9 0.45 0.45 -0.461 -- 0.735 0.137 0.0113 1011 3937 -- --
43.47 0.307 10.9 0.598 0.45 -0.468 -- -- 0.182 24 1009 3932 -- --
54.75 0.345 10.9 0.465 -- -0.501 -- 0.77 0.142 -- 1010 3736 -- --
49.02 0.328 10.9 0.704 0.459 -- -0.156 -- 0.252 0.236 -- -- -- --
49.12 0.328 10.9 0.71 0.46 -- -- -- 0.253 0.182 -- -- -- --
55.57 0.347 10.9 0.6 -- -0.566 -- -- 0.264 -- 1008 3189 -- --
47.27 0.32 10.9 -- 0.45 -0.625 -- -- -0.000454 0.138 1008 47520 -- --
62.43 0.369 10.9 0.725 -- -- -- -- 0.26 -- -- -- -- --
62.41 0.37 10.9 -- 0.47 -- -- -- 0.174 0.264 -- -- -- --
59.29 0.359 10.9 -- -- -0.716 -- -- 0.00775 -- 1007 43584 -- --
76.29 0.408 10.9 -- -- -- -- -- 0.18 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 37.11 temperature 10.0 270 > th dose dependent rect. 12 19
3 37.40 radiation 1.0 270 < th dose dependent rect. 8 18
5 37.41 radiation 1.0 270 < th dose dependent rect. 5 22
12 37.63 humidity 50.0 270 > th dose dependent rect. 7 18
13 37.68 radiation 1.0 270 < th dose independent rect. 8 18
25 37.96 temperature 15.0 270 > th dose independent rect. 14 16
29 38.01 radiation 1.0 90 < th dose dependent sin 13 NA
32 38.04 temperature 15.0 270 > th dose independent rect. 13 18
62 38.42 temperature 10.0 10 > th dose dependent rect. 14 18
83 38.70 wind 7.0 270 < th dose independent rect. 18 8
91 38.75 humidity 50.0 270 > th dose independent rect. 7 18
95 38.77 temperature 10.0 270 > th dose dependent rect. 12 9
100 38.80 radiation 1.0 270 > th dose independent rect. 12 18
103 38.82 temperature 10.0 43200 > th dose independent rect. 9 7
106 38.84 radiation 1.0 270 < th dose dependent sin 16 NA
113 38.89 humidity 50.0 270 > th dose dependent rect. 18 8
119 38.95 radiation 1.0 90 < th dose independent sin 13 NA
120 38.95 wind 5.0 270 < th dose independent rect. 7 6
123 38.97 humidity 50.0 270 > th dose independent rect. 7 6
125 38.98 radiation 1.0 270 > th dose independent rect. 11 20
133 39.02 radiation 1.0 90 > th dose independent sin 13 NA
147 39.08 temperature 15.0 270 > th dose independent rect. 2 16
166 39.18 humidity 50.0 270 > th dose independent rect. 6 8
169 39.19 wind 9.0 270 < th dose independent rect. 7 18
186 39.33 humidity 60.0 270 > th dose independent rect. 18 8
189 39.34 temperature 10.0 270 > th dose independent rect. 6 8
190 39.34 atmosphere 995.0 270 > th dose independent rect. 6 8
191 39.34 atmosphere 1015.0 270 < th dose independent rect. 6 8
193 39.34 temperature 15.0 10 > th dose independent rect. 16 16
200 39.38 humidity 80.0 270 > th dose independent rect. 7 18
202 39.39 radiation 1.0 270 < th dose independent rect. 18 8
203 39.40 precipitation 0.1 270 < th dose independent rect. 1 6
204 39.40 precipitation 0.1 270 < th dose independent rect. 6 8
207 39.40 atmosphere 1010.0 270 < th dose independent rect. 13 18
208 39.40 precipitation 0.1 270 < th dose dependent rect. 1 6
209 39.40 precipitation 0.1 270 < th dose dependent rect. 6 8
210 39.41 temperature 10.0 270 > th dose independent rect. 7 6
211 39.41 atmosphere 995.0 270 > th dose independent rect. 7 6
212 39.41 atmosphere 1015.0 270 < th dose independent rect. 7 6
220 39.43 wind 7.0 270 < th dose independent rect. 19 17
222 39.44 radiation 1.0 270 > th dose independent sin 16 NA
223 39.44 precipitation 0.1 270 < th dose independent rect. 7 6
226 39.44 precipitation 0.1 270 < th dose dependent rect. 7 6
232 39.45 temperature 10.0 270 > th dose independent rect. 18 8
233 39.45 temperature 30.0 270 < th dose independent rect. 18 8
235 39.45 radiation 20.0 270 < th dose independent rect. 18 8
239 39.45 atmosphere 1015.0 270 < th dose independent rect. 2 16
245 39.47 radiation 1.0 270 < th dose independent sin 16 NA
266 39.54 wind 9.0 270 < th dose independent rect. 1 6
267 39.54 temperature 10.0 270 > th dose independent rect. 1 6
269 39.54 temperature 30.0 270 < th dose independent rect. 1 6
270 39.54 humidity 50.0 270 > th dose independent rect. 1 6
272 39.54 atmosphere 995.0 270 > th dose independent rect. 1 6
273 39.54 atmosphere 1015.0 270 < th dose independent rect. 1 6
274 39.54 radiation 30.0 270 < th dose independent rect. 1 6
276 39.54 temperature 10.0 270 > th dose independent rect. 7 18
277 39.54 precipitation 0.1 270 < th dose independent rect. 13 18
278 39.54 precipitation 0.1 270 < th dose dependent rect. 13 18
285 39.57 wind 1.0 270 > th dose independent rect. 7 6
294 39.58 atmosphere 995.0 270 > th dose independent rect. 18 8
301 39.59 precipitation 0.1 270 < th dose independent rect. 14 16
303 39.59 humidity 50.0 270 > th dose independent rect. 19 17
304 39.59 wind 9.0 270 < th dose dependent rect. 7 6
306 39.59 precipitation 0.1 270 < th dose dependent rect. 14 16
322 39.64 precipitation 0.1 270 < th dose independent rect. 2 16
323 39.64 precipitation 0.1 270 < th dose independent rect. 7 18
327 39.64 precipitation 0.1 270 < th dose dependent rect. 2 16
328 39.64 precipitation 0.1 270 < th dose dependent rect. 7 18
339 39.67 radiation 40.0 270 < th dose dependent rect. 1 6
341 39.68 temperature 10.0 270 > th dose dependent rect. 7 5
343 39.69 radiation 1.0 90 > th dose independent rect. 16 15
359 39.74 wind 9.0 270 < th dose independent rect. 14 16
365 39.75 temperature 10.0 270 > th dose dependent rect. 6 7
375 39.79 radiation 1.0 270 > th dose independent rect. 12 7
389 39.79 wind 9.0 270 < th dose independent rect. 13 18
392 39.80 precipitation 0.1 270 < th dose independent rect. 18 8
394 39.80 precipitation 0.1 270 < th dose dependent rect. 18 8
478 39.94 wind 9.0 270 < th dose independent rect. 2 16
484 39.95 temperature 20.0 270 > th dose independent rect. 12 7
505 39.98 temperature 15.0 270 > th dose independent rect. 23 8
506 39.98 radiation 40.0 90 < th dose independent rect. 15 17
510 39.99 radiation 1.0 270 > th dose independent rect. 7 6
518 40.00 atmosphere 1010.0 270 < th dose independent rect. 12 7
552 40.04 temperature 10.0 270 > th dose independent rect. 12 7
556 40.04 atmosphere 995.0 10 > th dose independent rect. 8 8
557 40.04 temperature 10.0 270 > th dose independent rect. 19 17
558 40.04 atmosphere 995.0 270 > th dose independent rect. 19 17
561 40.05 atmosphere 995.0 270 > th dose independent rect. 13 18
595 40.11 atmosphere 995.0 270 > th dose independent rect. 7 18
608 40.12 wind 9.0 270 < th dose dependent rect. 1 6
609 40.12 humidity 50.0 270 > th dose dependent rect. 1 6
629 40.15 temperature 10.0 270 > th dose dependent rect. 1 6
630 40.15 atmosphere 1015.0 10 < th dose dependent rect. 8 6
655 40.20 humidity 50.0 270 > th dose dependent rect. 7 6
664 40.21 wind 1.0 270 > th dose independent rect. 7 18
668 40.22 temperature 10.0 10 > th dose dependent rect. 8 7
677 40.24 wind 3.0 270 > th dose independent rect. 12 7
680 40.24 humidity 80.0 270 < th dose independent rect. 12 8
692 40.26 humidity 70.0 14400 > th dose independent rect. 21 7
696 40.27 wind 1.0 10 > th dose independent rect. 8 7
725 40.32 wind 7.0 10 < th dose independent rect. 8 7
756 40.34 wind 1.0 270 > th dose dependent rect. 12 7
766 40.36 precipitation 0.1 270 < th dose independent rect. 12 7
767 40.36 radiation 1.0 4320 < th dose independent rect. 21 8
771 40.36 precipitation 0.1 270 < th dose dependent rect. 12 7
776 40.37 atmosphere 1015.0 270 < th dose dependent rect. 7 5
793 40.39 precipitation 0.1 10 < th dose independent rect. 15 17
797 40.39 precipitation 0.1 10 < th dose dependent rect. 15 17
815 40.41 atmosphere 995.0 270 > th dose independent rect. 2 16
827 40.42 atmosphere 1015.0 10 < th dose independent rect. 15 17
830 40.42 wind 7.0 270 < th dose independent rect. 17 21
844 40.44 wind 9.0 270 < th dose independent rect. 12 7
852 40.45 radiation 1.0 270 > th dose independent rect. 14 3
919 40.50 temperature 10.0 10 > th dose independent rect. 8 7
922 40.50 atmosphere 1015.0 10 < th dose independent rect. 8 7
923 40.50 precipitation 0.1 10 < th dose independent rect. 8 7
928 40.50 precipitation 0.1 10 < th dose dependent rect. 8 7
941 40.51 precipitation 0.1 270 < th dose independent rect. 19 17
945 40.51 precipitation 0.1 270 < th dose dependent rect. 19 17
951 40.52 radiation 40.0 10 < th dose independent rect. 14 18
960 40.54 temperature 15.0 1440 > th dose independent rect. 10 5