Os01g0714900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to RAB7A.
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Os01g0714900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to RAB7A.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 30.54 | 0.26 | 9.72 | -1.37 | 0.663 | 0.014 | -0.176 | -1.88 | -0.253 | 4.09 | 20.76 | 1798 | -- | -- |
| 35.52 | 0.278 | 9.65 | -1.06 | 0.697 | 0.394 | -0.00661 | -- | -0.173 | 4.36 | 18.45 | 3039 | -- | -- |
| 30.63 | 0.258 | 9.72 | -1.37 | 0.662 | 0.017 | -- | -1.88 | -0.253 | 4.09 | 20.77 | 1798 | -- | -- |
| 35.12 | 0.276 | 9.66 | -1.09 | 0.663 | 0.496 | -- | -- | -0.207 | 4 | 18.5 | 2995 | -- | -- |
| 54.38 | 0.343 | 9.72 | -1.38 | -- | 0.0114 | -- | -1.95 | -0.246 | -- | 20.8 | 1892 | -- | -- |
| 38.68 | 0.292 | 9.64 | -0.875 | 0.669 | -- | -0.133 | -- | -0.11 | 4.11 | -- | -- | -- | -- |
| 38.73 | 0.291 | 9.64 | -0.874 | 0.669 | -- | -- | -- | -0.11 | 4.12 | -- | -- | -- | -- |
| 57.37 | 0.353 | 9.67 | -1.15 | -- | 0.641 | -- | -- | -0.204 | -- | 18.5 | 2672 | -- | -- |
| 50.85 | 0.332 | 9.59 | -- | 0.669 | -0.462 | -- | -- | 0.11 | 4.11 | 20.56 | 15460 | -- | -- |
| 63.01 | 0.371 | 9.65 | -0.847 | -- | -- | -- | -- | -0.0918 | -- | -- | -- | -- | -- |
| 58.86 | 0.359 | 9.62 | -- | 0.652 | -- | -- | -- | -0.0123 | 4.14 | -- | -- | -- | -- |
| 68.81 | 0.386 | 9.58 | -- | -- | -0.53 | -- | -- | 0.187 | -- | 22.07 | 47520 | -- | -- |
| 81.92 | 0.422 | 9.62 | -- | -- | -- | -- | -- | 0.00218 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 29.54 | temperature | 30 | 1440 | < th | dose dependent | rect. | 20 | 1 |
| 2 | 29.59 | temperature | 10 | 1440 | > th | dose dependent | rect. | 20 | 1 |
| 15 | 30.03 | temperature | 20 | 1440 | > th | dose independent | rect. | 18 | 12 |
| 20 | 30.07 | temperature | 20 | 1440 | < th | dose independent | rect. | 19 | 11 |
| 25 | 30.11 | temperature | 20 | 1440 | > th | dose independent | rect. | 21 | 1 |
| 36 | 30.19 | temperature | 20 | 1440 | > th | dose independent | rect. | 12 | 18 |
| 48 | 30.24 | temperature | 20 | 1440 | < th | dose independent | rect. | 12 | 18 |
| 53 | 30.26 | temperature | 20 | 1440 | > th | dose independent | rect. | 15 | 15 |
| 64 | 30.30 | temperature | 20 | 1440 | > th | dose independent | sin | 13 | NA |
| 72 | 30.31 | temperature | 20 | 1440 | < th | dose independent | rect. | 15 | 15 |
| 94 | 30.38 | temperature | 25 | 1440 | < th | dose dependent | rect. | 19 | 8 |
| 95 | 30.38 | temperature | 10 | 1440 | > th | dose dependent | rect. | 18 | 9 |
| 98 | 30.39 | temperature | 20 | 1440 | < th | dose independent | sin | 13 | NA |
| 108 | 30.40 | temperature | 20 | 1440 | < th | dose independent | rect. | 21 | 1 |
| 171 | 30.47 | temperature | 20 | 4320 | > th | dose independent | rect. | 20 | 3 |
| 236 | 30.55 | temperature | 20 | 4320 | < th | dose independent | rect. | 20 | 3 |
| 279 | 30.59 | temperature | 20 | 1440 | > th | dose independent | rect. | 20 | 5 |
| 280 | 30.59 | temperature | 20 | 1440 | < th | dose independent | rect. | 20 | 5 |
| 345 | 30.68 | temperature | 30 | 1440 | < th | dose dependent | sin | 13 | NA |
| 354 | 30.69 | temperature | 10 | 1440 | > th | dose dependent | sin | 13 | NA |
| 451 | 30.80 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 454 | 30.80 | temperature | 20 | 1440 | > th | dose independent | rect. | 19 | 20 |
| 519 | 30.87 | temperature | 20 | 1440 | < th | dose independent | rect. | 19 | 20 |
| 593 | 30.94 | humidity | 90 | 14400 | > th | dose independent | rect. | 23 | 1 |
| 653 | 30.99 | humidity | 90 | 14400 | > th | dose dependent | rect. | 24 | 1 |
| 659 | 31.00 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 2 |
| 739 | 31.06 | temperature | 15 | 1440 | > th | dose dependent | rect. | 2 | 1 |
| 807 | 31.11 | temperature | 25 | 1440 | < th | dose dependent | rect. | 2 | 2 |
| 827 | 31.13 | temperature | 20 | 1440 | > th | dose independent | no | NA | NA |
| 897 | 31.18 | temperature | 20 | 1440 | < th | dose independent | rect. | 2 | 6 |
| 912 | 31.19 | temperature | 20 | 1440 | > th | dose independent | rect. | 1 | 7 |
| 919 | 31.19 | temperature | 20 | 1440 | > th | dose independent | rect. | 24 | 23 |
| 944 | 31.21 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 4 |
| 962 | 31.22 | temperature | 20 | 1440 | < th | dose independent | no | NA | NA |