Os03g0151900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Small GTP-binding protein.
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Os03g0151900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Small GTP-binding protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 55.82 | 0.351 | 11.3 | -1.54 | 1.24 | 1.04 | 0.642 | -2.63 | -0.349 | 6.02 | 21.2 | 1351 | -- | -- |
| 60.48 | 0.362 | 11.2 | -0.873 | 1.2 | 1.14 | 0.794 | -- | -0.185 | 6.04 | 16.19 | 1301 | -- | -- |
| 56.71 | 0.351 | 11.3 | -1.49 | 1.24 | 1.06 | -- | -2.56 | -0.347 | 6.06 | 21.3 | 1298 | -- | -- |
| 60.52 | 0.362 | 11.2 | -0.824 | 1.26 | 1.3 | -- | -- | -0.155 | 6.27 | 13.78 | 1152 | -- | -- |
| 135.59 | 0.542 | 11.3 | -1.61 | -- | 1.2 | -- | -2.92 | -0.401 | -- | 22.01 | 1303 | -- | -- |
| 86.11 | 0.435 | 11.1 | -0.43 | 1.29 | -- | 0.612 | -- | 0.0761 | 5.78 | -- | -- | -- | -- |
| 87.02 | 0.437 | 11.1 | -0.426 | 1.29 | -- | -- | -- | 0.0735 | 5.76 | -- | -- | -- | -- |
| 138.86 | 0.549 | 11.2 | -0.813 | -- | 1.43 | -- | -- | -0.15 | -- | 13.69 | 1310 | -- | -- |
| 75.59 | 0.405 | 11.2 | -- | 1.27 | 0.949 | -- | -- | -0.0209 | 6.22 | 14.52 | 1111 | -- | -- |
| 173.55 | 0.616 | 11.2 | -0.386 | -- | -- | -- | -- | 0.104 | -- | -- | -- | -- | -- |
| 91.81 | 0.448 | 11.1 | -- | 1.28 | -- | -- | -- | 0.121 | 5.77 | -- | -- | -- | -- |
| 154.55 | 0.579 | 11.2 | -- | -- | 1.08 | -- | -- | -0.0123 | -- | 12.83 | 1287 | -- | -- |
| 177.48 | 0.622 | 11.1 | -- | -- | -- | -- | -- | 0.147 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 53.77 | temperature | 25 | 1440 | > th | dose dependent | rect. | 15 | 2 |
| 3 | 54.00 | temperature | 20 | 1440 | > th | dose dependent | rect. | 13 | 9 |
| 75 | 55.04 | temperature | 20 | 1440 | > th | dose dependent | sin | 17 | NA |
| 138 | 55.51 | temperature | 10 | 1440 | > th | dose dependent | rect. | 14 | 5 |
| 166 | 55.64 | temperature | 10 | 720 | > th | dose dependent | rect. | 17 | 15 |
| 277 | 56.10 | temperature | 30 | 720 | < th | dose dependent | rect. | 15 | 19 |
| 342 | 56.33 | temperature | 10 | 720 | > th | dose dependent | rect. | 10 | 23 |
| 392 | 56.47 | temperature | 20 | 1440 | > th | dose dependent | rect. | 4 | 18 |
| 423 | 56.53 | temperature | 15 | 720 | > th | dose dependent | rect. | 17 | 22 |
| 464 | 56.62 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 23 |
| 480 | 56.66 | temperature | 15 | 720 | > th | dose dependent | rect. | 19 | 21 |
| 572 | 56.86 | temperature | 20 | 1440 | > th | dose dependent | no | NA | NA |
| 677 | 57.13 | temperature | 15 | 720 | > th | dose dependent | sin | 11 | NA |
| 706 | 57.21 | temperature | 10 | 720 | > th | dose dependent | rect. | 1 | 23 |
| 741 | 57.31 | temperature | 30 | 1440 | < th | dose dependent | rect. | 13 | 10 |
| 757 | 57.35 | temperature | 30 | 1440 | < th | dose dependent | rect. | 14 | 8 |
| 790 | 57.42 | temperature | 25 | 1440 | < th | dose independent | rect. | 14 | 10 |
| 895 | 57.55 | temperature | 25 | 1440 | > th | dose independent | rect. | 14 | 10 |