Os07g0634200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Rab GTP-binding protein Rab11a.
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Os07g0634200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Rab GTP-binding protein Rab11a.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 20.26 | 0.211 | 10.7 | -0.219 | 0.862 | 0.962 | -0.505 | -1.21 | -0.161 | 5.85 | 0.2331 | 693 | -- | -- |
| 20.52 | 0.211 | 10.7 | -0.185 | 0.874 | 0.96 | 0.464 | -- | -0.145 | 5.71 | 0.18 | 670 | -- | -- |
| 20.29 | 0.21 | 10.7 | -0.203 | 0.897 | 0.993 | -- | -0.658 | -0.166 | 5.71 | 0.2399 | 674 | -- | -- |
| 21.02 | 0.214 | 10.7 | -0.174 | 0.907 | 0.987 | -- | -- | -0.151 | 5.72 | 0.24 | 674 | -- | -- |
| 22.09 | 0.219 | 10.7 | -0.116 | -- | -0.193 | -- | 0.456 | -0.0341 | -- | 53.36 | 19759 | -- | -- |
| 23.53 | 0.227 | 10.7 | -0.097 | 0.118 | -- | 0.134 | -- | -0.107 | 8.58 | -- | -- | -- | -- |
| 23.57 | 0.227 | 10.7 | -0.092 | 0.117 | -- | -- | -- | -0.107 | 9.1 | -- | -- | -- | -- |
| 23.03 | 0.224 | 10.7 | -0.24 | -- | -0.231 | -- | -- | -0.14 | -- | 49.25 | 43821 | -- | -- |
| 21.82 | 0.218 | 10.7 | -- | 0.878 | 0.948 | -- | -- | -0.129 | 5.66 | 0.33 | 663 | -- | -- |
| 24.36 | 0.231 | 10.7 | -0.0923 | -- | -- | -- | -- | -0.106 | -- | -- | -- | -- | -- |
| 23.79 | 0.228 | 10.7 | -- | 0.117 | -- | -- | -- | -0.0968 | 9.16 | -- | -- | -- | -- |
| 23.45 | 0.226 | 10.7 | -- | -- | 0.101 | -- | -- | -0.0951 | -- | 0.33 | 663 | -- | -- |
| 24.58 | 0.231 | 10.7 | -- | -- | -- | -- | -- | -0.0961 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 19.93 | temperature | 20 | 720 | > th | dose dependent | rect. | 1 | 15 |
| 2 | 19.93 | radiation | 1 | 720 | < th | dose dependent | rect. | 22 | 23 |
| 3 | 19.97 | temperature | 20 | 720 | > th | dose dependent | rect. | 23 | 17 |
| 5 | 19.99 | temperature | 10 | 720 | > th | dose dependent | rect. | 4 | 13 |
| 29 | 20.13 | temperature | 25 | 30 | > th | dose independent | rect. | 5 | 15 |
| 32 | 20.14 | temperature | 20 | 720 | > th | dose dependent | sin | 4 | NA |
| 38 | 20.15 | temperature | 10 | 720 | > th | dose dependent | rect. | 6 | 10 |
| 75 | 20.28 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 20 |
| 84 | 20.33 | temperature | 15 | 270 | > th | dose dependent | rect. | 3 | 21 |
| 90 | 20.34 | temperature | 20 | 270 | > th | dose dependent | rect. | 4 | 18 |
| 95 | 20.36 | temperature | 10 | 720 | > th | dose dependent | sin | 1 | NA |
| 102 | 20.37 | radiation | 1 | 720 | < th | dose dependent | rect. | 18 | 23 |
| 114 | 20.40 | wind | 5 | 14400 | > th | dose dependent | rect. | 14 | 2 |
| 117 | 20.40 | radiation | 1 | 720 | < th | dose dependent | rect. | 5 | 14 |
| 132 | 20.42 | radiation | 1 | 4320 | < th | dose independent | rect. | 20 | 9 |
| 135 | 20.42 | temperature | 20 | 30 | > th | dose dependent | rect. | 6 | 14 |
| 144 | 20.43 | temperature | 10 | 720 | > th | dose dependent | rect. | 10 | 7 |
| 164 | 20.46 | wind | 3 | 43200 | < th | dose dependent | rect. | 20 | 1 |
| 168 | 20.46 | radiation | 1 | 720 | < th | dose dependent | rect. | 23 | 17 |
| 171 | 20.46 | radiation | 1 | 720 | < th | dose dependent | rect. | 15 | 23 |
| 178 | 20.48 | temperature | 25 | 30 | > th | dose independent | rect. | 1 | 19 |
| 179 | 20.48 | temperature | 15 | 720 | > th | dose dependent | rect. | 12 | 5 |
| 180 | 20.48 | radiation | 1 | 720 | < th | dose dependent | rect. | 4 | 16 |
| 198 | 20.49 | radiation | 1 | 720 | < th | dose dependent | rect. | 8 | 23 |
| 201 | 20.50 | radiation | 1 | 720 | < th | dose independent | rect. | 22 | 23 |
| 213 | 20.50 | radiation | 1 | 720 | < th | dose dependent | rect. | 20 | 23 |
| 215 | 20.51 | radiation | 1 | 720 | < th | dose dependent | no | NA | NA |
| 216 | 20.51 | temperature | 20 | 720 | > th | dose dependent | rect. | 3 | 6 |
| 228 | 20.52 | radiation | 1 | 720 | < th | dose dependent | rect. | 12 | 23 |
| 229 | 20.53 | wind | 5 | 14400 | > th | dose independent | rect. | 15 | 2 |
| 230 | 20.53 | wind | 7 | 14400 | < th | dose independent | rect. | 14 | 2 |
| 231 | 20.53 | temperature | 25 | 30 | < th | dose independent | rect. | 2 | 15 |
| 232 | 20.53 | radiation | 1 | 720 | > th | dose independent | rect. | 10 | 23 |
| 239 | 20.53 | radiation | 1 | 720 | < th | dose dependent | rect. | 2 | 19 |
| 241 | 20.53 | radiation | 1 | 720 | < th | dose dependent | rect. | 4 | 23 |
| 253 | 20.54 | temperature | 25 | 10 | > th | dose dependent | rect. | 12 | 23 |
| 254 | 20.54 | radiation | 1 | 720 | < th | dose dependent | rect. | 10 | 23 |
| 275 | 20.56 | wind | 9 | 43200 | > th | dose dependent | rect. | 19 | 2 |
| 284 | 20.57 | radiation | 1 | 4320 | > th | dose independent | rect. | 4 | 1 |
| 296 | 20.57 | temperature | 20 | 720 | > th | dose dependent | rect. | 6 | 1 |
| 297 | 20.57 | radiation | 1 | 4320 | > th | dose dependent | rect. | 4 | 1 |
| 355 | 20.61 | temperature | 20 | 720 | > th | dose dependent | rect. | 12 | 1 |
| 366 | 20.62 | wind | 9 | 43200 | > th | dose independent | rect. | 19 | 2 |
| 369 | 20.62 | radiation | 1 | 720 | < th | dose dependent | sin | 0 | NA |
| 403 | 20.65 | wind | 9 | 43200 | < th | dose independent | rect. | 19 | 2 |
| 406 | 20.65 | radiation | 1 | 1440 | < th | dose dependent | sin | 15 | NA |
| 430 | 20.66 | radiation | 1 | 1440 | < th | dose dependent | rect. | 8 | 11 |
| 435 | 20.66 | radiation | 1 | 1440 | < th | dose dependent | rect. | 15 | 14 |
| 455 | 20.67 | radiation | 1 | 1440 | < th | dose dependent | rect. | 15 | 4 |
| 456 | 20.67 | radiation | 1 | 1440 | < th | dose dependent | rect. | 15 | 6 |
| 475 | 20.68 | temperature | 25 | 720 | > th | dose independent | rect. | 6 | 9 |
| 481 | 20.68 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 4 |
| 483 | 20.68 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 8 |
| 493 | 20.68 | temperature | 30 | 270 | < th | dose dependent | rect. | 23 | 22 |
| 496 | 20.69 | wind | 5 | 14400 | < th | dose independent | rect. | 11 | 6 |
| 502 | 20.69 | temperature | 20 | 90 | > th | dose dependent | sin | 3 | NA |
| 506 | 20.69 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 6 |
| 509 | 20.69 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 10 |
| 541 | 20.70 | temperature | 30 | 90 | < th | dose dependent | rect. | 2 | 14 |
| 557 | 20.70 | radiation | 1 | 720 | < th | dose dependent | rect. | 2 | 23 |
| 569 | 20.71 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 1 |
| 608 | 20.72 | temperature | 30 | 1440 | < th | dose dependent | rect. | 15 | 1 |
| 615 | 20.72 | radiation | 10 | 4320 | < th | dose dependent | rect. | 20 | 9 |
| 739 | 20.76 | temperature | 25 | 270 | > th | dose independent | sin | 0 | NA |
| 756 | 20.76 | atmosphere | 1005 | 4320 | > th | dose dependent | rect. | 16 | 1 |
| 763 | 20.76 | wind | 3 | 43200 | > th | dose dependent | rect. | 16 | 5 |
| 781 | 20.76 | temperature | 25 | 10 | > th | dose dependent | rect. | 23 | 21 |
| 822 | 20.77 | temperature | 30 | 10 | < th | dose dependent | rect. | 7 | 23 |
| 883 | 20.78 | temperature | 10 | 10 | > th | dose dependent | rect. | 21 | 23 |
| 885 | 20.78 | temperature | 30 | 30 | < th | dose dependent | rect. | 9 | 23 |
| 893 | 20.79 | temperature | 25 | 10 | > th | dose dependent | sin | 4 | NA |
| 896 | 20.79 | wind | 9 | 4320 | > th | dose dependent | rect. | 12 | 2 |
| 938 | 20.80 | temperature | 25 | 270 | > th | dose dependent | rect. | 8 | 1 |
| 979 | 20.81 | radiation | 1 | 720 | < th | dose dependent | sin | 3 | NA |
| 980 | 20.81 | humidity | 60 | 43200 | < th | dose dependent | rect. | 18 | 1 |
| 981 | 20.81 | atmosphere | 1010 | 4320 | > th | dose dependent | rect. | 21 | 1 |
| 996 | 20.81 | temperature | 30 | 270 | < th | dose dependent | rect. | 11 | 10 |