Os01g0667600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to GTP-binding protein.
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Os01g0667600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to GTP-binding protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 39.21 | 0.294 | 13.7 | 0.305 | 1.25 | -0.783 | 0.057 | 0.0996 | 0.223 | 23.3 | 25.6 | 1116 | -- | -- |
| 39.2 | 0.292 | 13.7 | 0.283 | 1.26 | -0.782 | 0.059 | -- | 0.228 | 23.3 | 25.4 | 1109 | -- | -- |
| 39.18 | 0.292 | 13.7 | 0.297 | 1.29 | -0.833 | -- | 0.0929 | 0.232 | 23.2 | 25.3 | 1029 | -- | -- |
| 39.18 | 0.292 | 13.7 | 0.281 | 1.29 | -0.824 | -- | -- | 0.228 | 23.2 | 25.3 | 1029 | -- | -- |
| 103.99 | 0.478 | 13.7 | 0.392 | -- | -1.21 | -- | 1.51 | 0.276 | -- | 25.3 | 1029 | -- | -- |
| 58.72 | 0.359 | 13.8 | 0.0538 | 1.09 | -- | -0.106 | -- | 0.162 | 23.2 | -- | -- | -- | -- |
| 58.77 | 0.359 | 13.8 | 0.0581 | 1.09 | -- | -- | -- | 0.162 | 23.2 | -- | -- | -- | -- |
| 104.96 | 0.479 | 13.7 | 0.23 | -- | -1.1 | -- | -- | 0.234 | -- | 25.3 | 1029 | -- | -- |
| 41.13 | 0.299 | 13.8 | -- | 1.29 | -0.779 | -- | -- | 0.189 | 23.1 | 25.4 | 998 | -- | -- |
| 133.39 | 0.54 | 13.7 | 0.0847 | -- | -- | -- | -- | 0.172 | -- | -- | -- | -- | -- |
| 58.86 | 0.359 | 13.8 | -- | 1.09 | -- | -- | -- | 0.156 | 23.2 | -- | -- | -- | -- |
| 106.32 | 0.482 | 13.7 | -- | -- | -1.06 | -- | -- | 0.207 | -- | 25.3 | 1029 | -- | -- |
| 133.58 | 0.539 | 13.7 | -- | -- | -- | -- | -- | 0.162 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 39.73 | temperature | 25 | 720 | > th | dose dependent | rect. | 17 | 17 |
| 3 | 39.92 | temperature | 25 | 1440 | > th | dose dependent | rect. | 9 | 14 |
| 9 | 39.94 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 22 |
| 10 | 39.95 | temperature | 25 | 1440 | > th | dose dependent | sin | 19 | NA |
| 14 | 39.96 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 10 |
| 111 | 40.09 | temperature | 25 | 1440 | > th | dose dependent | no | NA | NA |
| 112 | 40.09 | temperature | 25 | 1440 | > th | dose dependent | rect. | 15 | 8 |
| 138 | 40.11 | temperature | 25 | 1440 | > th | dose dependent | rect. | 17 | 23 |
| 139 | 40.11 | temperature | 25 | 1440 | > th | dose dependent | rect. | 21 | 23 |
| 183 | 40.18 | temperature | 25 | 1440 | > th | dose dependent | rect. | 17 | 1 |
| 234 | 40.27 | temperature | 25 | 1440 | > th | dose dependent | rect. | 17 | 3 |
| 281 | 40.40 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 1 |
| 295 | 40.45 | temperature | 25 | 720 | > th | dose dependent | sin | 11 | NA |
| 396 | 40.97 | temperature | 30 | 1440 | < th | dose independent | sin | 15 | NA |
| 406 | 41.00 | temperature | 30 | 1440 | < th | dose independent | rect. | 13 | 8 |
| 412 | 41.01 | temperature | 30 | 1440 | < th | dose independent | rect. | 13 | 6 |
| 415 | 41.01 | temperature | 30 | 1440 | < th | dose independent | rect. | 13 | 14 |
| 418 | 41.01 | temperature | 30 | 1440 | < th | dose independent | rect. | 13 | 18 |
| 426 | 41.04 | temperature | 30 | 1440 | < th | dose independent | rect. | 11 | 8 |
| 427 | 41.04 | temperature | 30 | 1440 | < th | dose independent | rect. | 11 | 10 |
| 431 | 41.04 | temperature | 30 | 1440 | < th | dose independent | rect. | 11 | 21 |
| 445 | 41.06 | temperature | 30 | 1440 | > th | dose independent | sin | 15 | NA |
| 478 | 41.12 | temperature | 30 | 1440 | > th | dose independent | rect. | 14 | 5 |
| 563 | 41.23 | temperature | 30 | 1440 | > th | dose independent | rect. | 11 | 8 |
| 588 | 41.24 | temperature | 30 | 1440 | < th | dose independent | rect. | 17 | 23 |
| 607 | 41.27 | temperature | 30 | 1440 | < th | dose independent | rect. | 13 | 23 |
| 654 | 41.35 | temperature | 30 | 1440 | < th | dose independent | no | NA | NA |
| 655 | 41.35 | temperature | 30 | 1440 | < th | dose independent | rect. | 7 | 12 |
| 714 | 41.35 | temperature | 30 | 1440 | < th | dose independent | rect. | 20 | 23 |
| 795 | 41.47 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 7 |
| 796 | 41.47 | temperature | 30 | 1440 | > th | dose independent | rect. | 17 | 23 |
| 806 | 41.49 | temperature | 30 | 1440 | < th | dose independent | rect. | 11 | 4 |
| 808 | 41.49 | temperature | 30 | 1440 | > th | dose independent | rect. | 13 | 23 |
| 821 | 41.51 | wind | 9 | 43200 | > th | dose dependent | rect. | 14 | 16 |
| 838 | 41.57 | temperature | 30 | 1440 | > th | dose independent | no | NA | NA |