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Os09g0327100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to GTP-binding protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 7.25 (0.0204) R2 : 0.708
β1 : -- (--) R2dD : -- R2D : --
β2 : 1.25 (0.0532) R2dC : 0.372 R2C : 0.381
β3 : -1.22 (0.0538) R2dE : 0.322 R2E : 0.324
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.116 (0.0429) R2dN8 : 0.00815 R2N8 : 0.0047
σ : 0.383
deviance : 67.48
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_____
C
peak time of C : 17.3
E
wheather : temperature
threshold : 0.2129
memory length : 208
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 6.21
open length of G : 5.37

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
54.49 0.347 7.24 0.708 1.3 -1.25 0.404 -0.187 -0.0545 17.4 8.194 209 6.28 5.26
54.55 0.344 7.24 0.7 1.3 -1.25 0.433 -- -0.0575 17.4 7.426 208 6.28 5.25
54.87 0.345 7.24 0.709 1.3 -1.23 -- -0.186 -0.0527 17.4 7.296 207 6.28 5.28
54.94 0.345 7.24 0.698 1.31 -1.23 -- -- -0.0603 17.4 6.39 207 6.33 5.26
75.77 0.405 7.19 0.89 -- -1.57 -- 0.64 0.135 -- 8.315 207 0.0167 11.2
79.38 0.418 7.26 0.664 1.61 -- 0.388 -- -0.0343 19.6 -- -- -- --
79.8 0.418 7.26 0.655 1.62 -- -- -- -0.0337 19.6 -- -- -- --
72.66 0.397 7.19 0.817 -- -1.66 -- -- 0.0756 -- 9.398 168 0.0106 11.6
67.48 0.383 7.25 -- 1.25 -1.22 -- -- -0.116 17.3 0.2129 208 6.21 5.37
219.6 0.692 7.22 0.631 -- -- -- -- -0.0586 -- -- -- -- --
91.1 0.446 7.27 -- 1.61 -- -- -- -0.107 19.6 -- -- -- --
89.04 0.439 7.2 -- -- -1.53 -- -- -0.0346 -- 6.474 158 0.0161 11.7
230.11 0.708 7.23 -- -- -- -- -- -0.129 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 55.23 temperature 10.0 270 > th dose dependent rect. 6 5
2 55.27 temperature 10.0 270 > th dose dependent rect. 7 3
3 55.57 temperature 10.0 270 > th dose dependent rect. 18 17
4 56.07 temperature 20.0 270 > th dose independent rect. 6 5
6 56.56 temperature 10.0 270 > th dose dependent rect. 8 1
7 56.57 temperature 20.0 270 > th dose independent rect. 7 3
9 56.82 humidity 60.0 270 > th dose independent rect. 6 5
13 57.01 wind 9.0 270 < th dose independent rect. 11 19
17 57.14 humidity 60.0 270 > th dose independent rect. 7 3
18 57.18 precipitation 0.1 270 < th dose independent rect. 11 19
19 57.18 precipitation 0.1 270 < th dose dependent rect. 11 19
24 57.33 precipitation 0.1 270 < th dose independent rect. 6 5
25 57.33 precipitation 0.1 270 < th dose dependent rect. 6 5
27 57.38 radiation 1.0 270 > th dose independent rect. 6 5
29 57.40 atmosphere 995.0 270 > th dose independent rect. 6 5
30 57.40 atmosphere 1015.0 270 < th dose independent rect. 6 5
31 57.40 temperature 10.0 270 > th dose independent rect. 11 19
33 57.43 temperature 20.0 270 > th dose independent rect. 8 1
36 57.47 wind 9.0 270 < th dose independent rect. 6 5
37 57.55 temperature 10.0 10 > th dose dependent rect. 8 4
38 57.57 wind 9.0 270 < th dose independent rect. 10 21
48 57.89 precipitation 0.1 270 < th dose independent rect. 10 21
49 57.89 precipitation 0.1 270 < th dose dependent rect. 10 21
55 57.99 wind 1.0 270 > th dose independent rect. 6 5
58 58.02 precipitation 0.1 270 < th dose independent rect. 7 3
59 58.02 precipitation 0.1 270 < th dose dependent rect. 7 3
62 58.07 wind 1.0 270 > th dose independent rect. 7 3
63 58.07 wind 9.0 270 < th dose independent rect. 7 3
65 58.08 atmosphere 995.0 270 > th dose independent rect. 7 3
66 58.08 atmosphere 1015.0 270 < th dose independent rect. 7 3
68 58.08 temperature 10.0 270 > th dose independent rect. 10 21
70 58.10 radiation 1.0 270 > th dose independent rect. 7 3
86 58.58 humidity 60.0 270 > th dose independent rect. 8 1
99 58.86 humidity 50.0 10 > th dose independent rect. 8 5
151 59.38 radiation 40.0 270 < th dose independent rect. 8 1
152 59.39 wind 1.0 10 > th dose independent rect. 8 4
153 59.41 wind 9.0 270 < th dose independent rect. 9 23
154 59.42 radiation 1.0 270 > th dose independent rect. 8 1
169 59.53 temperature 20.0 10 > th dose independent rect. 8 4
174 59.56 temperature 30.0 270 < th dose dependent rect. 23 7
176 59.58 wind 9.0 10 < th dose independent rect. 12 20
177 59.59 wind 7.0 270 < th dose independent rect. 8 1
179 59.60 precipitation 0.1 270 < th dose independent rect. 8 1
180 59.60 precipitation 0.1 270 < th dose dependent rect. 8 1
199 59.67 temperature 10.0 270 > th dose independent rect. 8 1
202 59.67 atmosphere 995.0 270 > th dose independent rect. 8 1
203 59.67 atmosphere 1015.0 270 < th dose independent rect. 8 1
204 59.67 temperature 10.0 270 > th dose independent rect. 9 23
205 59.68 radiation 40.0 270 < th dose independent rect. 7 3
214 59.75 precipitation 0.1 10 < th dose independent rect. 12 20
215 59.75 precipitation 0.1 10 < th dose dependent rect. 12 20
219 59.78 temperature 30.0 270 < th dose independent rect. 6 5
232 59.82 radiation 1.0 90 > th dose independent rect. 13 17
234 59.83 radiation 20.0 270 < th dose independent rect. 16 10
246 59.89 temperature 10.0 10 > th dose independent rect. 8 4
248 59.89 atmosphere 995.0 10 > th dose independent rect. 8 4
249 59.89 atmosphere 1015.0 10 < th dose independent rect. 8 4
250 59.89 precipitation 0.1 10 < th dose independent rect. 8 4
251 59.89 temperature 10.0 10 > th dose independent rect. 12 20
252 59.89 precipitation 0.1 10 < th dose dependent rect. 8 4
253 59.91 humidity 90.0 90 < th dose independent rect. 7 6
271 59.97 radiation 40.0 270 < th dose dependent rect. 16 10
272 59.97 temperature 15.0 10 > th dose dependent rect. 21 15
274 59.98 radiation 1.0 10 > th dose independent rect. 8 4
284 60.00 temperature 30.0 270 < th dose independent rect. 7 3
285 60.00 wind 9.0 270 < th dose independent rect. 2 14
298 60.07 wind 9.0 10 < th dose independent rect. 8 4
336 60.27 radiation 30.0 270 < th dose dependent rect. 22 9
339 60.29 precipitation 0.1 270 < th dose independent rect. 2 14
341 60.29 precipitation 0.1 270 < th dose dependent rect. 2 14
344 60.30 atmosphere 995.0 270 > th dose independent rect. 11 19
354 60.31 humidity 50.0 270 > th dose independent rect. 18 17
368 60.33 wind 9.0 270 < th dose independent rect. 11 7
370 60.34 temperature 10.0 270 > th dose independent rect. 16 10
371 60.34 radiation 40.0 270 < th dose independent rect. 16 10
372 60.34 temperature 10.0 270 > th dose independent rect. 2 14
373 60.34 atmosphere 1015.0 270 < th dose independent rect. 2 14
374 60.34 humidity 50.0 270 > th dose dependent rect. 7 3
392 60.43 humidity 90.0 10 < th dose independent rect. 8 4
406 60.47 radiation 40.0 270 < th dose independent rect. 6 5
415 60.51 temperature 10.0 1440 > th dose independent rect. 9 4
418 60.51 atmosphere 995.0 1440 > th dose independent rect. 9 4
423 60.51 temperature 10.0 1440 > th dose independent rect. 14 19
430 60.53 precipitation 0.1 270 < th dose independent rect. 11 7
431 60.53 radiation 40.0 10 < th dose independent rect. 14 18
432 60.53 precipitation 0.1 270 < th dose dependent rect. 11 7
438 60.60 temperature 15.0 270 > th dose independent rect. 7 15
448 60.65 atmosphere 1015.0 270 < th dose independent rect. 7 15
453 60.66 radiation 10.0 270 < th dose independent rect. 22 9
454 60.66 precipitation 0.1 270 < th dose independent rect. 22 9
456 60.66 precipitation 0.1 270 < th dose dependent rect. 22 9
469 60.74 wind 9.0 270 < th dose independent rect. 16 10
471 60.75 temperature 10.0 270 > th dose independent rect. 11 7
472 60.75 atmosphere 1015.0 270 < th dose independent rect. 11 7
473 60.75 temperature 10.0 270 > th dose independent rect. 18 17
485 60.80 wind 9.0 270 < th dose independent rect. 22 9
487 60.81 temperature 10.0 270 > th dose independent rect. 22 9
488 60.81 temperature 30.0 270 < th dose independent rect. 22 9
489 60.81 humidity 50.0 270 > th dose independent rect. 22 9
491 60.81 atmosphere 995.0 270 > th dose independent rect. 22 9
492 60.81 radiation 30.0 270 < th dose independent rect. 22 9
497 60.82 wind 9.0 270 < th dose independent rect. 18 17
501 60.84 atmosphere 995.0 270 > th dose independent rect. 18 17
502 60.84 humidity 50.0 270 > th dose dependent rect. 8 1
519 60.91 radiation 1.0 270 > th dose independent rect. 11 7
566 61.10 temperature 30.0 270 < th dose dependent rect. 1 5
574 61.14 temperature 10.0 270 > th dose dependent rect. 11 6
605 61.28 humidity 50.0 270 > th dose dependent rect. 6 5
616 61.33 precipitation 0.1 270 < th dose independent rect. 18 17
617 61.33 precipitation 0.1 270 < th dose dependent rect. 18 17
621 61.36 wind 1.0 270 > th dose independent rect. 11 7
642 61.43 wind 9.0 270 < th dose dependent rect. 7 3
697 61.61 atmosphere 995.0 270 > th dose independent rect. 16 10
712 61.66 atmosphere 1015.0 270 < th dose independent rect. 18 17
754 61.80 precipitation 0.1 270 < th dose independent rect. 7 15
757 61.80 precipitation 0.1 270 < th dose dependent rect. 7 15
766 61.88 wind 9.0 270 < th dose independent rect. 7 15
776 61.91 atmosphere 1015.0 10 < th dose dependent rect. 8 4
778 61.92 precipitation 0.1 270 < th dose independent rect. 16 10
781 61.92 precipitation 0.1 270 < th dose dependent rect. 16 10
789 61.98 radiation 1.0 270 < th dose dependent sin 6 NA
800 62.03 radiation 1.0 270 > th dose independent sin 6 NA
804 62.03 wind 9.0 270 < th dose dependent rect. 6 5
815 62.08 radiation 1.0 270 < th dose independent sin 6 NA
824 62.11 atmosphere 995.0 270 > th dose independent rect. 6 16
830 62.12 humidity 50.0 270 > th dose independent rect. 17 9
875 62.29 atmosphere 1015.0 270 < th dose dependent rect. 8 1
881 62.31 wind 1.0 270 > th dose independent rect. 7 15
900 62.38 wind 1.0 270 > th dose independent rect. 11 19
929 62.49 humidity 50.0 270 > th dose dependent rect. 22 8
938 62.53 atmosphere 995.0 10 > th dose independent rect. 13 19
939 62.54 humidity 50.0 270 > th dose independent rect. 12 18
957 62.60 radiation 1.0 90 < th dose dependent sin 15 NA
984 62.63 atmosphere 995.0 270 > th dose independent rect. 2 14
986 62.63 radiation 40.0 270 < th dose independent rect. 6 19