Os02g0653800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to GTP-binding protein.
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Os02g0653800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to GTP-binding protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 31.28 | 0.263 | 13 | 0.655 | 0.317 | -0.768 | -0.371 | -0.587 | 0.236 | 23.2 | 21.23 | 14 | -- | -- |
| 31.49 | 0.261 | 13 | 0.761 | 0.315 | -0.816 | -0.235 | -- | 0.269 | 23 | 21.35 | 18 | -- | -- |
| 31.68 | 0.262 | 13 | 0.731 | 0.328 | -0.774 | -- | -0.197 | 0.253 | 23.1 | 22.19 | 18 | -- | -- |
| 31.71 | 0.262 | 13 | 0.762 | 0.325 | -0.8 | -- | -- | 0.259 | 23 | 22.21 | 18 | -- | -- |
| 36.81 | 0.284 | 13 | 0.802 | -- | -1.02 | -- | -0.0593 | 0.298 | -- | 20.95 | 10 | -- | -- |
| 41.69 | 0.303 | 13 | 0.597 | 0.56 | -- | -0.0763 | -- | 0.13 | 0.796 | -- | -- | -- | -- |
| 41.72 | 0.302 | 13 | 0.6 | 0.56 | -- | -- | -- | 0.13 | 0.806 | -- | -- | -- | -- |
| 36.76 | 0.282 | 13 | 0.814 | -- | -1.01 | -- | -- | 0.302 | -- | 21 | 5 | -- | -- |
| 45.53 | 0.316 | 13 | -- | 0.382 | -0.589 | -- | -- | 0.124 | 23.7 | 24.03 | 18 | -- | -- |
| 61.32 | 0.366 | 13 | 0.621 | -- | -- | -- | -- | 0.141 | -- | -- | -- | -- | -- |
| 51.21 | 0.335 | 13 | -- | 0.57 | -- | -- | -- | 0.0635 | 0.853 | -- | -- | -- | -- |
| 52.97 | 0.34 | 13 | -- | -- | -0.85 | -- | -- | 0.153 | -- | 24.03 | 18 | -- | -- |
| 71.48 | 0.395 | 13 | -- | -- | -- | -- | -- | 0.0717 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 28.30 | temperature | 10 | 90 | > th | dose dependent | sin | 2 | NA |
| 24 | 29.04 | temperature | 30 | 90 | < th | dose dependent | sin | 2 | NA |
| 27 | 29.14 | temperature | 20 | 10 | > th | dose dependent | rect. | 7 | 22 |
| 35 | 29.35 | temperature | 30 | 270 | < th | dose dependent | rect. | 1 | 17 |
| 49 | 29.55 | temperature | 30 | 90 | < th | dose dependent | rect. | 5 | 14 |
| 63 | 29.79 | temperature | 30 | 270 | < th | dose dependent | rect. | 23 | 20 |
| 99 | 30.24 | temperature | 30 | 90 | < th | dose dependent | rect. | 24 | 23 |
| 131 | 30.55 | temperature | 20 | 10 | > th | dose dependent | rect. | 8 | 16 |
| 139 | 30.65 | temperature | 20 | 90 | > th | dose dependent | rect. | 17 | 23 |
| 159 | 30.78 | temperature | 20 | 10 | > th | dose dependent | rect. | 8 | 12 |
| 163 | 30.82 | temperature | 20 | 10 | > th | dose dependent | rect. | 8 | 14 |
| 190 | 31.04 | temperature | 25 | 270 | > th | dose dependent | sin | 8 | NA |
| 203 | 31.07 | temperature | 20 | 270 | > th | dose dependent | rect. | 17 | 21 |
| 217 | 31.18 | temperature | 20 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 223 | 31.21 | temperature | 20 | 30 | > th | dose dependent | rect. | 1 | 23 |
| 247 | 31.32 | temperature | 20 | 30 | > th | dose dependent | rect. | 21 | 23 |
| 280 | 31.47 | temperature | 20 | 10 | > th | dose dependent | no | NA | NA |
| 293 | 31.52 | temperature | 20 | 10 | > th | dose dependent | rect. | 3 | 23 |
| 347 | 31.73 | temperature | 25 | 10 | > th | dose dependent | rect. | 19 | 21 |
| 355 | 31.75 | temperature | 30 | 10 | < th | dose dependent | rect. | 24 | 23 |
| 356 | 31.76 | temperature | 20 | 90 | > th | dose dependent | rect. | 7 | 9 |
| 377 | 31.82 | temperature | 20 | 10 | > th | dose dependent | rect. | 23 | 21 |
| 382 | 31.84 | temperature | 20 | 30 | > th | dose dependent | rect. | 3 | 21 |
| 396 | 31.88 | temperature | 25 | 270 | < th | dose independent | rect. | 1 | 18 |
| 408 | 31.90 | temperature | 20 | 10 | > th | dose dependent | rect. | 19 | 23 |
| 448 | 32.04 | temperature | 20 | 270 | > th | dose dependent | rect. | 23 | 12 |
| 476 | 32.10 | temperature | 30 | 30 | < th | dose dependent | rect. | 9 | 23 |
| 483 | 32.12 | temperature | 20 | 10 | > th | dose dependent | rect. | 7 | 9 |
| 484 | 32.12 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 12 |
| 519 | 32.22 | temperature | 30 | 90 | < th | dose dependent | no | NA | NA |
| 521 | 32.22 | temperature | 20 | 720 | > th | dose dependent | rect. | 1 | 10 |
| 551 | 32.29 | temperature | 20 | 10 | > th | dose dependent | rect. | 3 | 13 |
| 576 | 32.34 | temperature | 25 | 270 | > th | dose independent | sin | 4 | NA |
| 610 | 32.38 | temperature | 20 | 10 | > th | dose dependent | rect. | 15 | 23 |
| 620 | 32.40 | temperature | 30 | 30 | < th | dose dependent | rect. | 11 | 23 |
| 627 | 32.41 | temperature | 30 | 90 | < th | dose dependent | rect. | 19 | 23 |
| 637 | 32.42 | temperature | 30 | 90 | < th | dose dependent | rect. | 13 | 23 |
| 640 | 32.43 | temperature | 25 | 10 | > th | dose dependent | rect. | 21 | 19 |
| 648 | 32.44 | temperature | 20 | 10 | > th | dose dependent | rect. | 1 | 15 |
| 676 | 32.48 | temperature | 25 | 270 | < th | dose independent | sin | 4 | NA |
| 678 | 32.48 | temperature | 30 | 90 | < th | dose dependent | rect. | 15 | 23 |
| 691 | 32.50 | temperature | 25 | 10 | > th | dose dependent | rect. | 23 | 17 |
| 776 | 32.59 | temperature | 20 | 30 | > th | dose dependent | rect. | 13 | 23 |
| 803 | 32.62 | temperature | 25 | 270 | > th | dose dependent | rect. | 19 | 16 |
| 860 | 32.68 | temperature | 20 | 10 | > th | dose dependent | rect. | 1 | 19 |
| 888 | 32.70 | temperature | 30 | 30 | < th | dose dependent | rect. | 17 | 23 |
| 920 | 32.73 | temperature | 20 | 10 | > th | dose dependent | rect. | 3 | 17 |
| 933 | 32.74 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 23 |
| 936 | 32.75 | temperature | 30 | 720 | < th | dose dependent | rect. | 3 | 8 |