Os10g0377400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Ras-related protein Rab11D.
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Os10g0377400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Ras-related protein Rab11D.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 25.1 | 0.235 | 12.4 | 1.13 | 0.492 | 0.572 | 0.457 | 0.47 | 0.352 | 18.9 | 19.16 | 2723 | -- | -- |
| 25.4 | 0.235 | 12.4 | 1.08 | 0.493 | 0.453 | 0.434 | -- | 0.337 | 18.9 | 19.41 | 2721 | -- | -- |
| 25.63 | 0.236 | 12.4 | 1.11 | 0.493 | 0.576 | -- | 0.43 | 0.349 | 18.8 | 19.15 | 2743 | -- | -- |
| 25.86 | 0.237 | 12.4 | 1.06 | 0.493 | 0.456 | -- | -- | 0.34 | 18.8 | 19.4 | 2687 | -- | -- |
| 37.86 | 0.287 | 12.4 | 1.12 | -- | 0.515 | -- | 0.333 | 0.345 | -- | 19.49 | 2144 | -- | -- |
| 28.94 | 0.252 | 12.4 | 1.3 | 0.48 | -- | 0.475 | -- | 0.437 | 19 | -- | -- | -- | -- |
| 29.53 | 0.254 | 12.4 | 1.29 | 0.482 | -- | -- | -- | 0.439 | 18.9 | -- | -- | -- | -- |
| 38.05 | 0.287 | 12.4 | 1.07 | -- | 0.457 | -- | -- | 0.335 | -- | 19.4 | 2200 | -- | -- |
| 31.53 | 0.262 | 12.5 | -- | 0.49 | 1.03 | -- | -- | 0.0611 | 18.9 | 18.5 | 47520 | -- | -- |
| 41.72 | 0.302 | 12.4 | 1.28 | -- | -- | -- | -- | 0.43 | -- | -- | -- | -- | -- |
| 73.7 | 0.402 | 12.5 | -- | 0.468 | -- | -- | -- | 0.295 | 19.1 | -- | -- | -- | -- |
| 43.65 | 0.308 | 12.5 | -- | -- | 1.03 | -- | -- | 0.0442 | -- | 18.4 | 47520 | -- | -- |
| 85.25 | 0.431 | 12.4 | -- | -- | -- | -- | -- | 0.287 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 25.30 | temperature | 20 | 4320 | < th | dose dependent | rect. | 21 | 3 |
| 2 | 25.32 | temperature | 20 | 4320 | < th | dose dependent | rect. | 22 | 1 |
| 8 | 25.43 | temperature | 20 | 4320 | < th | dose independent | rect. | 18 | 1 |
| 13 | 25.46 | humidity | 60 | 43200 | < th | dose dependent | rect. | 7 | 2 |
| 32 | 25.59 | temperature | 20 | 4320 | > th | dose independent | rect. | 18 | 5 |
| 33 | 25.59 | temperature | 20 | 4320 | < th | dose independent | rect. | 17 | 7 |
| 36 | 25.61 | temperature | 20 | 4320 | < th | dose independent | rect. | 18 | 5 |
| 46 | 25.64 | temperature | 20 | 4320 | < th | dose independent | rect. | 21 | 2 |
| 48 | 25.65 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 52 | 25.67 | temperature | 20 | 4320 | < th | dose dependent | sin | 18 | NA |
| 70 | 25.71 | temperature | 20 | 4320 | > th | dose independent | rect. | 21 | 2 |
| 87 | 25.73 | humidity | 60 | 43200 | < th | dose dependent | rect. | 21 | 12 |
| 98 | 25.76 | temperature | 20 | 4320 | > th | dose independent | rect. | 18 | 2 |
| 102 | 25.76 | humidity | 50 | 43200 | > th | dose independent | rect. | 20 | 14 |
| 125 | 25.79 | humidity | 50 | 43200 | > th | dose independent | rect. | 4 | 6 |
| 133 | 25.80 | humidity | 50 | 43200 | > th | dose independent | rect. | 6 | 4 |
| 144 | 25.81 | humidity | 50 | 43200 | > th | dose independent | rect. | 2 | 8 |
| 159 | 25.83 | temperature | 20 | 4320 | > th | dose independent | sin | 17 | NA |
| 174 | 25.84 | wind | 1 | 43200 | > th | dose independent | rect. | 23 | 2 |
| 184 | 25.84 | radiation | 20 | 4320 | < th | dose independent | rect. | 17 | 14 |
| 187 | 25.85 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 2 |
| 197 | 25.86 | temperature | 20 | 4320 | < th | dose independent | sin | 17 | NA |
| 209 | 25.87 | wind | 1 | 43200 | < th | dose independent | rect. | 24 | 1 |
| 211 | 25.87 | radiation | 20 | 4320 | < th | dose independent | rect. | 2 | 5 |
| 224 | 25.88 | temperature | 20 | 4320 | < th | dose dependent | rect. | 3 | 1 |
| 245 | 25.90 | radiation | 20 | 4320 | < th | dose independent | rect. | 4 | 3 |
| 297 | 25.94 | humidity | 50 | 43200 | < th | dose independent | rect. | 20 | 14 |
| 303 | 25.94 | temperature | 20 | 4320 | < th | dose dependent | rect. | 18 | 1 |
| 317 | 25.95 | radiation | 10 | 4320 | > th | dose dependent | rect. | 16 | 15 |
| 319 | 25.96 | humidity | 50 | 43200 | < th | dose independent | rect. | 6 | 4 |
| 339 | 25.97 | humidity | 50 | 43200 | < th | dose independent | rect. | 8 | 1 |
| 376 | 25.99 | humidity | 50 | 43200 | < th | dose independent | sin | 9 | NA |
| 379 | 25.99 | wind | 1 | 43200 | > th | dose independent | rect. | 19 | 7 |
| 384 | 25.99 | radiation | 20 | 4320 | < th | dose independent | rect. | 20 | 11 |
| 394 | 26.00 | wind | 1 | 43200 | > th | dose independent | rect. | 21 | 5 |
| 396 | 26.00 | wind | 1 | 43200 | < th | dose independent | rect. | 19 | 7 |
| 419 | 26.01 | humidity | 50 | 43200 | > th | dose independent | sin | 9 | NA |
| 423 | 26.01 | radiation | 20 | 4320 | < th | dose independent | rect. | 23 | 8 |
| 424 | 26.01 | wind | 1 | 43200 | < th | dose independent | rect. | 17 | 9 |
| 467 | 26.03 | wind | 1 | 43200 | < th | dose independent | rect. | 21 | 5 |
| 500 | 26.04 | humidity | 50 | 43200 | < th | dose dependent | sin | 9 | NA |
| 593 | 26.07 | temperature | 20 | 4320 | < th | dose dependent | rect. | 2 | 22 |
| 619 | 26.08 | radiation | 10 | 4320 | > th | dose dependent | rect. | 6 | 1 |
| 651 | 26.09 | temperature | 20 | 4320 | < th | dose dependent | no | NA | NA |
| 661 | 26.10 | humidity | 80 | 43200 | < th | dose independent | rect. | 6 | 1 |
| 672 | 26.10 | radiation | 40 | 4320 | < th | dose independent | rect. | 15 | 17 |
| 686 | 26.10 | wind | 1 | 43200 | < th | dose dependent | rect. | 15 | 11 |
| 721 | 26.11 | humidity | 50 | 43200 | < th | dose dependent | rect. | 13 | 21 |
| 750 | 26.12 | humidity | 50 | 43200 | > th | dose independent | rect. | 20 | 20 |
| 759 | 26.12 | humidity | 50 | 43200 | < th | dose dependent | rect. | 20 | 22 |
| 779 | 26.13 | humidity | 50 | 43200 | < th | dose dependent | rect. | 6 | 11 |
| 813 | 26.14 | humidity | 50 | 43200 | > th | dose independent | rect. | 14 | 1 |
| 823 | 26.14 | humidity | 50 | 43200 | > th | dose independent | rect. | 5 | 11 |
| 832 | 26.14 | temperature | 20 | 4320 | > th | dose independent | rect. | 6 | 18 |
| 844 | 26.14 | wind | 3 | 43200 | < th | dose dependent | rect. | 19 | 2 |
| 878 | 26.14 | temperature | 15 | 10 | > th | dose dependent | rect. | 12 | 23 |
| 893 | 26.15 | humidity | 50 | 43200 | > th | dose independent | rect. | 7 | 9 |
| 904 | 26.15 | humidity | 50 | 43200 | < th | dose independent | rect. | 20 | 20 |
| 908 | 26.15 | humidity | 50 | 43200 | < th | dose dependent | sin | 0 | NA |
| 910 | 26.15 | humidity | 50 | 43200 | < th | dose dependent | no | NA | NA |
| 915 | 26.15 | humidity | 50 | 43200 | < th | dose dependent | rect. | 5 | 8 |