Os07g0496000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Nt-rab6 protein.
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Os07g0496000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Nt-rab6 protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 25.99 | 0.24 | 13.2 | 0.732 | 0.45 | -0.628 | -0.24 | 0.199 | 0.35 | 1.19 | 23.09 | 19 | -- | -- |
| 26.02 | 0.238 | 13.2 | 0.706 | 0.447 | -0.626 | -0.269 | -- | 0.347 | 1.2 | 23.09 | 19 | -- | -- |
| 26.17 | 0.238 | 13.2 | 0.77 | 0.451 | -0.636 | -- | 0.434 | 0.358 | 1.15 | 23.1 | 15 | -- | -- |
| 26.32 | 0.239 | 13.2 | 0.709 | 0.457 | -0.599 | -- | -- | 0.341 | 1.16 | 23.02 | 18 | -- | -- |
| 34.5 | 0.275 | 13.2 | 0.915 | -- | -1.08 | -- | 0.882 | 0.438 | -- | 23.15 | 7 | -- | -- |
| 31.85 | 0.265 | 13.2 | 0.589 | 0.679 | -- | -0.153 | -- | 0.25 | 1.74 | -- | -- | -- | -- |
| 31.95 | 0.265 | 13.2 | 0.594 | 0.679 | -- | -- | -- | 0.251 | 1.73 | -- | -- | -- | -- |
| 35.02 | 0.277 | 13.2 | 0.789 | -- | -1.02 | -- | -- | 0.401 | -- | 23.1 | 8 | -- | -- |
| 38.59 | 0.291 | 13.2 | -- | 0.536 | -0.402 | -- | -- | 0.227 | 1.45 | 24 | 18 | -- | -- |
| 59.94 | 0.362 | 13.2 | 0.622 | -- | -- | -- | -- | 0.266 | -- | -- | -- | -- | -- |
| 41.25 | 0.3 | 13.2 | -- | 0.689 | -- | -- | -- | 0.185 | 1.76 | -- | -- | -- | -- |
| 50.55 | 0.332 | 13.2 | -- | -- | -0.891 | -- | -- | 0.278 | -- | 24.1 | 2 | -- | -- |
| 70.14 | 0.391 | 13.2 | -- | -- | -- | -- | -- | 0.197 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 25.34 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 11 | 7 |
| 8 | 25.61 | radiation | 1.0 | 1440 | < th | dose dependent | sin | 21 | NA |
| 9 | 25.61 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 9 | 15 |
| 10 | 25.62 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 9 | 13 |
| 33 | 25.65 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 11 | 11 |
| 79 | 25.85 | temperature | 20.0 | 90 | > th | dose dependent | sin | 1 | NA |
| 97 | 26.05 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 5 | 16 |
| 122 | 26.15 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 5 | 14 |
| 129 | 26.19 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 24 | 20 |
| 135 | 26.25 | temperature | 20.0 | 90 | > th | dose dependent | rect. | 24 | 19 |
| 142 | 26.30 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 11 | 3 |
| 144 | 26.30 | temperature | 20.0 | 90 | > th | dose dependent | rect. | 3 | 16 |
| 145 | 26.30 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 3 | 16 |
| 150 | 26.32 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 13 | 6 |
| 165 | 26.36 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 11 | 13 |
| 167 | 26.36 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 17 | 1 |
| 168 | 26.36 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 13 | 2 |
| 175 | 26.37 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 11 | 11 |
| 181 | 26.37 | temperature | 25.0 | 10 | > th | dose dependent | rect. | 7 | 23 |
| 182 | 26.38 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 11 | 8 |
| 241 | 26.44 | temperature | 30.0 | 30 | < th | dose dependent | sin | 0 | NA |
| 243 | 26.45 | radiation | 1.0 | 1440 | < th | dose independent | sin | 21 | NA |
| 244 | 26.45 | temperature | 25.0 | 1440 | > th | dose independent | rect. | 19 | 1 |
| 253 | 26.45 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 23 | 12 |
| 255 | 26.45 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 13 | 15 |
| 258 | 26.45 | temperature | 25.0 | 30 | > th | dose dependent | rect. | 21 | 23 |
| 273 | 26.46 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 13 | 13 |
| 295 | 26.47 | temperature | 25.0 | 10 | > th | dose dependent | rect. | 7 | 13 |
| 301 | 26.48 | temperature | 25.0 | 1440 | < th | dose independent | rect. | 19 | 1 |
| 319 | 26.48 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 19 | 23 |
| 332 | 26.49 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 21 | 21 |
| 342 | 26.50 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 23 | 19 |
| 353 | 26.51 | temperature | 25.0 | 1440 | > th | dose dependent | sin | 18 | NA |
| 365 | 26.52 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 12 | 1 |
| 369 | 26.52 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 12 | 1 |
| 386 | 26.53 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 11 | 8 |
| 400 | 26.53 | temperature | 10.0 | 1440 | > th | dose dependent | rect. | 17 | 2 |
| 413 | 26.54 | temperature | 30.0 | 1440 | < th | dose dependent | rect. | 18 | 1 |
| 418 | 26.54 | temperature | 25.0 | 10 | > th | dose dependent | rect. | 7 | 15 |
| 486 | 26.57 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 20 | 15 |
| 528 | 26.59 | temperature | 25.0 | 30 | > th | dose dependent | rect. | 23 | 23 |
| 560 | 26.61 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 24 | 19 |
| 566 | 26.62 | radiation | 1.0 | 1440 | > th | dose independent | sin | 21 | NA |
| 690 | 26.67 | temperature | 25.0 | 10 | > th | dose dependent | no | NA | NA |
| 705 | 26.67 | temperature | 25.0 | 10 | > th | dose dependent | rect. | 3 | 23 |
| 721 | 26.68 | temperature | 25.0 | 1440 | > th | dose dependent | no | NA | NA |
| 826 | 26.71 | temperature | 25.0 | 10 | > th | dose dependent | rect. | 13 | 23 |
| 827 | 26.71 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 17 | 23 |
| 856 | 26.72 | temperature | 25.0 | 90 | > th | dose dependent | rect. | 15 | 23 |
| 940 | 26.75 | precipitation | 0.1 | 1440 | > th | dose dependent | rect. | 12 | 6 |
| 986 | 26.76 | radiation | 1.0 | 1440 | < th | dose dependent | no | NA | NA |
| 988 | 26.76 | temperature | 10.0 | 1440 | > th | dose dependent | rect. | 13 | 7 |