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Os07g0239400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Ethylene-responsive small GTP-binding protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 7.61 (0.0257) R2 : 0.212
β1 : -1.02 (0.094) R2dD : 0.21 R2D : 0.169
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.235 (0.0548) R2dN8 : 0.0426 R2N8 : 0.0013
σ : 0.482
deviance : 106.24
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
80.12 0.421 7.6 -1.03 0.62 0.528 -0.616 -0.489 -0.258 8.44 19.42 12 -- --
80.99 0.419 7.59 -1.02 0.619 0.53 -0.268 -- -0.254 8.46 19.45 13 -- --
80.97 0.419 7.6 -1.03 0.62 0.528 -- -0.219 -0.258 8.44 19.43 12 -- --
81.2 0.42 7.59 -1.02 0.623 0.547 -- -- -0.251 8.64 19.42 13 -- --
97.02 0.459 7.6 -1.13 -- 0.558 -- -0.465 -0.215 -- 39.39 49 -- --
90.75 0.447 7.6 -1.03 0.528 -- -0.707 -- -0.251 5.6 -- -- -- --
91.98 0.449 7.6 -1.03 0.524 -- -- -- -0.248 5.66 -- -- -- --
96.91 0.459 7.62 -1.1 -- 0.635 -- -- -0.237 -- 39.49 49 -- --
107.81 0.484 7.56 -- 0.648 0.558 -- -- -0.134 8.74 17.7 13 -- --
106.24 0.482 7.61 -1.02 -- -- -- -- -0.235 -- -- -- -- --
120.17 0.513 7.57 -- 0.508 -- -- -- -0.132 5.75 -- -- -- --
112.22 0.493 7.55 -- -- 0.702 -- -- -0.0566 -- 10.25 849 -- --
133.55 0.539 7.58 -- -- -- -- -- -0.122 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 68.26 wind 9.0 270 < th dose independent rect. 7 19
2 68.59 wind 9.0 270 < th dose independent rect. 6 21
5 69.26 precipitation 0.1 270 < th dose independent rect. 7 19
6 69.26 precipitation 0.1 270 < th dose dependent rect. 7 19
7 69.34 radiation 20.0 270 < th dose independent rect. 2 5
9 69.46 humidity 70.0 270 > th dose independent rect. 2 5
11 69.51 radiation 40.0 270 < th dose dependent rect. 2 5
12 69.52 wind 9.0 270 < th dose independent rect. 2 5
13 69.52 temperature 10.0 270 > th dose independent rect. 2 5
15 69.52 temperature 30.0 270 < th dose independent rect. 2 5
16 69.52 humidity 50.0 270 > th dose independent rect. 2 5
18 69.52 atmosphere 995.0 270 > th dose independent rect. 2 5
19 69.52 atmosphere 1015.0 270 < th dose independent rect. 2 5
21 69.52 temperature 10.0 270 > th dose independent rect. 7 19
27 69.78 precipitation 0.1 270 < th dose independent rect. 6 21
28 69.78 precipitation 0.1 270 < th dose dependent rect. 6 21
32 69.85 wind 1.0 270 > th dose independent rect. 7 19
33 69.86 precipitation 0.1 270 < th dose independent rect. 2 5
34 69.86 precipitation 0.1 270 < th dose dependent rect. 2 5
35 69.93 atmosphere 1010.0 270 < th dose independent rect. 3 3
36 69.93 radiation 40.0 270 < th dose independent rect. 11 20
41 70.03 atmosphere 995.0 270 > th dose independent rect. 7 19
45 70.11 wind 9.0 270 < th dose independent rect. 3 3
46 70.11 temperature 10.0 270 > th dose independent rect. 3 3
48 70.11 temperature 30.0 270 < th dose independent rect. 3 3
49 70.11 humidity 50.0 270 > th dose independent rect. 3 3
52 70.11 atmosphere 995.0 270 > th dose independent rect. 3 3
57 70.11 temperature 10.0 270 > th dose independent rect. 6 21
72 70.51 precipitation 0.1 270 < th dose independent rect. 3 3
73 70.51 precipitation 0.1 270 < th dose dependent rect. 3 3
74 70.53 humidity 50.0 270 > th dose independent rect. 13 18
76 70.55 temperature 10.0 270 > th dose dependent rect. 2 5
77 70.56 wind 9.0 270 < th dose independent rect. 7 5
90 70.62 humidity 50.0 270 > th dose dependent rect. 2 5
91 70.70 wind 9.0 270 < th dose dependent rect. 7 19
97 70.75 precipitation 0.1 270 < th dose independent rect. 7 5
99 70.75 precipitation 0.1 270 < th dose dependent rect. 7 5
100 70.78 temperature 10.0 270 > th dose independent rect. 7 5
101 70.78 atmosphere 995.0 270 > th dose independent rect. 7 5
102 70.78 atmosphere 1015.0 270 < th dose independent rect. 7 5
103 70.78 temperature 10.0 270 > th dose independent rect. 12 19
107 70.87 temperature 10.0 270 > th dose dependent rect. 3 3
113 70.95 atmosphere 995.0 270 > th dose independent rect. 6 21
115 70.98 humidity 50.0 270 > th dose dependent rect. 3 3
117 71.01 humidity 50.0 270 > th dose independent rect. 7 5
129 71.05 wind 1.0 270 > th dose independent rect. 2 5
131 71.06 radiation 1.0 270 > th dose independent rect. 7 5
165 71.51 wind 7.0 270 < th dose independent rect. 17 10
177 71.66 precipitation 0.1 270 < th dose independent rect. 12 19
178 71.66 precipitation 0.1 270 < th dose dependent rect. 12 19
181 71.72 wind 7.0 10 < th dose independent rect. 9 20
202 71.80 wind 1.0 270 > th dose independent rect. 7 5
203 71.80 radiation 30.0 90 < th dose dependent rect. 5 4
205 71.84 wind 1.0 270 > th dose independent rect. 3 3
211 71.88 wind 1.0 90 > th dose independent rect. 9 18
221 72.03 atmosphere 995.0 270 > th dose independent rect. 12 19
224 72.06 wind 9.0 270 < th dose independent rect. 12 19
233 72.11 wind 9.0 270 < th dose dependent rect. 7 5
244 72.19 atmosphere 1015.0 270 < th dose independent rect. 7 19
245 72.19 radiation 40.0 10 < th dose dependent rect. 5 4
259 72.28 radiation 10.0 270 < th dose dependent rect. 2 12
264 72.31 radiation 10.0 270 < th dose dependent rect. 2 16
275 72.39 atmosphere 995.0 270 > th dose dependent rect. 3 3
292 72.54 radiation 20.0 10 < th dose independent rect. 5 4
305 72.61 atmosphere 995.0 10 > th dose independent rect. 9 20
319 72.65 radiation 40.0 10 < th dose independent rect. 5 15
335 72.70 radiation 10.0 270 < th dose independent rect. 2 15
341 72.72 temperature 30.0 270 < th dose independent rect. 7 5
348 72.75 humidity 50.0 270 > th dose independent rect. 2 16
363 72.85 wind 9.0 270 < th dose dependent rect. 3 3
364 72.85 atmosphere 995.0 270 > th dose dependent rect. 2 5
365 72.86 radiation 40.0 270 < th dose dependent rect. 12 19
373 72.90 radiation 40.0 10 < th dose independent rect. 5 4
383 72.92 wind 9.0 270 < th dose dependent rect. 2 5
389 72.94 radiation 1.0 10 > th dose independent rect. 9 5
404 72.99 wind 7.0 10 < th dose independent rect. 5 4
406 72.99 temperature 10.0 10 > th dose independent rect. 5 4
408 72.99 temperature 30.0 10 < th dose independent rect. 5 4
409 72.99 humidity 50.0 10 > th dose independent rect. 5 4
411 72.99 atmosphere 995.0 10 > th dose independent rect. 5 4
412 72.99 atmosphere 1015.0 10 < th dose independent rect. 5 4
414 72.99 temperature 10.0 10 > th dose independent rect. 9 20
415 72.99 precipitation 0.1 10 < th dose independent rect. 9 20
417 72.99 precipitation 0.1 10 < th dose dependent rect. 9 20
425 73.03 radiation 40.0 10 < th dose dependent rect. 5 15
437 73.11 precipitation 0.1 10 < th dose independent rect. 5 4
440 73.11 precipitation 0.1 10 < th dose dependent rect. 5 4
442 73.12 precipitation 0.1 270 < th dose independent rect. 17 10
443 73.12 wind 9.0 270 < th dose independent rect. 21 15
445 73.12 humidity 50.0 30 > th dose dependent rect. 5 4
446 73.12 precipitation 0.1 270 < th dose dependent rect. 17 10
479 73.21 wind 1.0 10 > th dose independent rect. 9 5
503 73.24 radiation 20.0 90 < th dose dependent rect. 5 13
521 73.26 radiation 40.0 270 < th dose dependent rect. 2 15
540 73.30 radiation 1.0 270 < th dose independent rect. 3 11
541 73.30 precipitation 0.1 270 < th dose independent rect. 21 15
542 73.30 precipitation 0.1 270 < th dose dependent rect. 21 15
558 73.33 wind 9.0 270 < th dose dependent rect. 17 9
573 73.36 precipitation 0.1 90 < th dose independent rect. 5 2
575 73.36 precipitation 0.1 90 < th dose dependent rect. 5 2
577 73.37 wind 9.0 10 < th dose independent rect. 9 5
595 73.43 temperature 10.0 270 > th dose independent rect. 18 9
596 73.43 humidity 50.0 270 > th dose independent rect. 18 9
597 73.43 radiation 10.0 270 < th dose independent rect. 18 9
601 73.43 temperature 10.0 270 > th dose independent rect. 3 15
602 73.43 atmosphere 1015.0 270 < th dose independent rect. 3 15
605 73.44 atmosphere 995.0 270 > th dose independent rect. 18 9
609 73.45 humidity 50.0 90 > th dose dependent rect. 5 2
614 73.46 radiation 40.0 270 < th dose dependent rect. 18 9
624 73.50 temperature 10.0 270 > th dose independent rect. 12 9
625 73.50 temperature 10.0 270 > th dose independent rect. 21 15
626 73.50 atmosphere 995.0 270 > th dose independent rect. 21 15
657 73.57 temperature 10.0 10 > th dose independent rect. 9 5
659 73.57 atmosphere 995.0 10 > th dose independent rect. 9 5
660 73.57 atmosphere 1015.0 10 < th dose independent rect. 9 5
661 73.57 precipitation 0.1 10 < th dose independent rect. 9 5
663 73.57 temperature 10.0 10 > th dose independent rect. 14 19
664 73.57 precipitation 0.1 10 < th dose dependent rect. 9 5
701 73.64 radiation 20.0 10 < th dose independent rect. 5 15
724 73.69 atmosphere 1015.0 270 < th dose independent rect. 12 19
727 73.69 radiation 40.0 10 < th dose dependent rect. 5 13
736 73.73 humidity 50.0 270 > th dose independent rect. 12 8
740 73.73 atmosphere 1015.0 270 < th dose dependent rect. 12 19
764 73.79 radiation 10.0 90 < th dose independent rect. 5 13
796 73.88 wind 9.0 90 < th dose dependent rect. 5 2
800 73.89 temperature 10.0 10 > th dose dependent rect. 5 4
802 73.90 humidity 50.0 270 > th dose independent rect. 21 15
804 73.90 atmosphere 1015.0 270 < th dose dependent rect. 12 8
834 73.96 wind 9.0 10 < th dose dependent rect. 5 4
861 73.98 radiation 1.0 10 < th dose dependent sin 11 NA
864 73.98 atmosphere 995.0 10 > th dose dependent rect. 5 4
868 73.99 atmosphere 1015.0 270 < th dose independent rect. 12 9
876 74.00 wind 1.0 270 > th dose independent rect. 18 8
897 74.06 precipitation 0.1 10 < th dose independent rect. 14 19
902 74.06 precipitation 0.1 10 < th dose dependent rect. 14 19
944 74.16 temperature 10.0 1440 > th dose independent rect. 10 5
950 74.16 temperature 10.0 1440 > th dose independent rect. 15 19
961 74.17 wind 1.0 270 > th dose independent rect. 12 19