Os01g0179700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to GTP-binding protein YPTM2.
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Os01g0179700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to GTP-binding protein YPTM2.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 20.9 | 0.215 | 12.1 | 0.132 | 0.279 | 0.128 | -0.167 | 0.478 | 0.108 | 1.36 | 24.8 | 258 | -- | -- |
| 21.57 | 0.216 | 12.1 | 0.273 | 0.263 | 0.15 | -0.0421 | -- | 0.158 | 1.1 | 24.8 | 201 | -- | -- |
| 21 | 0.213 | 12.1 | 0.155 | 0.278 | 0.13 | -- | 0.423 | 0.114 | 1.3 | 24.77 | 258 | -- | -- |
| 21.55 | 0.216 | 12.1 | 0.279 | 0.269 | 0.149 | -- | -- | 0.16 | 1.36 | 24.7 | 201 | -- | -- |
| 24.72 | 0.232 | 12.1 | 0.232 | -- | 0.233 | -- | 0.284 | 0.187 | -- | 24.8 | 152 | -- | -- |
| 22.83 | 0.224 | 12.1 | 0.236 | 0.341 | -- | -0.000784 | -- | 0.0833 | 2.09 | -- | -- | -- | -- |
| 22.83 | 0.224 | 12.1 | 0.236 | 0.341 | -- | -- | -- | 0.0833 | 2.09 | -- | -- | -- | -- |
| 24.72 | 0.232 | 12.1 | 0.332 | -- | 0.252 | -- | -- | 0.23 | -- | 24.76 | 96 | -- | -- |
| 23.59 | 0.226 | 12.1 | -- | 0.293 | 0.112 | -- | -- | 0.112 | 1.58 | 24.8 | 208 | -- | -- |
| 29.81 | 0.255 | 12.1 | 0.25 | -- | -- | -- | -- | 0.0914 | -- | -- | -- | -- | -- |
| 24.3 | 0.231 | 12.1 | -- | 0.346 | -- | -- | -- | 0.057 | 2.11 | -- | -- | -- | -- |
| 27.27 | 0.243 | 12.1 | -- | -- | 0.225 | -- | -- | 0.176 | -- | 24.9 | 76 | -- | -- |
| 31.46 | 0.262 | 12.1 | -- | -- | -- | -- | -- | 0.0637 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 19.16 | temperature | 25.0 | 270 | < th | dose independent | rect. | 24 | 10 |
| 2 | 19.16 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 6 | 6 |
| 3 | 19.18 | temperature | 25.0 | 270 | < th | dose independent | rect. | 24 | 13 |
| 16 | 19.30 | temperature | 25.0 | 270 | < th | dose independent | rect. | 24 | 18 |
| 17 | 19.30 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 8 | 6 |
| 22 | 19.31 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 8 | 8 |
| 35 | 19.43 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 3 | 14 |
| 41 | 19.47 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 1 | 16 |
| 51 | 19.54 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 1 | 12 |
| 56 | 19.56 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 1 | 14 |
| 57 | 19.57 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 3 | 12 |
| 66 | 19.60 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 3 | 10 |
| 71 | 19.62 | temperature | 25.0 | 270 | > th | dose independent | rect. | 23 | 13 |
| 79 | 19.65 | temperature | 30.0 | 90 | < th | dose dependent | sin | 3 | NA |
| 80 | 19.66 | temperature | 25.0 | 10 | > th | dose independent | rect. | 8 | 6 |
| 84 | 19.66 | temperature | 25.0 | 90 | < th | dose independent | rect. | 3 | 14 |
| 92 | 19.68 | temperature | 25.0 | 270 | < th | dose independent | sin | 6 | NA |
| 93 | 19.68 | temperature | 25.0 | 10 | > th | dose independent | rect. | 8 | 8 |
| 111 | 19.70 | temperature | 25.0 | 90 | < th | dose independent | sin | 4 | NA |
| 113 | 19.70 | temperature | 25.0 | 90 | < th | dose independent | rect. | 3 | 12 |
| 120 | 19.70 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 21 | 14 |
| 121 | 19.71 | temperature | 20.0 | 270 | > th | dose independent | rect. | 6 | 7 |
| 124 | 19.71 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 8 | 4 |
| 132 | 19.73 | temperature | 25.0 | 270 | > th | dose independent | sin | 6 | NA |
| 159 | 19.78 | temperature | 25.0 | 90 | < th | dose independent | rect. | 3 | 10 |
| 170 | 19.79 | wind | 5.0 | 270 | < th | dose independent | rect. | 6 | 19 |
| 217 | 19.85 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 23 | 15 |
| 229 | 19.88 | temperature | 25.0 | 270 | > th | dose independent | rect. | 8 | 2 |
| 231 | 19.88 | wind | 5.0 | 90 | < th | dose independent | rect. | 8 | 16 |
| 267 | 19.92 | temperature | 25.0 | 270 | > th | dose independent | rect. | 4 | 8 |
| 276 | 19.92 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 1 | 20 |
| 296 | 19.94 | temperature | 10.0 | 10 | > th | dose dependent | sin | 3 | NA |
| 302 | 19.94 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 8 | 17 |
| 312 | 19.96 | wind | 5.0 | 270 | < th | dose independent | rect. | 6 | 7 |
| 332 | 19.97 | temperature | 15.0 | 10 | > th | dose independent | rect. | 16 | 16 |
| 337 | 19.97 | temperature | 20.0 | 90 | > th | dose dependent | sin | 5 | NA |
| 356 | 19.99 | wind | 7.0 | 10 | < th | dose independent | rect. | 8 | 8 |
| 410 | 20.03 | temperature | 25.0 | 10 | > th | dose independent | rect. | 8 | 4 |
| 422 | 20.03 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 3 | 18 |
| 450 | 20.06 | temperature | 15.0 | 270 | > th | dose independent | rect. | 13 | 17 |
| 510 | 20.10 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 1 | 5 |
| 513 | 20.10 | wind | 9.0 | 90 | < th | dose dependent | rect. | 8 | 16 |
| 516 | 20.11 | temperature | 25.0 | 270 | < th | dose independent | rect. | 3 | 2 |
| 517 | 20.11 | wind | 7.0 | 10 | < th | dose independent | rect. | 8 | 6 |
| 527 | 20.11 | radiation | 20.0 | 270 | < th | dose dependent | rect. | 1 | 10 |
| 569 | 20.14 | wind | 7.0 | 270 | < th | dose independent | rect. | 20 | 15 |
| 583 | 20.15 | humidity | 90.0 | 10 | < th | dose independent | rect. | 8 | 8 |
| 621 | 20.16 | wind | 9.0 | 270 | < th | dose dependent | rect. | 6 | 19 |
| 631 | 20.17 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 23 | 13 |
| 657 | 20.19 | temperature | 15.0 | 10 | > th | dose independent | rect. | 14 | 18 |
| 669 | 20.19 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 8 | 19 |
| 705 | 20.22 | wind | 3.0 | 14400 | < th | dose independent | rect. | 1 | 3 |
| 712 | 20.22 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 726 | 20.23 | radiation | 10.0 | 30 | > th | dose independent | rect. | 8 | 6 |
| 750 | 20.24 | humidity | 90.0 | 270 | < th | dose independent | rect. | 6 | 6 |
| 761 | 20.24 | temperature | 20.0 | 30 | > th | dose dependent | rect. | 2 | 12 |
| 777 | 20.25 | wind | 9.0 | 270 | < th | dose dependent | rect. | 6 | 8 |
| 795 | 20.26 | humidity | 90.0 | 10 | < th | dose independent | rect. | 8 | 6 |
| 804 | 20.26 | atmosphere | 1015.0 | 270 | < th | dose dependent | rect. | 1 | 5 |
| 807 | 20.26 | wind | 3.0 | 43200 | < th | dose dependent | rect. | 21 | 9 |
| 821 | 20.26 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 8 | 21 |
| 823 | 20.27 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 836 | 20.27 | radiation | 20.0 | 270 | < th | dose dependent | sin | 7 | NA |
| 849 | 20.28 | wind | 3.0 | 14400 | < th | dose independent | rect. | 22 | 6 |
| 859 | 20.28 | humidity | 90.0 | 270 | > th | dose independent | rect. | 1 | 17 |
| 889 | 20.29 | wind | 7.0 | 14400 | > th | dose dependent | rect. | 12 | 1 |
| 901 | 20.30 | wind | 9.0 | 14400 | < th | dose independent | rect. | 12 | 1 |
| 914 | 20.30 | wind | 9.0 | 90 | < th | dose dependent | rect. | 8 | 8 |
| 956 | 20.32 | humidity | 90.0 | 270 | < th | dose independent | rect. | 7 | 4 |
| 962 | 20.32 | atmosphere | 1015.0 | 90 | < th | dose independent | rect. | 8 | 16 |
| 983 | 20.33 | wind | 5.0 | 270 | < th | dose independent | rect. | 7 | 4 |