Os05g0105100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Small GTPase rab11-related.
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Os05g0105100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Small GTPase rab11-related.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 62.88 | 0.373 | 10.1 | -1.07 | 0.63 | 2.25 | 0.537 | -2.94 | -0.339 | 0.64 | 20.18 | 1318 | -- | -- |
| 66.06 | 0.379 | 10 | -0.352 | 0.76 | 2.53 | 0.252 | -- | -0.148 | 2.28 | 16.72 | 2030 | -- | -- |
| 64.02 | 0.373 | 10.1 | -1.01 | 0.627 | 2.26 | -- | -2.65 | -0.321 | 0.77 | 19.93 | 1313 | -- | -- |
| 66.19 | 0.379 | 10 | -0.423 | 0.757 | 2.68 | -- | -- | -0.144 | 2.18 | 15.41 | 2000 | -- | -- |
| 77.25 | 0.409 | 10.1 | -0.945 | -- | 2.58 | -- | -2.48 | -0.315 | -- | 19.57 | 1089 | -- | -- |
| 199.76 | 0.663 | 9.94 | 0.524 | 0.867 | -- | 0.482 | -- | 0.378 | 1.04 | -- | -- | -- | -- |
| 200.72 | 0.663 | 9.94 | 0.506 | 0.867 | -- | -- | -- | 0.375 | 1.11 | -- | -- | -- | -- |
| 80.15 | 0.417 | 10 | -0.372 | -- | 2.97 | -- | -- | -0.148 | -- | 16 | 1070 | -- | -- |
| 70.08 | 0.39 | 10 | -- | 0.802 | 2.42 | -- | -- | -0.082 | 2.07 | 16.7 | 1944 | -- | -- |
| 247.41 | 0.735 | 9.93 | 0.539 | -- | -- | -- | -- | 0.392 | -- | -- | -- | -- | -- |
| 207.47 | 0.674 | 9.95 | -- | 0.876 | -- | -- | -- | 0.319 | 1.13 | -- | -- | -- | -- |
| 83.51 | 0.426 | 10 | -- | -- | 2.75 | -- | -- | -0.133 | -- | 16.76 | 1059 | -- | -- |
| 255.07 | 0.745 | 9.94 | -- | -- | -- | -- | -- | 0.333 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 59.88 | temperature | 20 | 1440 | > th | dose dependent | rect. | 15 | 17 |
| 17 | 60.78 | temperature | 20 | 1440 | > th | dose dependent | sin | 14 | NA |
| 154 | 63.38 | temperature | 20 | 1440 | > th | dose dependent | no | NA | NA |
| 169 | 63.48 | temperature | 20 | 1440 | > th | dose dependent | rect. | 24 | 23 |
| 170 | 63.49 | temperature | 20 | 1440 | > th | dose dependent | rect. | 20 | 23 |
| 196 | 63.70 | temperature | 20 | 1440 | > th | dose dependent | rect. | 6 | 23 |
| 277 | 64.45 | temperature | 30 | 1440 | < th | dose dependent | rect. | 15 | 17 |
| 511 | 65.64 | temperature | 30 | 1440 | < th | dose dependent | sin | 14 | NA |
| 655 | 66.29 | temperature | 20 | 1440 | > th | dose dependent | rect. | 3 | 5 |
| 728 | 66.63 | temperature | 30 | 1440 | < th | dose dependent | rect. | 16 | 7 |
| 791 | 66.91 | temperature | 20 | 1440 | > th | dose dependent | rect. | 6 | 1 |
| 976 | 67.75 | temperature | 30 | 1440 | < th | dose dependent | rect. | 24 | 23 |
| 981 | 67.79 | temperature | 30 | 1440 | < th | dose dependent | no | NA | NA |
| 986 | 67.80 | temperature | 10 | 1440 | > th | dose dependent | rect. | 17 | 2 |