Os05g0461300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to RAB8C.
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Os05g0461300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to RAB8C.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 23.11 | 0.226 | 12.9 | -0.977 | 1.09 | -0.0228 | 0.577 | -2.84 | 0.124 | 2.9 | 13.37 | 11660 | -- | -- |
| 31.11 | 0.26 | 12.7 | -0.416 | 1.09 | 0.283 | 0.566 | -- | 0.272 | 2.9 | 8.865 | 14971 | -- | -- |
| 23.15 | 0.224 | 12.9 | -0.983 | 1.1 | -0.143 | -- | -3.13 | 0.104 | 2.92 | 13.75 | 18995 | -- | -- |
| 30.82 | 0.259 | 12.7 | -0.376 | 1.08 | 0.378 | -- | -- | 0.308 | 2.97 | 9.257 | 3318 | -- | -- |
| 79.37 | 0.417 | 12.7 | -0.34 | -- | -1.03 | -- | -2.63 | 0.454 | -- | 13.75 | 18995 | -- | -- |
| 32.27 | 0.266 | 12.7 | -0.208 | 1.09 | -- | 0.569 | -- | 0.386 | 2.89 | -- | -- | -- | -- |
| 33.37 | 0.271 | 12.7 | -0.221 | 1.09 | -- | -- | -- | 0.382 | 2.92 | -- | -- | -- | -- |
| 85.24 | 0.432 | 12.7 | 0.0226 | -- | -1.08 | -- | -- | 0.554 | -- | 13.75 | 18995 | -- | -- |
| 33.78 | 0.271 | 12.7 | -- | 1.07 | 0.192 | -- | -- | 0.369 | 2.89 | 14.5 | 2837 | -- | -- |
| 102.09 | 0.472 | 12.7 | -0.174 | -- | -- | -- | -- | 0.411 | -- | -- | -- | -- | -- |
| 34.65 | 0.275 | 12.7 | -- | 1.09 | -- | -- | -- | 0.407 | 2.92 | -- | -- | -- | -- |
| 84.43 | 0.429 | 12.7 | -- | -- | -0.993 | -- | -- | 0.554 | -- | 16.59 | 1092 | -- | -- |
| 102.89 | 0.473 | 12.7 | -- | -- | -- | -- | -- | 0.43 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 21.70 | temperature | 25 | 270 | < th | dose dependent | sin | 14 | NA |
| 2 | 21.72 | temperature | 25 | 90 | < th | dose dependent | sin | 12 | NA |
| 5 | 21.83 | temperature | 25 | 10 | < th | dose dependent | sin | 12 | NA |
| 11 | 21.98 | temperature | 25 | 90 | < th | dose dependent | rect. | 17 | 12 |
| 15 | 22.02 | temperature | 25 | 90 | < th | dose dependent | rect. | 17 | 16 |
| 19 | 22.06 | temperature | 25 | 10 | < th | dose dependent | rect. | 16 | 18 |
| 23 | 22.11 | temperature | 25 | 720 | < th | dose dependent | rect. | 17 | 6 |
| 30 | 22.15 | temperature | 25 | 720 | < th | dose dependent | rect. | 16 | 8 |
| 49 | 22.23 | temperature | 20 | 14400 | < th | dose independent | rect. | 20 | 5 |
| 50 | 22.23 | temperature | 20 | 14400 | < th | dose independent | rect. | 19 | 7 |
| 56 | 22.25 | temperature | 25 | 14400 | < th | dose dependent | rect. | 7 | 2 |
| 63 | 22.27 | temperature | 20 | 14400 | > th | dose independent | rect. | 20 | 6 |
| 64 | 22.27 | temperature | 20 | 14400 | > th | dose independent | rect. | 19 | 8 |
| 97 | 22.36 | temperature | 15 | 14400 | > th | dose dependent | rect. | 7 | 2 |
| 137 | 22.43 | humidity | 80 | 43200 | > th | dose dependent | rect. | 12 | 1 |
| 147 | 22.44 | temperature | 20 | 14400 | > th | dose independent | rect. | 18 | 15 |
| 150 | 22.45 | temperature | 20 | 14400 | > th | dose independent | sin | 13 | NA |
| 162 | 22.47 | temperature | 20 | 14400 | < th | dose independent | sin | 13 | NA |
| 163 | 22.47 | temperature | 20 | 14400 | < th | dose independent | rect. | 20 | 1 |
| 173 | 22.47 | temperature | 30 | 14400 | < th | dose dependent | rect. | 7 | 7 |
| 230 | 22.53 | temperature | 20 | 14400 | > th | dose independent | rect. | 21 | 2 |
| 388 | 22.63 | temperature | 30 | 14400 | < th | dose dependent | sin | 3 | NA |
| 411 | 22.64 | temperature | 30 | 14400 | < th | dose dependent | rect. | 13 | 1 |
| 443 | 22.65 | temperature | 10 | 14400 | > th | dose dependent | rect. | 2 | 12 |
| 623 | 22.72 | temperature | 10 | 14400 | > th | dose dependent | sin | 4 | NA |
| 933 | 22.80 | temperature | 15 | 14400 | > th | dose dependent | rect. | 11 | 3 |
| 966 | 22.80 | temperature | 30 | 14400 | < th | dose dependent | rect. | 7 | 21 |
| 973 | 22.81 | temperature | 20 | 14400 | > th | dose independent | rect. | 24 | 1 |
| 985 | 22.81 | temperature | 15 | 14400 | > th | dose dependent | rect. | 13 | 1 |
| 986 | 22.81 | temperature | 25 | 14400 | < th | dose dependent | rect. | 21 | 1 |
| 991 | 22.81 | temperature | 25 | 14400 | < th | dose dependent | rect. | 20 | 3 |