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Os10g0441800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to RAB5B.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10.5 (0.0154) R2 : 0.117
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.252 (0.0324) R2dN8 : 0.152 R2N8 : 0.117
σ : 0.29
deviance : 38.6
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
22.96 0.225 10.5 -0.227 0.445 -0.0913 0.457 1.52 0.167 8.16 0.3597 8699 -- --
26 0.237 10.5 0.122 0.443 0.109 0.454 -- 0.304 8.14 20 21464 -- --
23.16 0.224 10.5 -0.237 0.444 -0.0824 -- 1.71 0.159 8.17 0.3654 8270 -- --
26.45 0.24 10.5 0.12 0.451 0.129 -- -- 0.307 8.21 60 21582 -- --
29.56 0.253 10.6 -0.174 -- 0.661 -- 3.24 0.13 -- 0.0002368 5221 -- --
26.74 0.242 10.5 0.115 0.445 -- 0.417 -- 0.262 8.19 -- -- -- --
27.27 0.245 10.5 0.127 0.444 -- -- -- 0.262 8.18 -- -- -- --
29.21 0.252 10.5 0.181 -- 0.508 -- -- 0.314 -- 32.94 865 -- --
26.64 0.24 10.5 -- 0.444 0.171 -- -- 0.309 8.19 60 20464 -- --
38.15 0.289 10.5 0.131 -- -- -- -- 0.267 -- -- -- -- --
27.69 0.246 10.5 -- 0.445 -- -- -- 0.248 8.16 -- -- -- --
29.96 0.255 10.5 -- -- 0.495 -- -- 0.297 -- 30 860 -- --
38.6 0.29 10.5 -- -- -- -- -- 0.252 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 22.54 radiation 1.0 4320 > th dose independent rect. 18 1
11 22.58 wind 1.0 14400 < th dose independent rect. 23 1
12 22.59 precipitation 0.1 43200 > th dose dependent rect. 20 2
13 22.64 precipitation 0.1 43200 < th dose independent rect. 20 1
14 22.64 precipitation 0.1 43200 < th dose dependent rect. 20 1
16 22.64 precipitation 0.1 43200 > th dose dependent rect. 14 5
17 22.65 wind 1.0 43200 > th dose independent rect. 2 1
18 22.65 precipitation 0.1 43200 > th dose independent rect. 20 2
21 22.67 wind 1.0 14400 > th dose independent rect. 23 1
23 22.67 humidity 90.0 14400 > th dose dependent rect. 20 8
24 22.67 humidity 90.0 14400 > th dose dependent rect. 19 10
25 22.69 wind 1.0 14400 > th dose independent rect. 19 2
27 22.69 precipitation 0.1 43200 > th dose dependent rect. 12 7
29 22.70 humidity 90.0 14400 > th dose dependent rect. 2 8
31 22.70 humidity 90.0 14400 > th dose dependent rect. 24 10
38 22.72 precipitation 0.1 43200 > th dose independent rect. 14 4
43 22.72 precipitation 0.1 43200 > th dose dependent rect. 14 8
45 22.73 humidity 90.0 14400 > th dose dependent sin 8 NA
48 22.73 humidity 90.0 14400 > th dose dependent rect. 21 12
51 22.74 precipitation 0.1 43200 < th dose independent rect. 14 4
52 22.74 precipitation 0.1 43200 < th dose independent rect. 17 5
55 22.74 precipitation 0.1 43200 < th dose dependent rect. 14 4
56 22.74 precipitation 0.1 43200 < th dose dependent rect. 17 5
60 22.74 precipitation 0.1 43200 > th dose dependent rect. 12 10
75 22.76 precipitation 0.1 43200 > th dose independent rect. 17 5
83 22.77 radiation 1.0 14400 < th dose independent rect. 18 3
85 22.77 precipitation 0.1 14400 < th dose independent rect. 6 5
86 22.77 precipitation 0.1 14400 < th dose dependent rect. 6 5
92 22.78 radiation 1.0 14400 < th dose independent rect. 18 1
96 22.78 precipitation 0.1 43200 > th dose independent rect. 14 8
97 22.78 precipitation 0.1 43200 < th dose independent rect. 14 8
102 22.78 precipitation 0.1 43200 < th dose dependent rect. 14 8
114 22.79 precipitation 0.1 14400 > th dose independent rect. 6 3
115 22.79 precipitation 0.1 14400 > th dose independent rect. 6 5
127 22.79 precipitation 0.1 14400 > th dose dependent rect. 6 3
128 22.79 precipitation 0.1 14400 > th dose dependent rect. 6 5
138 22.79 precipitation 0.1 43200 > th dose dependent rect. 8 14
224 22.84 precipitation 0.1 43200 > th dose dependent rect. 17 6
234 22.85 wind 1.0 14400 < th dose independent rect. 19 2
235 22.85 precipitation 0.1 43200 < th dose independent rect. 17 2
241 22.85 precipitation 0.1 43200 < th dose dependent rect. 17 2
253 22.86 precipitation 0.1 14400 < th dose independent rect. 6 3
256 22.86 wind 1.0 14400 < th dose independent rect. 19 6
261 22.86 precipitation 0.1 14400 < th dose dependent rect. 6 3
274 22.87 wind 1.0 43200 < th dose independent rect. 2 1
275 22.87 precipitation 0.1 43200 > th dose independent rect. 17 2
279 22.87 wind 1.0 14400 > th dose independent rect. 19 6
305 22.89 wind 1.0 14400 < th dose dependent rect. 23 1
330 22.90 precipitation 0.1 43200 > th dose dependent sin 18 NA
345 22.90 radiation 40.0 43200 > th dose dependent rect. 15 17
381 22.93 humidity 90.0 14400 > th dose independent rect. 20 8
410 22.95 radiation 10.0 43200 < th dose independent rect. 17 13
411 22.95 precipitation 0.1 43200 > th dose independent rect. 9 13
413 22.95 precipitation 0.1 43200 < th dose independent rect. 9 13
426 22.95 precipitation 0.1 43200 < th dose dependent rect. 9 13
437 22.96 precipitation 0.1 14400 < th dose independent rect. 6 1
450 22.96 precipitation 0.1 14400 < th dose dependent rect. 6 1
465 22.97 radiation 40.0 43200 < th dose independent rect. 16 5
480 22.97 wind 1.0 43200 < th dose dependent rect. 2 1
481 22.97 temperature 25.0 1440 < th dose dependent rect. 8 1
482 22.97 humidity 90.0 14400 > th dose dependent rect. 24 1
484 22.97 wind 1.0 14400 < th dose dependent rect. 19 6
489 22.97 radiation 1.0 14400 < th dose dependent rect. 19 10
500 22.98 precipitation 0.1 14400 > th dose independent rect. 8 2
511 22.98 precipitation 0.1 14400 > th dose dependent rect. 8 2
546 23.01 precipitation 0.1 43200 > th dose independent sin 18 NA
547 23.01 precipitation 0.1 43200 < th dose independent sin 18 NA
558 23.01 precipitation 0.1 43200 < th dose dependent sin 18 NA
570 23.02 temperature 20.0 4320 < th dose independent rect. 20 1
572 23.02 radiation 1.0 43200 < th dose independent rect. 3 2
573 23.02 radiation 10.0 14400 < th dose independent rect. 11 3
583 23.02 radiation 1.0 14400 < th dose dependent rect. 23 6
598 23.03 precipitation 0.1 14400 > th dose independent rect. 6 1
612 23.03 precipitation 0.1 14400 > th dose dependent rect. 6 1
654 23.04 humidity 90.0 14400 > th dose dependent rect. 23 3
688 23.05 radiation 30.0 43200 < th dose dependent rect. 3 2
703 23.06 wind 1.0 43200 < th dose independent rect. 2 4
719 23.07 radiation 1.0 43200 > th dose independent rect. 4 1
738 23.07 radiation 1.0 43200 > th dose dependent rect. 4 1
766 23.08 radiation 30.0 43200 < th dose independent rect. 16 15
795 23.10 radiation 10.0 14400 < th dose independent rect. 13 1
798 23.10 radiation 30.0 43200 < th dose independent rect. 3 4
827 23.11 radiation 1.0 14400 < th dose dependent rect. 6 2
836 23.11 radiation 1.0 1440 < th dose dependent rect. 18 11
844 23.12 humidity 90.0 14400 > th dose independent rect. 23 1
867 23.12 radiation 1.0 1440 < th dose dependent rect. 18 4
893 23.13 radiation 1.0 1440 < th dose dependent rect. 18 2
923 23.14 wind 1.0 14400 < th dose dependent rect. 19 3
967 23.16 radiation 30.0 43200 < th dose independent rect. 16 1
995 23.16 radiation 1.0 1440 < th dose dependent rect. 18 7