Os08g0525000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Ras GTPase family protein.
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Os08g0525000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Ras GTPase family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 77.09 | 0.413 | 9.34 | -0.454 | 0.755 | 0.577 | 0.976 | -0.765 | -0.17 | 22.9 | 7.889 | 12 | -- | -- |
| 78.08 | 0.412 | 9.32 | -0.412 | 0.752 | 0.58 | 0.209 | -- | -0.157 | 22.8 | 7.534 | 12 | -- | -- |
| 78.01 | 0.411 | 9.33 | -0.454 | 0.768 | 0.562 | -- | -0.0679 | -0.17 | 22.8 | 7.52 | 12 | -- | -- |
| 78.03 | 0.411 | 9.33 | -0.45 | 0.781 | 0.554 | -- | -- | -0.168 | 22.8 | 7.52 | 12 | -- | -- |
| 90.16 | 0.442 | 9.34 | -0.496 | -- | 1.07 | -- | -0.15 | -0.211 | -- | 7.08 | 12 | -- | -- |
| 86.26 | 0.435 | 9.35 | -0.413 | 1.38 | -- | 0.152 | -- | -0.193 | 23.3 | -- | -- | -- | -- |
| 86.36 | 0.435 | 9.35 | -0.419 | 1.38 | -- | -- | -- | -0.194 | 23.3 | -- | -- | -- | -- |
| 89.78 | 0.441 | 9.31 | -0.48 | -- | 1.06 | -- | -- | -0.147 | -- | 7.565 | 12 | -- | -- |
| 83.27 | 0.425 | 9.33 | -- | 0.79 | 0.546 | -- | -- | -0.133 | 22.8 | 7.57 | 9 | -- | -- |
| 204.86 | 0.669 | 9.32 | -0.385 | -- | -- | -- | -- | -0.181 | -- | -- | -- | -- | -- |
| 91 | 0.446 | 9.34 | -- | 1.37 | -- | -- | -- | -0.147 | 23.2 | -- | -- | -- | -- |
| 95.86 | 0.456 | 9.3 | -- | -- | 1.04 | -- | -- | -0.0957 | -- | 7.557 | 12 | -- | -- |
| 208.77 | 0.674 | 9.31 | -- | -- | -- | -- | -- | -0.138 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 72.68 | radiation | 10.0 | 90 | < th | dose dependent | rect. | 3 | 10 |
| 2 | 72.80 | radiation | 10.0 | 90 | < th | dose dependent | rect. | 3 | 8 |
| 12 | 73.30 | radiation | 1.0 | 90 | < th | dose independent | rect. | 3 | 4 |
| 15 | 73.38 | humidity | 50.0 | 30 | > th | dose dependent | rect. | 3 | 3 |
| 17 | 73.41 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 6 | 21 |
| 18 | 73.41 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 6 | 21 |
| 19 | 73.43 | wind | 9.0 | 10 | < th | dose independent | rect. | 6 | 21 |
| 27 | 73.53 | radiation | 1.0 | 90 | < th | dose independent | rect. | 3 | 10 |
| 28 | 73.53 | wind | 5.0 | 90 | < th | dose independent | rect. | 6 | 21 |
| 32 | 73.62 | wind | 9.0 | 30 | < th | dose independent | rect. | 3 | 3 |
| 33 | 73.62 | temperature | 10.0 | 30 | > th | dose independent | rect. | 3 | 3 |
| 35 | 73.62 | temperature | 30.0 | 30 | < th | dose independent | rect. | 3 | 3 |
| 36 | 73.62 | humidity | 50.0 | 30 | > th | dose independent | rect. | 3 | 3 |
| 39 | 73.62 | atmosphere | 995.0 | 30 | > th | dose independent | rect. | 3 | 3 |
| 40 | 73.62 | atmosphere | 1010.0 | 30 | < th | dose independent | rect. | 3 | 3 |
| 42 | 73.62 | radiation | 20.0 | 30 | < th | dose independent | rect. | 3 | 3 |
| 45 | 73.62 | temperature | 10.0 | 30 | > th | dose independent | rect. | 6 | 21 |
| 47 | 73.67 | radiation | 40.0 | 30 | < th | dose dependent | rect. | 3 | 3 |
| 70 | 73.77 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 3 | 3 |
| 72 | 73.77 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 3 | 3 |
| 73 | 73.80 | wind | 9.0 | 30 | < th | dose dependent | rect. | 3 | 3 |
| 74 | 73.80 | radiation | 1.0 | 90 | < th | dose dependent | rect. | 3 | 3 |
| 88 | 74.00 | atmosphere | 995.0 | 30 | > th | dose dependent | rect. | 3 | 3 |
| 100 | 74.10 | atmosphere | 995.0 | 10 | > th | dose independent | rect. | 16 | 14 |
| 111 | 74.17 | wind | 9.0 | 90 | < th | dose dependent | rect. | 6 | 21 |
| 112 | 74.20 | temperature | 10.0 | 30 | > th | dose dependent | rect. | 3 | 3 |
| 135 | 74.36 | radiation | 30.0 | 10 | < th | dose independent | rect. | 16 | 14 |
| 140 | 74.39 | precipitation | 0.1 | 10 | < th | dose independent | rect. | 6 | 10 |
| 141 | 74.39 | precipitation | 0.1 | 10 | < th | dose dependent | rect. | 6 | 10 |
| 144 | 74.42 | radiation | 10.0 | 90 | < th | dose dependent | rect. | 3 | 14 |
| 146 | 74.43 | temperature | 10.0 | 10 | > th | dose independent | rect. | 6 | 10 |
| 148 | 74.43 | atmosphere | 1015.0 | 10 | < th | dose independent | rect. | 6 | 10 |
| 149 | 74.43 | temperature | 10.0 | 10 | > th | dose independent | rect. | 16 | 14 |
| 180 | 74.64 | wind | 9.0 | 30 | < th | dose independent | rect. | 6 | 10 |
| 188 | 74.67 | atmosphere | 995.0 | 10 | > th | dose independent | rect. | 6 | 10 |
| 200 | 74.77 | wind | 9.0 | 1440 | < th | dose independent | rect. | 4 | 3 |
| 201 | 74.77 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 4 | 3 |
| 204 | 74.77 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 4 | 3 |
| 208 | 74.77 | humidity | 50.0 | 1440 | > th | dose independent | rect. | 4 | 3 |
| 213 | 74.77 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 4 | 3 |
| 214 | 74.77 | atmosphere | 1015.0 | 1440 | < th | dose independent | rect. | 4 | 3 |
| 215 | 74.77 | radiation | 40.0 | 1440 | < th | dose independent | rect. | 4 | 3 |
| 219 | 74.77 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 7 | 21 |
| 242 | 74.91 | atmosphere | 995.0 | 30 | > th | dose independent | rect. | 6 | 21 |
| 243 | 74.92 | atmosphere | 1015.0 | 10 | < th | dose independent | rect. | 16 | 14 |
| 251 | 74.99 | wind | 9.0 | 30 | < th | dose independent | rect. | 16 | 14 |
| 252 | 74.99 | radiation | 10.0 | 30 | < th | dose dependent | sin | 3 | NA |
| 255 | 75.02 | radiation | 40.0 | 10 | < th | dose dependent | rect. | 16 | 14 |
| 258 | 75.04 | wind | 1.0 | 30 | > th | dose independent | rect. | 6 | 21 |
| 288 | 75.12 | wind | 1.0 | 10 | > th | dose independent | rect. | 6 | 10 |
| 300 | 75.19 | radiation | 1.0 | 10 | > th | dose independent | rect. | 6 | 10 |
| 304 | 75.21 | precipitation | 0.1 | 10 | < th | dose independent | rect. | 16 | 14 |
| 305 | 75.21 | precipitation | 0.1 | 10 | < th | dose dependent | rect. | 16 | 14 |
| 317 | 75.26 | wind | 9.0 | 30 | < th | dose dependent | rect. | 6 | 10 |
| 320 | 75.29 | humidity | 80.0 | 10 | > th | dose dependent | rect. | 3 | 7 |
| 323 | 75.31 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 3 | 2 |
| 325 | 75.32 | temperature | 25.0 | 90 | < th | dose independent | rect. | 1 | 5 |
| 347 | 75.48 | atmosphere | 1015.0 | 30 | < th | dose independent | rect. | 6 | 21 |
| 348 | 75.48 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 2 | 1 |
| 360 | 75.55 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 7 | 10 |
| 363 | 75.55 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 17 | 14 |
| 366 | 75.55 | radiation | 40.0 | 1440 | < th | dose independent | rect. | 17 | 14 |
| 406 | 75.68 | humidity | 50.0 | 10 | > th | dose independent | rect. | 16 | 14 |
| 428 | 75.76 | wind | 5.0 | 90 | < th | dose independent | rect. | 6 | 10 |
| 441 | 75.82 | radiation | 10.0 | 10 | < th | dose independent | rect. | 8 | 22 |
| 446 | 75.85 | atmosphere | 1015.0 | 10 | < th | dose dependent | rect. | 16 | 14 |
| 458 | 75.90 | atmosphere | 1015.0 | 90 | < th | dose dependent | rect. | 3 | 2 |
| 516 | 76.05 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 6 | 21 |
| 551 | 76.14 | temperature | 25.0 | 270 | < th | dose independent | rect. | 1 | 2 |
| 568 | 76.14 | atmosphere | 1015.0 | 10 | < th | dose dependent | rect. | 3 | 3 |
| 591 | 76.20 | wind | 1.0 | 43200 | < th | dose independent | rect. | 2 | 1 |
| 626 | 76.27 | radiation | 1.0 | 90 | > th | dose independent | sin | 3 | NA |
| 627 | 76.28 | radiation | 1.0 | 90 | < th | dose independent | sin | 3 | NA |
| 645 | 76.29 | radiation | 40.0 | 10 | < th | dose dependent | rect. | 12 | 18 |
| 651 | 76.31 | humidity | 50.0 | 30 | > th | dose independent | rect. | 6 | 21 |
| 678 | 76.34 | temperature | 25.0 | 30 | < th | dose independent | rect. | 3 | 7 |
| 681 | 76.35 | wind | 1.0 | 43200 | > th | dose independent | rect. | 2 | 1 |
| 682 | 76.35 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 24 | 1 |
| 684 | 76.35 | humidity | 50.0 | 30 | > th | dose independent | rect. | 6 | 10 |
| 690 | 76.37 | radiation | 10.0 | 10 | < th | dose independent | rect. | 12 | 18 |
| 761 | 76.53 | radiation | 10.0 | 10 | < th | dose independent | rect. | 3 | 15 |
| 787 | 76.59 | wind | 1.0 | 270 | > th | dose independent | rect. | 2 | 1 |
| 888 | 76.71 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 23 | 8 |
| 889 | 76.71 | atmosphere | 1000.0 | 10 | > th | dose independent | rect. | 3 | 15 |
| 934 | 76.81 | radiation | 1.0 | 4320 | < th | dose independent | rect. | 18 | 11 |
| 1000 | 76.90 | wind | 1.0 | 270 | > th | dose independent | rect. | 1 | 3 |