Os05g0536900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to RAB7A.
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Os05g0536900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to RAB7A.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 68.72 | 0.389 | 9.83 | 0.478 | 0.963 | -0.527 | 0.746 | -0.0643 | 0.292 | 20.3 | 25.2 | 240 | -- | -- |
| 68.72 | 0.386 | 9.83 | 0.495 | 0.962 | -0.527 | 0.736 | -- | 0.294 | 20.3 | 25.21 | 237 | -- | -- |
| 70.39 | 0.391 | 9.83 | 0.476 | 0.963 | -0.522 | -- | 0.0369 | 0.286 | 20.4 | 25.2 | 238 | -- | -- |
| 70.38 | 0.391 | 9.83 | 0.468 | 0.954 | -0.515 | -- | -- | 0.291 | 20.4 | 25.2 | 237 | -- | -- |
| 107.68 | 0.486 | 9.84 | 0.264 | -- | -0.33 | -- | -0.518 | 0.145 | -- | 25.7 | 64 | -- | -- |
| 82.2 | 0.425 | 9.88 | 0.339 | 0.795 | -- | 0.524 | -- | 0.0656 | 21.9 | -- | -- | -- | -- |
| 83.24 | 0.427 | 9.88 | 0.318 | 0.792 | -- | -- | -- | 0.0641 | 22 | -- | -- | -- | -- |
| 108.74 | 0.486 | 9.81 | 0.413 | -- | -0.371 | -- | -- | 0.245 | -- | 25.07 | 40 | -- | -- |
| 75.92 | 0.406 | 9.84 | -- | 0.906 | -0.445 | -- | -- | 0.212 | 20.6 | 25.3 | 230 | -- | -- |
| 120.92 | 0.514 | 9.86 | 0.327 | -- | -- | -- | -- | 0.0645 | -- | -- | -- | -- | -- |
| 85.9 | 0.434 | 9.88 | -- | 0.793 | -- | -- | -- | 0.0287 | 22 | -- | -- | -- | -- |
| 113.26 | 0.496 | 9.83 | -- | -- | -0.343 | -- | -- | 0.183 | -- | 25.01 | 48 | -- | -- |
| 123.75 | 0.519 | 9.86 | -- | -- | -- | -- | -- | 0.0282 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 53.81 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 7 | 16 |
| 10 | 56.94 | temperature | 15.0 | 90 | > th | dose dependent | rect. | 7 | 6 |
| 16 | 57.30 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 7 | 7 |
| 24 | 57.71 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 8 | 17 |
| 46 | 58.56 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 18 | 17 |
| 49 | 58.70 | temperature | 25.0 | 270 | > th | dose dependent | rect. | 18 | 17 |
| 75 | 59.33 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 17 | 19 |
| 92 | 59.86 | atmosphere | 995.0 | 90 | > th | dose dependent | rect. | 13 | 18 |
| 94 | 59.87 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 16 | 21 |
| 105 | 60.18 | temperature | 25.0 | 270 | > th | dose dependent | sin | 9 | NA |
| 140 | 60.93 | temperature | 25.0 | 270 | > th | dose independent | rect. | 18 | 17 |
| 145 | 61.16 | temperature | 25.0 | 270 | > th | dose independent | rect. | 17 | 19 |
| 161 | 61.34 | atmosphere | 995.0 | 270 | > th | dose dependent | rect. | 11 | 20 |
| 176 | 61.49 | atmosphere | 995.0 | 270 | > th | dose dependent | rect. | 11 | 7 |
| 184 | 61.56 | temperature | 30.0 | 90 | < th | dose independent | rect. | 13 | 18 |
| 203 | 61.87 | atmosphere | 995.0 | 10 | > th | dose dependent | rect. | 14 | 18 |
| 239 | 62.26 | humidity | 60.0 | 90 | > th | dose independent | rect. | 13 | 18 |
| 253 | 62.39 | temperature | 30.0 | 270 | < th | dose independent | rect. | 1 | 16 |
| 311 | 62.94 | atmosphere | 1000.0 | 90 | > th | dose independent | rect. | 13 | 18 |
| 325 | 63.11 | temperature | 25.0 | 270 | > th | dose independent | rect. | 7 | 3 |
| 332 | 63.17 | temperature | 30.0 | 270 | < th | dose independent | rect. | 11 | 6 |
| 343 | 63.26 | temperature | 30.0 | 90 | < th | dose independent | rect. | 3 | 15 |
| 390 | 63.59 | humidity | 90.0 | 90 | < th | dose independent | rect. | 7 | 6 |
| 391 | 63.59 | temperature | 30.0 | 270 | < th | dose independent | rect. | 11 | 19 |
| 430 | 63.85 | temperature | 25.0 | 90 | > th | dose independent | rect. | 7 | 6 |
| 451 | 64.02 | temperature | 15.0 | 90 | > th | dose independent | rect. | 7 | 6 |
| 453 | 64.03 | radiation | 10.0 | 270 | < th | dose dependent | sin | 8 | NA |
| 475 | 64.14 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 17 | 8 |
| 510 | 64.31 | humidity | 60.0 | 270 | > th | dose independent | rect. | 12 | 5 |
| 519 | 64.34 | humidity | 50.0 | 90 | > th | dose independent | rect. | 7 | 6 |
| 551 | 64.49 | radiation | 1.0 | 270 | > th | dose independent | rect. | 17 | 20 |
| 573 | 64.62 | atmosphere | 1000.0 | 270 | > th | dose independent | rect. | 11 | 19 |
| 590 | 64.72 | radiation | 40.0 | 10 | < th | dose independent | rect. | 13 | 18 |
| 601 | 64.78 | wind | 7.0 | 90 | < th | dose independent | rect. | 7 | 6 |
| 616 | 64.84 | wind | 1.0 | 90 | > th | dose independent | rect. | 7 | 6 |
| 623 | 64.85 | humidity | 50.0 | 90 | > th | dose dependent | rect. | 13 | 18 |
| 626 | 64.87 | radiation | 40.0 | 90 | < th | dose independent | rect. | 13 | 18 |
| 633 | 64.89 | atmosphere | 1005.0 | 270 | > th | dose independent | rect. | 12 | 6 |
| 654 | 65.03 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 7 | 6 |
| 657 | 65.03 | atmosphere | 1015.0 | 90 | < th | dose dependent | rect. | 7 | 6 |
| 658 | 65.03 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 7 | 6 |
| 660 | 65.04 | humidity | 50.0 | 10 | > th | dose independent | rect. | 7 | 7 |
| 668 | 65.08 | humidity | 60.0 | 270 | > th | dose independent | rect. | 13 | 3 |
| 670 | 65.08 | atmosphere | 995.0 | 90 | > th | dose independent | rect. | 7 | 6 |
| 671 | 65.08 | atmosphere | 1015.0 | 90 | < th | dose independent | rect. | 7 | 6 |
| 673 | 65.08 | temperature | 10.0 | 90 | > th | dose independent | rect. | 13 | 18 |
| 676 | 65.09 | radiation | 1.0 | 90 | > th | dose independent | rect. | 7 | 6 |
| 680 | 65.11 | wind | 9.0 | 90 | < th | dose independent | rect. | 13 | 18 |
| 692 | 65.16 | temperature | 30.0 | 270 | < th | dose independent | rect. | 13 | 3 |
| 806 | 65.51 | atmosphere | 1000.0 | 270 | > th | dose dependent | rect. | 13 | 3 |
| 814 | 65.53 | wind | 5.0 | 270 | < th | dose independent | rect. | 7 | 4 |
| 819 | 65.55 | humidity | 90.0 | 270 | < th | dose independent | rect. | 7 | 4 |
| 951 | 65.85 | atmosphere | 1015.0 | 270 | < th | dose dependent | rect. | 6 | 19 |
| 994 | 65.99 | radiation | 10.0 | 10 | > th | dose independent | rect. | 16 | 22 |
| 999 | 66.02 | wind | 1.0 | 270 | > th | dose independent | rect. | 7 | 4 |