BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os07g0479100 Os07g0479100|AK103576
(249 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os07g0479100 Zinc finger, RING-type domain containing protein 407 e-114
Os10g0544600 Fibrillarin family protein 201 4e-52
Os06g0717600 Zinc finger, RING-type domain containing protein 171 4e-43
Os08g0550400 Similar to RING-H2 finger protein ATL5P 166 1e-41
Os02g0743700 Similar to RING-H2 finger protein ATL1Q 121 4e-28
Os06g0231600 Zinc finger, RING-type domain containing protein 96 2e-20
Os09g0542600 Similar to RING-H2 finger protein ATL1I 89 4e-18
Os02g0832150 Zinc finger, RING-type domain containing protein 72 4e-13
Os12g0115600 72 5e-13
Os02g0541500 71 6e-13
Os02g0686100 Similar to RING-H2 finger protein ATL1B 70 1e-12
Os03g0149800 Similar to RING-H2 finger protein ATL1D 69 2e-12
Os02g0688800 Zinc finger, RING-type domain containing protein 69 4e-12
Os04g0590900 Similar to RING-H2 finger protein ATL1B 68 5e-12
Os01g0212700 Zinc finger, RING-type domain containing protein 68 6e-12
Os06g0666500 Zinc finger, RING-type domain containing protein 68 6e-12
Os05g0596500 Similar to RING-H2 finger protein ATL3I (YGHL1... 68 8e-12
Os06g0695900 Zinc finger, RING-type domain containing protein 67 1e-11
Os04g0586700 Zinc finger, RING-type domain containing protein 67 1e-11
Os01g0736600 Zinc finger, RING-type domain containing protein 67 1e-11
Os05g0478000 Zinc finger, RING-type domain containing protein 67 2e-11
AK064102 67 2e-11
Os08g0445000 Similar to RING-H2 finger protein ATL5A 67 2e-11
Os02g0820200 Zinc finger, RING-type domain containing protein 66 2e-11
Os02g0692000 Similar to RING finger family protein 66 3e-11
Os02g0729900 Zinc finger, RING-type domain containing protein 65 3e-11
Os11g0610600 Similar to RING-H2 finger protein ATL2N 65 3e-11
Os04g0419500 Zinc finger, RING-type domain containing protein 65 3e-11
Os06g0192800 Similar to RING-H2 finger protein ATL1R (RING-... 65 4e-11
Os01g0822800 Similar to RING-H2 finger protein ATL3C 65 4e-11
Os12g0596200 Similar to RING-H2 protein 65 4e-11
Os08g0484200 Zinc finger, RING-type domain containing protein 65 5e-11
Os11g0703300 65 6e-11
Os01g0755700 Zinc finger, RING-type domain containing protein 65 6e-11
Os04g0450400 Zinc finger, RING-type domain containing protein 65 6e-11
Os06g0187300 64 8e-11
Os12g0433100 Zinc finger, RING-type domain containing protein 64 9e-11
Os05g0359500 Similar to RING-H2 finger protein ATL5C precursor 64 9e-11
Os02g0790600 Similar to RING-H2 finger protein ATL1R (RING-... 64 1e-10
>Os07g0479100 Zinc finger, RING-type domain containing protein
Length = 249
Score = 407 bits (1047), Expect = e-114, Method: Compositional matrix adjust.
Identities = 201/226 (88%), Positives = 201/226 (88%)
Query: 24 GCCLDRLWRXXXXXXXXXXXXXXWTVCALLTCVFAVVGSLVGVFIGAFMGMSTESGMLRX 83
GCCLDRLWR WTVCALLTCVFAVVGSLVGVFIGAFMGMSTESGMLR
Sbjct: 24 GCCLDRLWRACGGCGAAAASAAGWTVCALLTCVFAVVGSLVGVFIGAFMGMSTESGMLRG 83
Query: 84 XXXXXXXXXXFSIEAVESCIEIWRSSESGKYSIIFVLDIISSLFSGRIVWEKVSPALQRA 143
FSIEAVESCIEIWRSSESGKYSIIFVLDIISSLFSGRIVWEKVSPALQRA
Sbjct: 84 AGVGVVSGAVFSIEAVESCIEIWRSSESGKYSIIFVLDIISSLFSGRIVWEKVSPALQRA 143
Query: 144 VQSQMSLLSTPFIDNNDLFETGNTGGMSRDLINRIPKTTFSAATNPDQETDNCCAVCLQD 203
VQSQMSLLSTPFIDNNDLFETGNTGGMSRDLINRIPKTTFSAATNPDQETDNCCAVCLQD
Sbjct: 144 VQSQMSLLSTPFIDNNDLFETGNTGGMSRDLINRIPKTTFSAATNPDQETDNCCAVCLQD 203
Query: 204 FGASQFVRVLPHCQHTFHARCIDNWLFRHASCPLCRAGVHIDHIHM 249
FGASQFVRVLPHCQHTFHARCIDNWLFRHASCPLCRAGVHIDHIHM
Sbjct: 204 FGASQFVRVLPHCQHTFHARCIDNWLFRHASCPLCRAGVHIDHIHM 249
>Os10g0544600 Fibrillarin family protein
Length = 233
Score = 201 bits (511), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 96/192 (50%), Positives = 127/192 (66%), Gaps = 1/192 (0%)
Query: 49 VCALLTCVFAVVGSLVGVFIGAFMGMSTESGMLRXXXXXXXXXXXFSIEAVESCIEIWRS 108
+CA+ TCVFA VGS+VG G+ +G++TESGMLR FSIE ES ++W S
Sbjct: 39 LCAVATCVFAAVGSVVGAVTGSAIGLATESGMLRGAGIGAISGAVFSIEVAESSRDLWHS 98
Query: 109 SESGKYSIIFVLDIISSLFSGRIVWEKVSPALQRAVQSQMSLLSTPFIDNNDLFETGNTG 168
S+S + +++++DIISSL SGR+V EKV PA+Q AVQSQ+S +S+PF + +DLFETG T
Sbjct: 99 SDSAVWCLVYMVDIISSLLSGRLVREKVGPAVQSAVQSQISAISSPFAETSDLFETGGTK 158
Query: 169 GMSRDLINRIPKTTFSAATNPDQETDN-CCAVCLQDFGASQFVRVLPHCQHTFHARCIDN 227
G+ D + R+P + D + CC+VCLQDF + R LP C+H FH CID
Sbjct: 159 GLPADTLRRLPAIKITGDNAVDSAGEPICCSVCLQDFRVGEMARRLPSCRHVFHVPCIDC 218
Query: 228 WLFRHASCPLCR 239
WL RH SCPLCR
Sbjct: 219 WLVRHGSCPLCR 230
>Os06g0717600 Zinc finger, RING-type domain containing protein
Length = 232
Score = 171 bits (434), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 85/191 (44%), Positives = 118/191 (61%), Gaps = 2/191 (1%)
Query: 51 ALLTCVFAVVGSLVGVFIGAFMGMSTESGMLRXXXXXXXXXXXFSIEAVESCIEIWRSSE 110
++T +FA+ G +G G +G++TESG+ R SIE V+S I +WRS
Sbjct: 39 GVITFIFAIAGLFLGAVTGGLIGLATESGLFRGTGIGAITGALVSIEVVDSSIRVWRSRR 98
Query: 111 SGKYSIIFVLDIISSLFSGRIVWEKVSPALQRAVQSQMSLL-STPFIDNNDLFETGNTGG 169
SG SI +VL++I SL +GR+V EKV PA+QR V+SQM+ + S+PF ++ DLFE T G
Sbjct: 99 SGISSICYVLNVIYSLLTGRLVREKVDPAVQRVVRSQMNAVDSSPFRESPDLFEIEGTNG 158
Query: 170 MSRDLINRIPKTTFSAATNPDQETD-NCCAVCLQDFGASQFVRVLPHCQHTFHARCIDNW 228
M R I+++P+ + + D + C+VCLQDF + VR LP C H FH CID W
Sbjct: 159 MPRASIDKLPEVRITEEYRRNAIGDLSGCSVCLQDFQTGEKVRSLPDCWHVFHVPCIDGW 218
Query: 229 LFRHASCPLCR 239
L +H SCPLCR
Sbjct: 219 LIKHGSCPLCR 229
>Os08g0550400 Similar to RING-H2 finger protein ATL5P
Length = 260
Score = 166 bits (421), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 88/198 (44%), Positives = 123/198 (62%), Gaps = 12/198 (6%)
Query: 52 LLTCVFAVVGSLVGVFIGAFMGMSTESGMLRXXXXXXXXXXXFSIEAVESCIEIWRSSES 111
++T VFA VG+++G G +G++TESGM+R ++E V+S + +W S +S
Sbjct: 49 IVTFVFATVGTILGAITGGLIGLATESGMVRGTGIGAISGAVVAMEVVDSSVAMWCSHDS 108
Query: 112 GKYSIIFVLDIISSLFSGRIVWEKVSPALQRAVQSQMSLLSTPFIDN----NDLFETGNT 167
G +S+++VLD+I SL +GR+V EKV PA+Q AV SQM+ PF ++ ++F+TG
Sbjct: 109 GIWSVLYVLDVIWSLLTGRLVREKVDPAVQNAVDSQMNAADAPFRESAPTLAEMFDTGIP 168
Query: 168 G------GMSRDLINRIPKTTFSAATNPDQETDNCCAVCLQDFGASQFVRVLPHCQHTFH 221
G GM D I +P TTF+AA + C+VCLQD + R LP C HTFH
Sbjct: 169 GVAAAATGMPADAIAALPVTTFAAAAG--GDDRAGCSVCLQDLEDGERARRLPECGHTFH 226
Query: 222 ARCIDNWLFRHASCPLCR 239
RCID+WL RHASCPLCR
Sbjct: 227 LRCIDSWLLRHASCPLCR 244
>Os02g0743700 Similar to RING-H2 finger protein ATL1Q
Length = 220
Score = 121 bits (304), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 63/191 (32%), Positives = 95/191 (49%)
Query: 49 VCALLTCVFAVVGSLVGVFIGAFMGMSTESGMLRXXXXXXXXXXXFSIEAVESCIEIWRS 108
+ LT +FA+ G+L G GA G +++SG+LR SIE +E+ W S
Sbjct: 27 ISGALTGLFALAGALTGAVTGALAGRASDSGVLRGAGLGAFAGAVLSIEVLEASRAYWCS 86
Query: 109 SESGKYSIIFVLDIISSLFSGRIVWEKVSPALQRAVQSQMSLLSTPFIDNNDLFETGNTG 168
G + + D I L R V E++ P+ + Q+S+ D D+F ++
Sbjct: 87 DRLGSHGTSSMADFIEQLLQARFVQEQIVPSGYATHRWQVSISDFGHDDLYDIFGDCSSK 146
Query: 169 GMSRDLINRIPKTTFSAATNPDQETDNCCAVCLQDFGASQFVRVLPHCQHTFHARCIDNW 228
G+SR+ +N++P + T D C +CLQD + R LP+C HTFH C+D W
Sbjct: 147 GLSRESLNKLPHYVVTDQTRNSFGEDLSCTICLQDIVTGETARRLPNCSHTFHQPCVDKW 206
Query: 229 LFRHASCPLCR 239
L H SCP+CR
Sbjct: 207 LVGHGSCPVCR 217
>Os06g0231600 Zinc finger, RING-type domain containing protein
Length = 222
Score = 96.3 bits (238), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 61/193 (31%), Positives = 87/193 (45%), Gaps = 7/193 (3%)
Query: 49 VCALLTCVFAVVGSLVGVFIGAFMGMSTESGMLRXXXXXXXXXXXFSIEAVESCIEIW-- 106
V +LT +FAV G L G GA G +++ G+LR SIE +E+ W
Sbjct: 32 VSGMLTGIFAVAGGLTGAVTGALAGRASDGGVLRGAGLGTFAGAVLSIEILEASRAYWCQ 91
Query: 107 -RSSESGKYSIIFVLDIISSLFSGRIVWEKVSPALQRAVQSQMSLLSTPFIDNNDLFETG 165
RSS G S+ D + L R V E+ + + Q+ + +++
Sbjct: 92 DRSSSPGSLSM---GDFVKQLIHARFVQEQNEASGHITYRWQVGIADVVNGAVHEILGDV 148
Query: 166 NTG-GMSRDLINRIPKTTFSAATNPDQETDNCCAVCLQDFGASQFVRVLPHCQHTFHARC 224
+G G+S+ + ++P N C VCLQD A Q VR LP C HTFH C
Sbjct: 149 PSGEGLSKYSLMKLPYHVVIDHNNGSIGESLSCPVCLQDVVAGQTVRRLPKCSHTFHQPC 208
Query: 225 IDNWLFRHASCPL 237
+D WL H SCP+
Sbjct: 209 VDKWLVGHGSCPM 221
>Os09g0542600 Similar to RING-H2 finger protein ATL1I
Length = 217
Score = 88.6 bits (218), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 65/207 (31%), Positives = 92/207 (44%), Gaps = 23/207 (11%)
Query: 52 LLTCVFAV---VGSLVGVFIGAFMGMSTESGMLRXXXXXXXXXXXFSIEAVESCIEIWRS 108
L TCVFA G ++G G G +E G+L+ ++E V+S +IW
Sbjct: 19 LATCVFATGVQAGMMLGAIAGVIAGFVSEDGLLQGTLIGAISGAFIAMEVVDSLAKIWCY 78
Query: 109 SESGKYSII----FVLDIISSLFSGRI-VWEKVSPALQRAVQSQMSLLSTPFIDNNDLFE 163
E YSI +L + +L R+ V V P L + SQ++ + P
Sbjct: 79 EE---YSIATRAHLMLLVFWNLVIDRLTVRTSVFPTLTTVLDSQLN--AVPSRHRRAEVS 133
Query: 164 TGNTG-------GMSRDLINRIPKTTFSAATNPDQETDNCCAVCLQDFGASQFVRVLPHC 216
TG GM ++++P +AA + C +CL DF A + R LP C
Sbjct: 134 GDLTGRSYPVVMGMRLAAVDQLPVIKLTAA---QTDATGACPICLHDFKAGEIARRLPAC 190
Query: 217 QHTFHARCIDNWLFRHASCPLCRAGVH 243
H FH CIDNWL HA CP+CR V+
Sbjct: 191 CHIFHLGCIDNWLLWHALCPMCRRPVN 217
>Os02g0832150 Zinc finger, RING-type domain containing protein
Length = 217
Score = 72.0 bits (175), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 169 GMSRDLINRIPKTTFSAATNPDQETDNCCAVCLQDFGASQFVRVLPHCQHTFHARCIDNW 228
G+ + I+ +P +F+ Q+ CA+CL +F + +R+LPHC H FH CID W
Sbjct: 107 GLKKKAIDALPTVSFALK---QQQQQAECAICLAEFAGGEELRLLPHCGHAFHVSCIDTW 163
Query: 229 LFRHASCPLCRAGV 242
L HA+CP CRA V
Sbjct: 164 LGTHATCPSCRATV 177
>Os12g0115600
Length = 170
Score = 71.6 bits (174), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 40/74 (54%), Gaps = 6/74 (8%)
Query: 168 GGMSRDLINRIPKTTFSA--ATNPDQETDNCCAVCLQDFGASQFVRVLPHCQHTFHARCI 225
GG+ + + RI + A A PD E CA+CL DF VRVLP C H FH CI
Sbjct: 86 GGLKKKELRRITVEVYGAKQAGVPDAE----CAICLGDFADGDKVRVLPRCHHGFHVGCI 141
Query: 226 DNWLFRHASCPLCR 239
D WL H SCP CR
Sbjct: 142 DTWLAAHTSCPTCR 155
>Os02g0541500
Length = 202
Score = 71.2 bits (173), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 44/85 (51%), Gaps = 6/85 (7%)
Query: 157 DNNDLFETG--NTGGMSRDLINRIPKTTFSAATNPDQETDNCCAVCLQDFGASQFVRVLP 214
D+ +L + G+ R + +P +SAA P CA+CL D + VRVLP
Sbjct: 95 DDGELGPSAAAQAAGVRRKALRAMPTMVYSAAGGPSPA----CAICLADLEPGERVRVLP 150
Query: 215 HCQHTFHARCIDNWLFRHASCPLCR 239
C H FH RC+D WL ++CP CR
Sbjct: 151 KCNHGFHVRCVDRWLLARSTCPTCR 175
>Os02g0686100 Similar to RING-H2 finger protein ATL1B
Length = 189
Score = 70.1 bits (170), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 43/71 (60%), Gaps = 2/71 (2%)
Query: 169 GMSRDLINRIPKTTFSAATNPDQETDNCCAVCLQDFGASQFVRVLPHCQHTFHARCIDNW 228
G+ ++++ +P T+ + + + CA+CL +F Q VRVLP C H FHA CID W
Sbjct: 74 GVKKEVLRSLPTVTYVSDGGGGEAEE--CAICLVEFEDGQAVRVLPQCDHRFHAACIDTW 131
Query: 229 LFRHASCPLCR 239
L H+SCP CR
Sbjct: 132 LRAHSSCPSCR 142
>Os03g0149800 Similar to RING-H2 finger protein ATL1D
Length = 300
Score = 69.3 bits (168), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 43/78 (55%)
Query: 162 FETGNTGGMSRDLINRIPKTTFSAATNPDQETDNCCAVCLQDFGASQFVRVLPHCQHTFH 221
+E GG+ D++ +P + A + + CAVCL +F + +++LP C H FH
Sbjct: 87 YEAEVGGGLDPDVVAALPVVKYRRAASGKSASPQECAVCLSEFVRDERLKLLPSCSHAFH 146
Query: 222 ARCIDNWLFRHASCPLCR 239
CID WL + SCPLCR
Sbjct: 147 IDCIDTWLHHNVSCPLCR 164
>Os02g0688800 Zinc finger, RING-type domain containing protein
Length = 373
Score = 68.6 bits (166), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 43/76 (56%)
Query: 174 LINRIPKTTFSAATNPDQETDNCCAVCLQDFGASQFVRVLPHCQHTFHARCIDNWLFRHA 233
LI +P T ++A ++ CAVCL F +R+LP C+H FHA C+D WL
Sbjct: 126 LIASLPLFTMASALAALPKSSPDCAVCLSPFAPEAELRLLPACRHAFHASCVDAWLRTTP 185
Query: 234 SCPLCRAGVHIDHIHM 249
SCPLCRA V + H +
Sbjct: 186 SCPLCRATVSLPHPPL 201
>Os04g0590900 Similar to RING-H2 finger protein ATL1B
Length = 383
Score = 68.2 bits (165), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 43/74 (58%), Gaps = 2/74 (2%)
Query: 169 GMSRDLINRIPKTTFSAATNPDQETDNCCAVCLQDFGASQFVRVLPHCQHTFHARCIDNW 228
G+ LIN+I + TD C+VCL +F + +R+LP C H FH +CID W
Sbjct: 131 GLDETLINKITVCKYRRGDGFVHTTD--CSVCLGEFSDGESLRLLPRCSHAFHQQCIDTW 188
Query: 229 LFRHASCPLCRAGV 242
L H++CPLCRA +
Sbjct: 189 LKSHSNCPLCRANI 202
>Os01g0212700 Zinc finger, RING-type domain containing protein
Length = 185
Score = 68.2 bits (165), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 34/78 (43%), Positives = 43/78 (55%), Gaps = 2/78 (2%)
Query: 166 NTGGMSRDLINRIPKTTFSAATNPDQETDNCCAVCLQDFGASQFVRVLPHCQHTFHARCI 225
N+ GMS I +P + A+ D CAVCL A + VR LP C H FHA C+
Sbjct: 70 NSHGMSAAAIAALPTFGYEASAAAAAALD--CAVCLGQVDAGEKVRQLPKCGHLFHAECV 127
Query: 226 DNWLFRHASCPLCRAGVH 243
D WL H++CP+CRA V
Sbjct: 128 DAWLRAHSTCPMCRAAVE 145
>Os06g0666500 Zinc finger, RING-type domain containing protein
Length = 181
Score = 68.2 bits (165), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 40/72 (55%), Gaps = 3/72 (4%)
Query: 168 GGMSRDLINRIPKTTFSAATNPDQETDNCCAVCLQDFGASQFVRVLPHCQHTFHARCIDN 227
G+ R+ + +P T+ A+ P CA+CL DF + VR+LP C H FH CID
Sbjct: 85 AGLKREDVVALPVATYVASPAPSVAG---CAICLSDFADGERVRLLPACGHRFHVVCIDR 141
Query: 228 WLFRHASCPLCR 239
WL H SCP CR
Sbjct: 142 WLLAHCSCPTCR 153
>Os05g0596500 Similar to RING-H2 finger protein ATL3I (YGHL1-C3HC4 RING fusion
protein)
Length = 385
Score = 67.8 bits (164), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 45/77 (58%), Gaps = 2/77 (2%)
Query: 169 GMSRDLINRIPKTTFSAATNPDQETDNCCAVCLQDFGASQFVRVLPHCQHTFHARCIDNW 228
G+++ +I +P F+A Q + CAVCL F + +R+LP C+H FH C+D W
Sbjct: 98 GVAKPVIESLPFFRFAALRGARQGLE--CAVCLARFDDADLLRLLPRCRHAFHLDCVDRW 155
Query: 229 LFRHASCPLCRAGVHID 245
L ASCPLCRA V +
Sbjct: 156 LESKASCPLCRARVDAE 172
>Os06g0695900 Zinc finger, RING-type domain containing protein
Length = 398
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 46/79 (58%), Gaps = 2/79 (2%)
Query: 169 GMSRDLINRIPKTTFSAATNPDQETDNCCAVCLQDFGASQFVRVLPHCQHTFHARCIDNW 228
G+ R ++ +P F A Q+ CAVCL F ++ +R+LP C+H FH C+D W
Sbjct: 91 GVDRAVVESLPVFRFGALRG--QKAGLECAVCLGRFEPTEALRLLPKCRHGFHVECVDTW 148
Query: 229 LFRHASCPLCRAGVHIDHI 247
L H++CPLCR+ V + +
Sbjct: 149 LDAHSTCPLCRSRVDPEDV 167
>Os04g0586700 Zinc finger, RING-type domain containing protein
Length = 359
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 44/79 (55%)
Query: 168 GGMSRDLINRIPKTTFSAATNPDQETDNCCAVCLQDFGASQFVRVLPHCQHTFHARCIDN 227
G + LI +P T +++ ++ CAVCL F +R+LP C+H FHA C+D
Sbjct: 99 GDEKQRLIESLPLFTMASSLAALPKSSPDCAVCLSPFTLDAELRLLPACRHAFHAACVDA 158
Query: 228 WLFRHASCPLCRAGVHIDH 246
WL SCPLCRA V + H
Sbjct: 159 WLRTTPSCPLCRATVTLPH 177
>Os01g0736600 Zinc finger, RING-type domain containing protein
Length = 197
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 48/89 (53%), Gaps = 7/89 (7%)
Query: 157 DNNDLFETGNTG-----GMSRDLINRIPKTTFSAATNPDQETDNCCAVCLQDFGASQFVR 211
++ D + +G G+ I PK F + D D C++CL ++ + +R
Sbjct: 79 ESPDAYSSGVAAASSPVGLDPAAIASYPKVPFYSGAGAD--ADAMCSICLSEYADGEMLR 136
Query: 212 VLPHCQHTFHARCIDNWLFRHASCPLCRA 240
V+P C+H FH C+D WL R+ASCP+CR+
Sbjct: 137 VMPDCRHRFHVCCLDAWLRRNASCPVCRS 165
>Os05g0478000 Zinc finger, RING-type domain containing protein
Length = 189
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 28/48 (58%), Positives = 33/48 (68%), Gaps = 1/48 (2%)
Query: 192 ETDNCCAVCLQDFGASQFVRVLPHCQHTFHARCIDNWLFRHASCPLCR 239
ETD CA+CL +F + VRVLP C+H FH RC+D WL H SCP CR
Sbjct: 120 ETD-VCAICLGEFADGEKVRVLPRCRHGFHVRCVDAWLVSHGSCPTCR 166
>AK064102
Length = 357
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 27/46 (58%), Positives = 32/46 (69%)
Query: 197 CAVCLQDFGASQFVRVLPHCQHTFHARCIDNWLFRHASCPLCRAGV 242
CAVCL +F + VR+LP C H FHA CID WL H +CPLCR+ V
Sbjct: 157 CAVCLGEFRDGELVRLLPRCSHPFHAPCIDTWLRAHVNCPLCRSPV 202
>Os08g0445000 Similar to RING-H2 finger protein ATL5A
Length = 501
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 43/80 (53%)
Query: 166 NTGGMSRDLINRIPKTTFSAATNPDQETDNCCAVCLQDFGASQFVRVLPHCQHTFHARCI 225
+ G+ + I+ +P + A ++ CAVCL +F +R+LP C H FH CI
Sbjct: 122 HDAGVDQSFIDTLPVFLYGAVVGAGRKDPFDCAVCLCEFADDDRLRLLPKCSHAFHVDCI 181
Query: 226 DNWLFRHASCPLCRAGVHID 245
D WL H++CPLCR + D
Sbjct: 182 DTWLLSHSTCPLCRRSLLAD 201
>Os02g0820200 Zinc finger, RING-type domain containing protein
Length = 320
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 40/74 (54%)
Query: 169 GMSRDLINRIPKTTFSAATNPDQETDNCCAVCLQDFGASQFVRVLPHCQHTFHARCIDNW 228
G+ I +P + A + CAVC+ +F + VR+LP C H FH CID W
Sbjct: 114 GLEEAAIQSLPAFRYRKAIKDTTADSSECAVCISEFQEEERVRLLPSCLHVFHVDCIDTW 173
Query: 229 LFRHASCPLCRAGV 242
L +A+CPLCRA +
Sbjct: 174 LQGNANCPLCRAAI 187
>Os02g0692000 Similar to RING finger family protein
Length = 389
Score = 65.9 bits (159), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 41/74 (55%), Gaps = 2/74 (2%)
Query: 169 GMSRDLINRIPKTTFSAATNPDQETDNCCAVCLQDFGASQFVRVLPHCQHTFHARCIDNW 228
GM LIN+I + TD C+VCL +F + +R+LP C H FH CID W
Sbjct: 138 GMDETLINKITVCKYRRGDGFVDSTD--CSVCLGEFREGESLRLLPKCSHAFHVPCIDTW 195
Query: 229 LFRHASCPLCRAGV 242
L H++CPLCR +
Sbjct: 196 LKSHSNCPLCRCNI 209
>Os02g0729900 Zinc finger, RING-type domain containing protein
Length = 145
Score = 65.5 bits (158), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 52/98 (53%), Gaps = 11/98 (11%)
Query: 145 QSQMSLLSTPFIDNNDLFETGNTGGMSRDLINRIPKTTFSAATNPDQETDNCCAVCLQDF 204
+S+++L + +D+ GG+S + + +P +E CAVCL+ F
Sbjct: 35 RSRLALARARVVGQHDV----ARGGLSAEQVGELPCHVV-------KEGAGECAVCLEAF 83
Query: 205 GASQFVRVLPHCQHTFHARCIDNWLFRHASCPLCRAGV 242
A RVLP C+H FHA+C+D+WL CP+CRA V
Sbjct: 84 RAGDRRRVLPRCEHGFHAQCVDSWLRVSRLCPICRAEV 121
>Os11g0610600 Similar to RING-H2 finger protein ATL2N
Length = 405
Score = 65.5 bits (158), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 27/48 (56%), Positives = 33/48 (68%)
Query: 197 CAVCLQDFGASQFVRVLPHCQHTFHARCIDNWLFRHASCPLCRAGVHI 244
CAVCL +F + +R+LP C+H FH CID WL H +CPLCRA V I
Sbjct: 222 CAVCLTEFRDGETLRLLPRCRHAFHRGCIDTWLRAHVNCPLCRAPVQI 269
>Os04g0419500 Zinc finger, RING-type domain containing protein
Length = 202
Score = 65.5 bits (158), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Query: 169 GMSRDLINRIPKTTFSAATNPDQETDNCCAVCLQDFGASQFVRVLPHCQHTFHARCIDNW 228
G+ R + +P +S + CA+CL DF + VRVLP C H FH RCID W
Sbjct: 89 GLRRKALRSMPILLYSTGLKLNT-VSPMCAICLSDFEDGEHVRVLPKCNHGFHVRCIDRW 147
Query: 229 LFRHASCPLCR 239
L ++CP CR
Sbjct: 148 LLARSTCPTCR 158
>Os06g0192800 Similar to RING-H2 finger protein ATL1R (RING-H2 finger protein
ATL8)
Length = 321
Score = 65.5 bits (158), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 39/77 (50%)
Query: 169 GMSRDLINRIPKTTFSAATNPDQETDNCCAVCLQDFGASQFVRVLPHCQHTFHARCIDNW 228
G+ + +P T ++ E CAVCL + + VR+LP C H FH CID W
Sbjct: 84 GLPAAALRALPVTVYAKPAAARGEEALECAVCLSEVADGEKVRMLPKCDHGFHVECIDMW 143
Query: 229 LFRHASCPLCRAGVHID 245
H +CPLCRA V D
Sbjct: 144 FHSHDTCPLCRAPVGPD 160
>Os01g0822800 Similar to RING-H2 finger protein ATL3C
Length = 208
Score = 65.5 bits (158), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 26/46 (56%), Positives = 30/46 (65%)
Query: 197 CAVCLQDFGASQFVRVLPHCQHTFHARCIDNWLFRHASCPLCRAGV 242
CA+CL +F + VRVLP C H FH RC+D WL H SCP CR V
Sbjct: 124 CAICLGEFADGEKVRVLPRCGHGFHVRCVDTWLVSHDSCPTCRGSV 169
>Os12g0596200 Similar to RING-H2 protein
Length = 310
Score = 65.1 bits (157), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 29/48 (60%), Positives = 32/48 (66%)
Query: 197 CAVCLQDFGASQFVRVLPHCQHTFHARCIDNWLFRHASCPLCRAGVHI 244
CAVCL +F +R LP C H FHA CID WL HASCPLCRA V +
Sbjct: 104 CAVCLLEFADGDELRALPLCAHAFHADCIDVWLRAHASCPLCRAAVAL 151
>Os08g0484200 Zinc finger, RING-type domain containing protein
Length = 413
Score = 64.7 bits (156), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 26/49 (53%), Positives = 33/49 (67%)
Query: 197 CAVCLQDFGASQFVRVLPHCQHTFHARCIDNWLFRHASCPLCRAGVHID 245
CAVCL +F + +R+LP C H FHA CID WL H +CP+CRA + D
Sbjct: 145 CAVCLSEFDDDETLRLLPRCSHAFHADCIDAWLASHVTCPVCRANLAFD 193
>Os11g0703300
Length = 170
Score = 64.7 bits (156), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 35/67 (52%)
Query: 179 PKTTFSAATNPDQETDNCCAVCLQDFGASQFVRVLPHCQHTFHARCIDNWLFRHASCPLC 238
P S D + C VCL +F + +R+LP C H FHA CID WL A+CPLC
Sbjct: 100 PPPCTSTYRRDDGWKETACPVCLSEFADGELIRLLPECMHYFHAACIDEWLRTRATCPLC 159
Query: 239 RAGVHID 245
RA D
Sbjct: 160 RAAPAGD 166
>Os01g0755700 Zinc finger, RING-type domain containing protein
Length = 238
Score = 64.7 bits (156), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 38/76 (50%), Gaps = 1/76 (1%)
Query: 169 GMSRDLINRIPKTTFSAATNPDQETDNC-CAVCLQDFGASQFVRVLPHCQHTFHARCIDN 227
G+ I +P + D CA+CL + VRVLP C+H FH CID
Sbjct: 88 GLDPSAIAALPTAAYGKVAGGDAAGGTTECAICLGAMQEADAVRVLPACRHVFHVACIDK 147
Query: 228 WLFRHASCPLCRAGVH 243
WL +SCP+CRAGV
Sbjct: 148 WLASSSSCPVCRAGVE 163
>Os04g0450400 Zinc finger, RING-type domain containing protein
Length = 415
Score = 64.7 bits (156), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 41/76 (53%), Gaps = 2/76 (2%)
Query: 167 TGGMSRDLINRIPKTTFSAATNPDQETDNCCAVCLQDFGASQFVRVLPHCQHTFHARCID 226
T G+ I+ I T + A D C+VCL +F + VR+LP C H FH CID
Sbjct: 174 TVGLDEAAIDSIAATRYRAGAGLLGAAD--CSVCLGEFQDGELVRLLPKCGHAFHVPCID 231
Query: 227 NWLFRHASCPLCRAGV 242
WL H +CPLCR+ V
Sbjct: 232 TWLRAHVNCPLCRSDV 247
>Os06g0187300
Length = 444
Score = 64.3 bits (155), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 41/76 (53%), Gaps = 2/76 (2%)
Query: 169 GMSRDLINRIPKTTFSAATNPDQETDNC--CAVCLQDFGASQFVRVLPHCQHTFHARCID 226
G+ + I+ +P + A D+ CAVCL +F +R+LP C H FH CID
Sbjct: 93 GVDQTFIDALPVFVYRAVVGAGLRKDDPFDCAVCLCEFAGDDKLRLLPTCGHAFHVPCID 152
Query: 227 NWLFRHASCPLCRAGV 242
WL H++CP+CR V
Sbjct: 153 AWLLSHSTCPICRGSV 168
>Os12g0433100 Zinc finger, RING-type domain containing protein
Length = 212
Score = 63.9 bits (154), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
Query: 173 DLINRIPKTTFSAATNPDQETDNCCAVCLQDFGASQFVRVLPHCQHTFHARCIDNWLFRH 232
D+ IP +S + E + C AVC+ + VR LP C H FHA CID WL H
Sbjct: 132 DVEAAIPAFEYSKGSGGAAEAEQC-AVCIGVVRRGETVRRLPACGHAFHAACIDGWLRAH 190
Query: 233 ASCPLCRAGVHI 244
A+CP+CRA V +
Sbjct: 191 ATCPVCRADVKV 202
>Os05g0359500 Similar to RING-H2 finger protein ATL5C precursor
Length = 223
Score = 63.9 bits (154), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 25/46 (54%), Positives = 33/46 (71%)
Query: 197 CAVCLQDFGASQFVRVLPHCQHTFHARCIDNWLFRHASCPLCRAGV 242
CA+C+ +F + R+LP C H FHARC+D W H++CPLCRAGV
Sbjct: 136 CAICIAEFADGEEGRLLPRCGHRFHARCVDMWFQLHSTCPLCRAGV 181
>Os02g0790600 Similar to RING-H2 finger protein ATL1R (RING-H2 finger protein
ATL8)
Length = 428
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 30/43 (69%)
Query: 197 CAVCLQDFGASQFVRVLPHCQHTFHARCIDNWLFRHASCPLCR 239
CAVCL +F A +R+LP C H FH CID WL H++CPLCR
Sbjct: 123 CAVCLCEFAADDQLRLLPKCSHAFHLECIDTWLLSHSTCPLCR 165
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.328 0.138 0.456
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,914,013
Number of extensions: 251801
Number of successful extensions: 1022
Number of sequences better than 1.0e-10: 65
Number of HSP's gapped: 1058
Number of HSP's successfully gapped: 65
Length of query: 249
Length of database: 17,035,801
Length adjustment: 98
Effective length of query: 151
Effective length of database: 11,918,829
Effective search space: 1799743179
Effective search space used: 1799743179
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 155 (64.3 bits)