FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0820200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Zinc finger, RING-type domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.34 (0.0208) R2 : 0.000242
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0146 (0.0438) R2dN8 : 0.000313 R2N8 : 0.000242
σ : 0.392
deviance : 70.48
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
63.82 0.375 3.22 1.26 0.224 -0.731 0.14 5.69 0.0189 8.6 29.57 1487 -- --
65.13 0.376 3.32 0.31 0.232 -0.162 0.186 -- 0.0662 8.56 16.77 7698 -- --
63.87 0.372 3.21 1.27 0.227 -0.735 -- 5.7 0.0236 8.34 29.5 1486 -- --
65.14 0.376 3.32 0.337 0.239 -0.188 -- -- 0.0687 8.29 15.52 8735 -- --
66.69 0.38 3.22 1.28 -- -0.742 -- 5.75 0.0254 -- 29.51 1486 -- --
65.76 0.38 3.33 0.228 0.239 -- 0.151 -- 0.00924 8.64 -- -- -- --
65.82 0.38 3.33 0.232 0.24 -- -- -- 0.00884 8.38 -- -- -- --
68.21 0.385 3.32 0.346 -- -0.206 -- -- 0.0746 -- 15.7 7908 -- --
66.79 0.381 3.34 -- 0.245 0.124 -- -- -0.0542 8.38 15.37 19692 -- --
69.04 0.388 3.34 0.233 -- -- -- -- 0.0113 -- -- -- -- --
67.24 0.384 3.34 -- 0.241 -- -- -- -0.017 8.31 -- -- -- --
69.88 0.389 3.35 -- -- 0.119 -- -- -0.0531 -- 15.9 47520 -- --
70.48 0.392 3.34 -- -- -- -- -- -0.0146 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 55.40 wind 1.0 10 < th dose dependent rect. 9 1
3 55.84 wind 1.0 10 < th dose independent rect. 9 1
7 56.38 radiation 10.0 10 < th dose independent rect. 9 1
15 56.52 radiation 10.0 10 < th dose dependent rect. 10 1
62 60.98 atmosphere 1005.0 10 > th dose dependent rect. 2 2
67 61.16 radiation 10.0 30 > th dose independent rect. 7 1
71 61.31 humidity 80.0 10 < th dose independent rect. 7 1
77 61.40 humidity 80.0 10 < th dose independent rect. 23 9
78 61.42 atmosphere 1000.0 30 > th dose independent rect. 3 23
118 61.88 humidity 90.0 90 < th dose independent rect. 1 7
121 61.94 temperature 25.0 90 > th dose independent rect. 8 2
125 62.09 humidity 90.0 90 < th dose independent rect. 2 3
127 62.12 temperature 25.0 90 > th dose independent rect. 1 1
133 62.14 radiation 10.0 10 > th dose independent rect. 16 16
136 62.18 wind 3.0 90 < th dose independent rect. 2 1
137 62.18 atmosphere 1005.0 90 > th dose independent rect. 2 1
138 62.18 temperature 25.0 90 > th dose dependent rect. 1 3
139 62.18 humidity 80.0 14400 < th dose dependent rect. 2 7
142 62.20 radiation 1.0 43200 < th dose dependent rect. 3 1
157 62.29 wind 5.0 30 < th dose dependent rect. 2 6
161 62.32 wind 5.0 90 < th dose dependent rect. 2 1
169 62.37 radiation 1.0 4320 < th dose dependent rect. 3 1
175 62.40 radiation 40.0 10 < th dose independent rect. 10 22
178 62.40 humidity 90.0 90 < th dose dependent rect. 2 5
184 62.42 atmosphere 1010.0 30 < th dose dependent rect. 2 1
188 62.43 wind 9.0 1440 < th dose independent rect. 3 1
189 62.43 temperature 10.0 1440 > th dose independent rect. 3 1
192 62.43 temperature 30.0 1440 < th dose independent rect. 3 1
196 62.43 humidity 50.0 1440 > th dose independent rect. 3 1
206 62.43 atmosphere 995.0 1440 > th dose independent rect. 3 1
207 62.43 radiation 1.0 1440 < th dose independent rect. 3 1
228 62.43 temperature 10.0 1440 > th dose independent rect. 4 23
259 62.48 wind 1.0 30 > th dose independent rect. 2 1
261 62.48 temperature 10.0 30 > th dose independent rect. 2 1
264 62.48 temperature 30.0 30 < th dose independent rect. 2 1
265 62.48 humidity 50.0 30 > th dose independent rect. 2 1
268 62.48 atmosphere 995.0 30 > th dose independent rect. 2 1
271 62.48 atmosphere 1010.0 30 < th dose independent rect. 2 1
273 62.48 radiation 1.0 30 < th dose independent rect. 2 1
278 62.48 precipitation 0.1 30 < th dose independent rect. 2 1
282 62.48 temperature 10.0 30 > th dose independent rect. 3 23
287 62.48 humidity 50.0 30 > th dose dependent rect. 2 1
292 62.48 radiation 1.0 30 < th dose dependent rect. 2 1
297 62.48 precipitation 0.1 30 < th dose dependent rect. 2 1
299 62.49 humidity 90.0 30 > th dose independent rect. 2 1
310 62.51 temperature 30.0 30 < th dose dependent rect. 2 1
331 62.57 humidity 70.0 14400 > th dose independent rect. 8 1
332 62.57 atmosphere 995.0 90 > th dose independent rect. 9 23
358 62.59 atmosphere 1000.0 90 > th dose independent rect. 11 21
362 62.59 humidity 80.0 14400 < th dose dependent rect. 7 1
370 62.60 precipitation 0.1 30 < th dose independent rect. 3 23
374 62.60 precipitation 0.1 30 < th dose dependent rect. 3 23
381 62.62 humidity 90.0 720 < th dose independent rect. 24 4
382 62.62 radiation 10.0 10 < th dose independent rect. 9 17
392 62.66 humidity 50.0 30 > th dose independent rect. 8 18
398 62.69 wind 3.0 30 < th dose independent rect. 2 6
445 62.74 humidity 50.0 10 > th dose dependent rect. 9 1
446 62.74 humidity 90.0 90 < th dose dependent rect. 1 7
449 62.75 atmosphere 1000.0 10 > th dose independent rect. 16 10
451 62.75 atmosphere 1000.0 10 > th dose independent rect. 8 23
454 62.76 temperature 10.0 30 > th dose dependent rect. 2 6
455 62.77 humidity 90.0 30 < th dose independent rect. 9 1
469 62.77 humidity 80.0 10 > th dose dependent rect. 10 1
475 62.78 humidity 90.0 90 < th dose independent rect. 1 20
476 62.79 humidity 70.0 14400 < th dose independent rect. 8 1
477 62.79 humidity 70.0 14400 > th dose independent rect. 4 5
479 62.79 humidity 70.0 14400 > th dose independent rect. 1 8
484 62.79 radiation 1.0 30 > th dose independent rect. 8 23
488 62.80 humidity 70.0 14400 > th dose independent rect. 6 3
494 62.80 atmosphere 995.0 30 > th dose dependent rect. 2 6
499 62.82 precipitation 0.1 14400 > th dose dependent rect. 24 9
502 62.83 precipitation 0.1 14400 > th dose independent rect. 24 9
515 62.85 temperature 30.0 4320 < th dose independent rect. 3 6
524 62.87 precipitation 0.1 14400 < th dose independent rect. 1 10
527 62.87 precipitation 0.1 14400 < th dose dependent rect. 1 10
548 62.90 wind 9.0 30 < th dose independent rect. 3 23
549 62.90 humidity 50.0 30 > th dose independent rect. 3 23
552 62.90 humidity 90.0 90 < th dose dependent rect. 2 1
570 62.93 atmosphere 1000.0 30 > th dose independent rect. 8 18
576 62.93 radiation 20.0 10 < th dose dependent rect. 9 17
590 62.95 atmosphere 1005.0 30 > th dose independent rect. 2 6
614 62.98 precipitation 0.1 14400 < th dose independent rect. 1 13
618 62.98 precipitation 0.1 14400 < th dose dependent rect. 1 13
633 63.00 humidity 90.0 90 < th dose dependent rect. 2 3
637 63.01 wind 9.0 1440 < th dose independent rect. 3 6
638 63.01 temperature 10.0 1440 > th dose independent rect. 3 6
641 63.01 humidity 50.0 1440 > th dose independent rect. 3 6
643 63.01 atmosphere 995.0 1440 > th dose independent rect. 3 6
647 63.01 wind 9.0 30 < th dose independent rect. 8 18
648 63.01 temperature 10.0 1440 > th dose independent rect. 9 18
653 63.01 atmosphere 995.0 10 > th dose independent rect. 21 23
674 63.04 temperature 10.0 30 > th dose independent rect. 2 6
676 63.04 temperature 30.0 30 < th dose independent rect. 2 6
677 63.04 humidity 50.0 30 > th dose independent rect. 2 6
680 63.04 atmosphere 1015.0 30 < th dose independent rect. 2 6
681 63.04 precipitation 0.1 30 < th dose independent rect. 2 6
685 63.04 temperature 10.0 30 > th dose independent rect. 8 18
690 63.04 precipitation 0.1 30 < th dose dependent rect. 2 6
711 63.06 humidity 90.0 90 < th dose independent rect. 8 3
718 63.06 humidity 90.0 10 < th dose dependent rect. 3 2
725 63.07 humidity 70.0 14400 < th dose independent rect. 6 3
749 63.08 atmosphere 995.0 720 > th dose independent rect. 23 16
763 63.09 humidity 50.0 90 > th dose dependent rect. 8 3
765 63.10 wind 3.0 14400 > th dose independent rect. 10 1
766 63.10 wind 5.0 14400 < th dose independent rect. 11 1
784 63.11 temperature 30.0 10 < th dose independent rect. 8 18
795 63.12 humidity 80.0 90 < th dose dependent rect. 24 3
825 63.14 precipitation 0.1 30 < th dose independent rect. 8 18
826 63.14 atmosphere 1000.0 270 > th dose independent rect. 10 19
834 63.14 precipitation 0.1 30 < th dose dependent rect. 8 18
840 63.15 atmosphere 1000.0 10 > th dose independent rect. 2 14
853 63.16 wind 5.0 14400 < th dose dependent rect. 10 2
860 63.17 humidity 70.0 270 > th dose independent rect. 6 3
861 63.17 humidity 50.0 90 > th dose independent rect. 8 3
866 63.17 radiation 40.0 30 < th dose independent rect. 2 6
892 63.19 radiation 30.0 10 < th dose independent rect. 16 10
896 63.19 humidity 90.0 10 < th dose dependent rect. 7 1
900 63.20 precipitation 0.1 14400 > th dose independent sin 5 NA
906 63.20 temperature 30.0 270 < th dose independent rect. 9 23
912 63.21 humidity 90.0 90 < th dose independent rect. 1 15
913 63.21 radiation 10.0 720 > th dose independent rect. 17 16
923 63.22 precipitation 0.1 14400 < th dose independent sin 5 NA
925 63.22 wind 5.0 14400 < th dose independent rect. 10 5
931 63.22 precipitation 0.1 14400 < th dose dependent sin 5 NA
935 63.23 temperature 10.0 10 > th dose independent rect. 16 10
938 63.23 temperature 10.0 10 > th dose independent rect. 2 14
940 63.23 atmosphere 1015.0 10 < th dose independent rect. 2 14
943 63.23 wind 9.0 90 < th dose dependent rect. 8 3
946 63.24 temperature 25.0 270 < th dose independent rect. 6 2
949 63.24 humidity 60.0 270 > th dose independent rect. 5 5
951 63.24 precipitation 0.1 10 < th dose independent rect. 2 14
956 63.24 precipitation 0.1 10 < th dose dependent rect. 2 14
958 63.25 temperature 30.0 30 < th dose independent rect. 9 1
960 63.25 radiation 10.0 720 > th dose independent rect. 6 3
969 63.25 humidity 50.0 10 > th dose independent rect. 16 10
973 63.25 radiation 40.0 30 < th dose independent rect. 2 12
987 63.26 humidity 70.0 90 > th dose independent rect. 9 1