FiT-DB / Search/ Help/ Sample detail

Os06g0192800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to RING-H2 finger protein ATL1R (RING-H2 finger protein ATL8).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.22 (0.0435) R2 : 0.489
β1 : 1.01 (0.188) R2dD : 0.0501 R2D : 0.116
β2 : 1.44 (0.1) R2dC : 0.228 R2C : 0.249
β3 : 1.4 (0.185) R2dE : 0.104 R2E : 0.206
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.205 (0.102) R2dN8 : 0.00719 R2N8 : 0.0157
σ : 0.787
deviance : 285.74
__
_____
C
peak time of C : 0.401
E
wheather : temperature
threshold : 20
memory length : 3426
response mode : > th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
286.12 0.795 9.22 1.13 1.39 1.25 0.412 -0.486 0.243 0.409 19.98 2155 -- --
285.54 0.787 9.22 1.02 1.45 1.33 0.458 -- 0.234 0.377 20.07 3433 -- --
286.82 0.789 9.22 1.13 1.39 1.26 -- -0.411 0.245 0.424 19.95 2144 -- --
285.74 0.787 9.22 1.01 1.44 1.4 -- -- 0.205 0.401 20 3426 -- --
390.66 0.921 9.2 1.36 -- 1.36 -- 0.0141 0.208 -- 21.31 846 -- --
320.72 0.84 9.14 1.83 1.46 -- 0.348 -- 0.56 0.352 -- -- -- --
321.24 0.839 9.14 1.82 1.46 -- -- -- 0.558 0.364 -- -- -- --
390.64 0.921 9.19 1.36 -- 1.35 -- -- 0.21 -- 21.32 839 -- --
304.14 0.812 9.22 -- 1.46 1.84 -- -- 0.112 0.497 19.24 11334 -- --
455.53 0.997 9.11 1.87 -- -- -- -- 0.582 -- -- -- -- --
408.33 0.945 9.19 -- 1.49 -- -- -- 0.356 0.427 -- -- -- --
426.35 0.962 9.22 -- -- 1.83 -- -- -0.0204 -- 17.9 47118 -- --
547.48 1.09 9.16 -- -- -- -- -- 0.375 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 281.11 humidity 90.0 14400 > th dose dependent rect. 12 3
7 283.23 wind 9.0 14400 > th dose independent rect. 23 2
9 283.61 wind 9.0 14400 > th dose dependent rect. 23 2
11 284.39 precipitation 0.1 14400 < th dose independent rect. 12 1
12 284.39 precipitation 0.1 14400 < th dose dependent rect. 12 1
14 284.55 temperature 20.0 1440 < th dose independent rect. 22 5
20 285.09 temperature 20.0 1440 > th dose independent rect. 22 6
21 285.09 atmosphere 995.0 43200 < th dose independent rect. 2 8
26 285.16 atmosphere 995.0 43200 < th dose dependent rect. 4 4
28 285.18 temperature 20.0 720 > th dose independent rect. 17 12
29 285.18 atmosphere 995.0 43200 < th dose dependent rect. 1 8
30 285.21 temperature 20.0 1440 > th dose independent rect. 1 1
33 285.26 atmosphere 995.0 43200 > th dose independent rect. 2 8
38 285.33 temperature 20.0 1440 > th dose independent rect. 24 3
41 285.36 atmosphere 995.0 43200 < th dose independent rect. 3 6
42 285.37 atmosphere 995.0 43200 > th dose independent rect. 4 5
47 285.42 temperature 25.0 720 < th dose dependent rect. 21 6
54 285.52 atmosphere 995.0 43200 > th dose independent rect. 5 3
59 285.62 temperature 20.0 4320 > th dose independent rect. 19 2
66 285.76 atmosphere 995.0 43200 < th dose independent rect. 5 3
75 285.86 atmosphere 995.0 43200 < th dose dependent rect. 21 13
86 286.02 atmosphere 995.0 43200 > th dose independent rect. 1 10
90 286.07 humidity 90.0 14400 > th dose independent rect. 12 1
97 286.14 atmosphere 995.0 43200 < th dose dependent sin 9 NA
99 286.15 humidity 70.0 90 > th dose dependent rect. 1 22
102 286.23 humidity 90.0 14400 > th dose independent rect. 14 1
105 286.30 wind 9.0 14400 < th dose independent rect. 23 1
111 286.36 temperature 25.0 720 < th dose dependent rect. 23 2
114 286.43 humidity 90.0 14400 > th dose independent rect. 12 3
116 286.44 atmosphere 995.0 43200 < th dose independent rect. 21 16
129 286.52 temperature 20.0 1440 < th dose independent rect. 22 10
130 286.53 temperature 20.0 1440 > th dose independent rect. 3 1
131 286.53 atmosphere 995.0 43200 < th dose independent rect. 23 13
133 286.54 temperature 20.0 1440 < th dose independent rect. 3 1
137 286.57 atmosphere 995.0 43200 > th dose independent rect. 23 13
143 286.63 atmosphere 995.0 43200 > th dose independent rect. 22 15
144 286.63 atmosphere 995.0 43200 > th dose independent rect. 21 17
147 286.64 atmosphere 995.0 43200 > th dose independent rect. 19 19
158 286.71 temperature 25.0 720 < th dose dependent sin 12 NA
164 286.75 wind 1.0 14400 > th dose independent rect. 24 3
165 286.75 wind 1.0 14400 < th dose independent rect. 23 4
186 286.91 atmosphere 995.0 43200 < th dose independent sin 7 NA
195 287.00 temperature 20.0 1440 > th dose independent rect. 22 10
196 287.01 humidity 90.0 14400 < th dose independent rect. 12 1
202 287.07 temperature 20.0 4320 > th dose independent rect. 17 6
204 287.09 wind 1.0 43200 > th dose independent rect. 22 14
206 287.10 temperature 20.0 720 > th dose independent sin 13 NA
222 287.25 temperature 20.0 720 > th dose independent rect. 11 18
227 287.27 wind 1.0 4320 < th dose dependent rect. 6 1
229 287.29 humidity 90.0 14400 < th dose independent rect. 14 1
233 287.30 temperature 20.0 4320 > th dose independent rect. 6 17
239 287.35 humidity 70.0 90 > th dose dependent rect. 1 19
246 287.38 temperature 15.0 720 > th dose dependent rect. 18 12
287 287.62 temperature 20.0 1440 > th dose independent rect. 6 1
299 287.68 humidity 90.0 14400 < th dose independent rect. 12 3
333 287.89 atmosphere 995.0 43200 > th dose independent sin 7 NA
348 287.94 temperature 30.0 270 < th dose dependent rect. 20 15
364 288.01 temperature 20.0 1440 < th dose independent rect. 6 1
375 288.04 wind 1.0 43200 < th dose independent rect. 21 16
402 288.16 temperature 20.0 720 > th dose independent rect. 17 20
414 288.21 humidity 50.0 14400 > th dose dependent rect. 6 1
416 288.22 precipitation 0.1 14400 > th dose independent rect. 12 1
418 288.22 precipitation 0.1 14400 > th dose dependent rect. 12 1
427 288.27 temperature 20.0 1440 < th dose independent sin 10 NA
432 288.29 temperature 20.0 720 < th dose independent sin 13 NA
448 288.35 temperature 20.0 4320 < th dose independent rect. 6 18
451 288.36 temperature 20.0 720 < th dose independent rect. 15 14
465 288.42 wind 1.0 43200 < th dose dependent rect. 5 7
505 288.57 temperature 20.0 1440 > th dose independent rect. 5 3
520 288.64 wind 1.0 43200 > th dose independent sin 6 NA
537 288.70 humidity 70.0 30 > th dose dependent rect. 3 17
540 288.72 temperature 20.0 720 < th dose independent rect. 15 17
544 288.73 wind 3.0 14400 < th dose dependent rect. 1 1
553 288.75 temperature 20.0 720 < th dose independent rect. 12 20
591 288.85 wind 1.0 43200 > th dose independent rect. 17 19
624 288.92 humidity 70.0 10 > th dose dependent rect. 5 15
626 288.94 temperature 20.0 1440 < th dose independent rect. 5 3
644 289.00 wind 3.0 14400 < th dose dependent rect. 22 4
670 289.09 wind 1.0 43200 < th dose dependent rect. 4 10
683 289.14 wind 1.0 43200 < th dose dependent rect. 22 20
707 289.23 temperature 20.0 4320 > th dose independent sin 20 NA
712 289.23 wind 1.0 43200 < th dose dependent rect. 3 21
717 289.24 wind 1.0 43200 > th dose independent rect. 11 22
741 289.29 wind 3.0 14400 < th dose dependent rect. 23 1
743 289.31 temperature 20.0 4320 < th dose independent rect. 16 8
747 289.32 wind 3.0 14400 < th dose dependent rect. 22 10
759 289.34 humidity 70.0 90 > th dose dependent rect. 11 23
770 289.37 wind 1.0 43200 < th dose dependent rect. 7 2
772 289.38 radiation 40.0 14400 > th dose independent rect. 7 1
790 289.38 radiation 40.0 14400 > th dose dependent rect. 7 1
818 289.42 humidity 80.0 90 > th dose independent rect. 1 19
855 289.51 precipitation 0.1 43200 > th dose independent rect. 24 8
863 289.53 temperature 20.0 4320 < th dose independent rect. 6 5
865 289.53 precipitation 0.1 43200 < th dose independent rect. 24 8
867 289.53 precipitation 0.1 43200 < th dose dependent rect. 24 8
870 289.54 temperature 20.0 4320 > th dose independent rect. 6 5
906 289.61 humidity 90.0 14400 > th dose dependent rect. 5 11
946 289.72 wind 1.0 4320 > th dose independent rect. 5 2
1000 289.83 wind 1.0 43200 > th dose independent rect. 3 9