Os06g0717600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Zinc finger, RING-type domain containing protein.
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Os06g0717600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Zinc finger, RING-type domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 52.84 | 0.342 | 9.89 | 0.425 | 0.219 | -0.882 | -0.117 | 0.625 | 0.528 | 21 | 23.14 | 12 | -- | -- |
| 52.91 | 0.341 | 9.9 | 0.329 | 0.21 | -0.829 | -0.169 | -- | 0.501 | 21.3 | 22.8 | 12 | -- | -- |
| 52.84 | 0.341 | 9.9 | 0.415 | 0.21 | -0.871 | -- | 0.569 | 0.523 | 21.2 | 23.07 | 12 | -- | -- |
| 53.01 | 0.341 | 9.9 | 0.334 | 0.211 | -0.824 | -- | -- | 0.5 | 21.4 | 22.8 | 12 | -- | -- |
| 55.01 | 0.347 | 9.89 | 0.441 | -- | -0.935 | -- | 0.618 | 0.537 | -- | 22.8 | 10 | -- | -- |
| 63.82 | 0.375 | 9.93 | 0.181 | 0.417 | -- | 0.0781 | -- | 0.376 | 0.695 | -- | -- | -- | -- |
| 63.85 | 0.374 | 9.93 | 0.178 | 0.417 | -- | -- | -- | 0.376 | 0.666 | -- | -- | -- | -- |
| 55.29 | 0.348 | 9.9 | 0.348 | -- | -0.894 | -- | -- | 0.509 | -- | 22.8 | 10 | -- | -- |
| 55.78 | 0.35 | 9.92 | -- | 0.225 | -0.728 | -- | -- | 0.447 | 22 | 23.13 | 12 | -- | -- |
| 74.74 | 0.404 | 9.93 | 0.193 | -- | -- | -- | -- | 0.383 | -- | -- | -- | -- | -- |
| 64.68 | 0.376 | 9.94 | -- | 0.42 | -- | -- | -- | 0.356 | 0.686 | -- | -- | -- | -- |
| 58.38 | 0.357 | 9.91 | -- | -- | -0.83 | -- | -- | 0.463 | -- | 22.8 | 10 | -- | -- |
| 75.72 | 0.406 | 9.93 | -- | -- | -- | -- | -- | 0.362 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 47.07 | temperature | 15 | 30 | > th | dose dependent | rect. | 7 | 17 |
| 5 | 47.86 | temperature | 15 | 30 | > th | dose dependent | rect. | 7 | 19 |
| 78 | 50.50 | temperature | 30 | 30 | < th | dose dependent | rect. | 2 | 17 |
| 82 | 50.54 | temperature | 30 | 10 | < th | dose dependent | rect. | 4 | 15 |
| 140 | 51.52 | temperature | 10 | 10 | > th | dose dependent | sin | 2 | NA |
| 154 | 51.64 | temperature | 30 | 10 | < th | dose dependent | sin | 1 | NA |
| 162 | 51.71 | temperature | 30 | 10 | < th | dose dependent | rect. | 24 | 19 |
| 222 | 52.17 | temperature | 25 | 90 | > th | dose dependent | sin | 7 | NA |
| 224 | 52.18 | temperature | 25 | 270 | > th | dose dependent | sin | 9 | NA |
| 228 | 52.21 | temperature | 25 | 270 | > th | dose dependent | rect. | 18 | 17 |
| 243 | 52.26 | temperature | 30 | 90 | < th | dose dependent | rect. | 23 | 22 |
| 253 | 52.33 | temperature | 20 | 270 | > th | dose dependent | rect. | 6 | 5 |
| 312 | 52.59 | radiation | 10 | 43200 | < th | dose dependent | rect. | 20 | 7 |
| 322 | 52.62 | temperature | 20 | 270 | > th | dose dependent | rect. | 7 | 3 |
| 369 | 52.79 | temperature | 20 | 30 | > th | dose dependent | rect. | 7 | 11 |
| 396 | 52.89 | temperature | 25 | 30 | > th | dose dependent | rect. | 19 | 23 |
| 446 | 53.08 | temperature | 20 | 10 | > th | dose dependent | rect. | 3 | 23 |
| 454 | 53.12 | temperature | 20 | 10 | > th | dose dependent | rect. | 1 | 23 |
| 489 | 53.26 | temperature | 20 | 10 | > th | dose dependent | rect. | 7 | 8 |
| 493 | 53.28 | temperature | 20 | 30 | > th | dose dependent | rect. | 7 | 6 |
| 512 | 53.34 | temperature | 30 | 10 | < th | dose dependent | rect. | 11 | 21 |
| 567 | 53.47 | temperature | 30 | 10 | < th | dose dependent | rect. | 11 | 23 |
| 572 | 53.49 | temperature | 25 | 10 | > th | dose dependent | no | NA | NA |
| 582 | 53.51 | temperature | 25 | 10 | > th | dose dependent | rect. | 17 | 23 |
| 599 | 53.55 | temperature | 15 | 270 | > th | dose dependent | rect. | 19 | 16 |
| 606 | 53.56 | temperature | 30 | 90 | < th | dose dependent | rect. | 11 | 8 |
| 668 | 53.67 | temperature | 25 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 691 | 53.72 | temperature | 10 | 10 | > th | dose dependent | no | NA | NA |
| 734 | 53.78 | temperature | 25 | 10 | > th | dose dependent | rect. | 21 | 23 |
| 767 | 53.85 | temperature | 10 | 270 | > th | dose dependent | rect. | 16 | 23 |
| 774 | 53.88 | temperature | 30 | 270 | < th | dose independent | rect. | 11 | 19 |
| 775 | 53.88 | temperature | 30 | 10 | < th | dose dependent | no | NA | NA |
| 782 | 53.88 | temperature | 30 | 10 | < th | dose dependent | rect. | 13 | 23 |
| 832 | 53.98 | temperature | 30 | 30 | < th | dose dependent | rect. | 15 | 23 |
| 841 | 54.00 | temperature | 30 | 10 | < th | dose dependent | rect. | 21 | 23 |
| 845 | 54.02 | temperature | 25 | 90 | > th | dose dependent | rect. | 1 | 10 |
| 853 | 54.03 | temperature | 30 | 10 | < th | dose dependent | rect. | 17 | 23 |
| 854 | 54.04 | temperature | 30 | 270 | < th | dose independent | rect. | 11 | 7 |
| 880 | 54.10 | atmosphere | 1000 | 10 | > th | dose independent | rect. | 11 | 23 |
| 885 | 54.10 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 18 |
| 899 | 54.13 | radiation | 10 | 90 | > th | dose independent | sin | 3 | NA |
| 930 | 54.19 | temperature | 25 | 90 | > th | dose independent | rect. | 7 | 17 |
| 933 | 54.19 | atmosphere | 995 | 270 | > th | dose dependent | rect. | 11 | 19 |
| 970 | 54.26 | temperature | 25 | 10 | > th | dose dependent | rect. | 14 | 23 |
| 982 | 54.29 | atmosphere | 995 | 90 | > th | dose dependent | rect. | 13 | 18 |