Os07g0479100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Zinc finger, RING-type domain containing protein.
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Os07g0479100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Zinc finger, RING-type domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 65.33 | 0.38 | 8.47 | 0.781 | 1.72 | 1.34 | -0.407 | -0.678 | 0.122 | 21.2 | 23.8 | 846 | -- | -- |
| 65.83 | 0.378 | 8.49 | 0.745 | 1.7 | 1.46 | -0.299 | -- | 0.0857 | 21.2 | 23.3 | 893 | -- | -- |
| 65.8 | 0.378 | 8.47 | 0.754 | 1.71 | 1.34 | -- | -0.467 | 0.117 | 21.2 | 23.65 | 888 | -- | -- |
| 65.9 | 0.378 | 8.48 | 0.713 | 1.72 | 1.49 | -- | -- | 0.0934 | 21.2 | 23.3 | 885 | -- | -- |
| 210.66 | 0.68 | 8.44 | 0.636 | -- | 1.3 | -- | -0.443 | 0.0386 | -- | 23.65 | 888 | -- | -- |
| 93.93 | 0.454 | 8.54 | 0.289 | 1.59 | -- | -0.201 | -- | -0.159 | 21 | -- | -- | -- | -- |
| 94.07 | 0.454 | 8.54 | 0.296 | 1.59 | -- | -- | -- | -0.159 | 21 | -- | -- | -- | -- |
| 210.99 | 0.679 | 8.45 | 0.583 | -- | 1.35 | -- | -- | 0.028 | -- | 23.65 | 888 | -- | -- |
| 77.21 | 0.409 | 8.51 | -- | 1.67 | 1.14 | -- | -- | -0.000456 | 21.2 | 23.6 | 833 | -- | -- |
| 238.5 | 0.722 | 8.49 | 0.297 | -- | -- | -- | -- | -0.169 | -- | -- | -- | -- | -- |
| 96.38 | 0.459 | 8.54 | -- | 1.59 | -- | -- | -- | -0.192 | 21 | -- | -- | -- | -- |
| 219.28 | 0.692 | 8.47 | -- | -- | 1.15 | -- | -- | -0.0622 | -- | 23.6 | 833 | -- | -- |
| 240.83 | 0.724 | 8.5 | -- | -- | -- | -- | -- | -0.202 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 56.44 | temperature | 15 | 720 | > th | dose dependent | rect. | 1 | 6 |
| 9 | 59.02 | temperature | 15 | 720 | > th | dose dependent | rect. | 1 | 12 |
| 10 | 59.12 | temperature | 25 | 720 | < th | dose dependent | sin | 7 | NA |
| 11 | 59.18 | temperature | 25 | 720 | < th | dose dependent | rect. | 22 | 14 |
| 15 | 59.33 | temperature | 15 | 720 | > th | dose dependent | sin | 7 | NA |
| 22 | 59.42 | temperature | 15 | 720 | > th | dose dependent | rect. | 21 | 16 |
| 24 | 59.47 | temperature | 15 | 720 | > th | dose dependent | rect. | 23 | 14 |
| 64 | 60.32 | temperature | 25 | 720 | < th | dose dependent | rect. | 1 | 7 |
| 119 | 61.09 | temperature | 25 | 720 | < th | dose dependent | rect. | 3 | 4 |
| 138 | 61.35 | temperature | 15 | 270 | > th | dose dependent | sin | 3 | NA |
| 196 | 62.05 | temperature | 20 | 720 | > th | dose independent | rect. | 3 | 10 |
| 258 | 62.67 | temperature | 20 | 720 | > th | dose independent | rect. | 1 | 13 |
| 314 | 63.22 | temperature | 20 | 720 | > th | dose independent | rect. | 3 | 4 |
| 461 | 64.67 | temperature | 20 | 720 | > th | dose independent | rect. | 23 | 15 |
| 463 | 64.69 | temperature | 20 | 720 | > th | dose independent | sin | 5 | NA |
| 508 | 64.95 | temperature | 30 | 90 | < th | dose dependent | rect. | 7 | 10 |
| 598 | 65.64 | temperature | 20 | 720 | > th | dose independent | rect. | 21 | 16 |
| 606 | 65.70 | temperature | 20 | 720 | < th | dose independent | rect. | 23 | 14 |
| 613 | 65.75 | temperature | 20 | 720 | < th | dose independent | sin | 6 | NA |
| 675 | 66.06 | temperature | 20 | 10 | > th | dose dependent | rect. | 3 | 15 |
| 831 | 66.84 | temperature | 15 | 10 | > th | dose dependent | rect. | 1 | 23 |
| 958 | 67.46 | temperature | 20 | 10 | > th | dose dependent | rect. | 3 | 17 |
| 959 | 67.47 | temperature | 20 | 720 | < th | dose independent | rect. | 3 | 4 |