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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0149800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to RING-H2 finger protein ATL1D.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.24 (0.0475) R2 : 0.56
β1 : -- (--) R2dD : -- R2D : --
β2 : 2.48 (0.123) R2dC : 0.395 R2C : 0.42
β3 : 2.59 (0.24) R2dE : 0.121 R2E : 0.155
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.198 (0.104) R2dN8 : 0.00567 R2N8 : 0.0187
σ : 0.882
deviance : 358.5
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_____
C
peak time of C : 18.3
E
wheather : radiation
threshold : 3.067
memory length : 1471
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
352.89 0.883 6.36 -0.439 2.5 3.52 1.59 5.44 -0.397 18.5 0.934 1449 -- --
352.66 0.875 6.27 -0.104 2.46 2.67 1.94 -- -0.241 18 3.172 1503 -- --
358.81 0.882 6.36 -0.498 2.49 3.55 -- 5.47 -0.399 18.5 0.8688 1454 -- --
359.08 0.883 6.26 -0.0293 2.5 2.6 -- -- -0.242 18.1 3.056 1493 -- --
678.85 1.21 6.31 -0.547 -- 3.84 -- 6.01 -0.443 -- 0.9382 1464 -- --
430.6 0.973 6.35 -0.448 2.55 -- 1.69 -- -0.625 18.6 -- -- -- --
437.8 0.98 6.35 -0.474 2.55 -- -- -- -0.62 18.6 -- -- -- --
678.5 1.21 6.2 -0.0692 -- 2.74 -- -- -0.258 -- 3.228 1469 -- --
358.5 0.882 6.24 -- 2.48 2.59 -- -- -0.198 18.3 3.067 1471 -- --
777.73 1.3 6.3 -0.535 -- -- -- -- -0.672 -- -- -- -- --
443.71 0.985 6.34 -- 2.56 -- -- -- -0.567 18.6 -- -- -- --
678.57 1.21 6.2 -- -- 2.77 -- -- -0.242 -- 3.182 1469 -- --
785.28 1.31 6.28 -- -- -- -- -- -0.613 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 343.99 radiation 1 1440 < th dose dependent rect. 8 22
2 344.01 radiation 1 1440 < th dose dependent rect. 8 20
3 344.04 radiation 1 1440 < th dose dependent rect. 8 17
4 344.07 radiation 1 1440 < th dose dependent rect. 8 13
8 344.19 radiation 1 1440 < th dose dependent rect. 8 11
9 344.20 radiation 1 1440 < th dose independent rect. 8 22
12 344.22 radiation 1 1440 > th dose independent rect. 8 22
33 345.61 radiation 1 1440 > th dose independent rect. 11 19
37 345.64 radiation 1 1440 < th dose independent rect. 11 19
64 346.14 radiation 1 1440 < th dose dependent sin 21 NA
106 350.09 wind 7 43200 < th dose independent rect. 17 1
123 350.56 radiation 1 1440 > th dose independent rect. 8 11
156 351.24 wind 7 43200 > th dose independent rect. 17 1
161 351.37 radiation 1 1440 < th dose independent rect. 8 17
163 351.39 radiation 1 1440 < th dose independent rect. 8 13
166 351.47 radiation 1 1440 < th dose independent rect. 8 11
183 352.11 radiation 1 1440 > th dose independent rect. 11 8
206 352.36 wind 7 43200 > th dose dependent rect. 11 11
208 352.42 radiation 1 720 < th dose dependent rect. 5 13
221 352.55 radiation 1 1440 > th dose independent sin 21 NA
224 352.68 wind 9 43200 > th dose dependent rect. 14 9
229 352.81 radiation 1 1440 < th dose dependent rect. 5 16
230 352.81 radiation 1 1440 < th dose dependent rect. 5 23
231 352.82 wind 9 43200 > th dose independent rect. 14 7
232 352.84 radiation 1 1440 < th dose dependent rect. 5 20
242 352.92 humidity 80 1440 < th dose independent rect. 7 13
248 352.97 radiation 1 1440 < th dose dependent rect. 23 19
250 352.99 wind 9 43200 > th dose independent rect. 14 9
256 353.02 radiation 1 1440 < th dose dependent rect. 20 22
267 353.08 radiation 1 1440 < th dose dependent rect. 2 16
279 353.21 radiation 1 1440 < th dose independent sin 21 NA
285 353.34 wind 9 43200 < th dose independent rect. 14 7
289 353.36 radiation 1 1440 < th dose dependent rect. 23 22
298 353.43 radiation 1 1440 < th dose dependent rect. 2 19
307 353.46 radiation 1 1440 < th dose dependent rect. 2 23
314 353.50 radiation 1 1440 < th dose dependent no NA NA
323 353.53 wind 9 43200 < th dose independent rect. 14 9
345 353.59 radiation 1 1440 < th dose dependent rect. 11 23
352 353.65 humidity 80 1440 > th dose independent rect. 7 14
363 353.94 wind 9 43200 > th dose dependent rect. 14 7
380 354.13 wind 7 43200 > th dose dependent rect. 14 4
408 354.66 wind 9 43200 < th dose independent rect. 11 14
425 354.95 temperature 25 1440 > th dose dependent rect. 13 1
436 355.05 wind 9 43200 > th dose independent rect. 11 14
514 355.99 radiation 1 1440 < th dose dependent rect. 16 23
560 356.52 temperature 25 1440 > th dose dependent rect. 13 8
563 356.55 temperature 25 1440 > th dose dependent rect. 11 10
602 356.88 temperature 25 1440 > th dose dependent rect. 11 4
616 357.01 temperature 25 1440 > th dose dependent sin 20 NA
638 357.15 humidity 80 1440 > th dose independent rect. 11 10
656 357.26 humidity 80 1440 < th dose independent sin 23 NA
660 357.31 humidity 80 1440 > th dose independent sin 22 NA
666 357.34 temperature 25 1440 > th dose dependent rect. 6 15
687 357.43 temperature 25 1440 > th dose dependent rect. 11 21
734 357.61 temperature 25 1440 > th dose dependent rect. 13 20
804 357.85 wind 7 43200 > th dose dependent rect. 15 1
830 357.97 radiation 1 1440 < th dose independent rect. 5 23
838 358.01 radiation 1 1440 < th dose independent rect. 5 16
839 358.01 radiation 1 1440 < th dose independent rect. 5 20
860 358.06 wind 9 43200 < th dose independent sin 17 NA
861 358.06 radiation 1 1440 > th dose independent rect. 5 14
875 358.07 radiation 1 1440 < th dose independent rect. 5 14
928 358.25 temperature 25 1440 > th dose dependent no NA NA
937 358.28 temperature 25 1440 > th dose dependent rect. 17 23
947 358.33 temperature 25 1440 > th dose dependent rect. 20 23
950 358.35 wind 9 43200 > th dose independent sin 17 NA
951 358.35 radiation 1 1440 < th dose independent rect. 23 22
967 358.42 radiation 1 1440 < th dose independent rect. 2 19
970 358.42 radiation 1 1440 < th dose independent rect. 2 23
973 358.44 radiation 1 1440 < th dose independent rect. 11 23
974 358.44 temperature 25 1440 > th dose dependent rect. 17 1
977 358.45 radiation 1 1440 < th dose independent no NA NA
983 358.45 radiation 1 1440 < th dose independent rect. 20 23