Os02g0743700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to RING-H2 finger protein ATL1Q.
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Os02g0743700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to RING-H2 finger protein ATL1Q.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 80.17 | 0.421 | 9.53 | 0.24 | 1.98 | -3.11 | -1.2 | -0.935 | -0.0268 | 13.9 | 0.86 | 714 | -- | -- |
| 81.08 | 0.419 | 9.54 | 0.196 | 1.9 | -3.13 | -0.895 | -- | -0.0454 | 13.9 | 0.8507 | 701 | -- | -- |
| 83.69 | 0.426 | 9.54 | 0.142 | 1.86 | -3.18 | -- | 0.0228 | -0.0578 | 13.8 | 0.661 | 698 | -- | -- |
| 83.7 | 0.426 | 9.54 | 0.143 | 1.86 | -3.18 | -- | -- | -0.0579 | 13.8 | 0.6609 | 698 | -- | -- |
| 94.2 | 0.452 | 9.56 | 0.355 | -- | -3.81 | -- | 0.762 | -0.0323 | -- | 1.379 | 511 | -- | -- |
| 102.68 | 0.475 | 9.55 | 0.393 | 3.97 | -- | -0.484 | -- | 0.0854 | 16 | -- | -- | -- | -- |
| 103.36 | 0.476 | 9.56 | 0.387 | 3.97 | -- | -- | -- | 0.0827 | 16 | -- | -- | -- | -- |
| 93.44 | 0.45 | 9.56 | 0.18 | -- | -3.97 | -- | -- | -0.0959 | -- | 1.346 | 515 | -- | -- |
| 84.23 | 0.427 | 9.54 | -- | 1.85 | -3.2 | -- | -- | -0.0718 | 13.8 | 0.67 | 698 | -- | -- |
| 962.06 | 1.45 | 9.54 | 0.225 | -- | -- | -- | -- | -0.0231 | -- | -- | -- | -- | -- |
| 107.31 | 0.485 | 9.57 | -- | 3.96 | -- | -- | -- | 0.0395 | 16 | -- | -- | -- | -- |
| 93.25 | 0.45 | 9.56 | -- | -- | -3.97 | -- | -- | -0.0984 | -- | 0.9343 | 516 | -- | -- |
| 963.4 | 1.45 | 9.55 | -- | -- | -- | -- | -- | -0.0481 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 77.32 | humidity | 70 | 720 | > th | dose independent | rect. | 18 | 11 |
| 3 | 77.44 | radiation | 1 | 720 | > th | dose independent | rect. | 13 | 17 |
| 4 | 77.47 | radiation | 1 | 720 | > th | dose independent | sin | 14 | NA |
| 5 | 77.57 | radiation | 1 | 720 | < th | dose independent | sin | 14 | NA |
| 8 | 78.08 | radiation | 1 | 270 | > th | dose independent | sin | 0 | NA |
| 9 | 78.12 | radiation | 1 | 720 | < th | dose independent | sin | 16 | NA |
| 13 | 78.28 | humidity | 70 | 720 | > th | dose independent | rect. | 17 | 4 |
| 14 | 78.31 | radiation | 1 | 270 | < th | dose dependent | rect. | 15 | 4 |
| 15 | 78.46 | radiation | 1 | 720 | < th | dose dependent | sin | 16 | NA |
| 16 | 78.50 | radiation | 1 | 720 | < th | dose independent | rect. | 15 | 15 |
| 19 | 78.59 | radiation | 1 | 720 | > th | dose independent | rect. | 13 | 6 |
| 29 | 78.62 | radiation | 1 | 270 | < th | dose dependent | rect. | 5 | 15 |
| 33 | 78.74 | radiation | 1 | 720 | < th | dose independent | rect. | 17 | 10 |
| 34 | 78.78 | radiation | 1 | 270 | < th | dose dependent | rect. | 13 | 7 |
| 42 | 79.01 | radiation | 1 | 270 | < th | dose dependent | rect. | 10 | 10 |
| 50 | 79.20 | radiation | 1 | 720 | < th | dose dependent | sin | 14 | NA |
| 52 | 79.22 | radiation | 1 | 720 | < th | dose independent | rect. | 15 | 6 |
| 57 | 79.29 | radiation | 1 | 720 | < th | dose dependent | rect. | 15 | 15 |
| 58 | 79.36 | radiation | 1 | 270 | < th | dose independent | rect. | 13 | 7 |
| 59 | 79.38 | radiation | 1 | 270 | < th | dose independent | rect. | 15 | 4 |
| 60 | 79.38 | radiation | 1 | 720 | < th | dose independent | rect. | 11 | 20 |
| 64 | 79.43 | radiation | 1 | 270 | < th | dose independent | rect. | 6 | 14 |
| 79 | 79.54 | radiation | 1 | 270 | < th | dose independent | rect. | 10 | 10 |
| 105 | 79.89 | radiation | 20 | 14400 | < th | dose independent | rect. | 24 | 6 |
| 117 | 80.00 | radiation | 1 | 720 | < th | dose independent | rect. | 9 | 18 |
| 118 | 80.00 | radiation | 1 | 720 | < th | dose dependent | rect. | 17 | 10 |
| 124 | 80.05 | radiation | 1 | 720 | < th | dose independent | rect. | 22 | 23 |
| 136 | 80.18 | radiation | 1 | 720 | > th | dose independent | rect. | 11 | 22 |
| 139 | 80.22 | radiation | 1 | 720 | < th | dose independent | rect. | 14 | 22 |
| 146 | 80.31 | radiation | 1 | 720 | < th | dose independent | rect. | 5 | 23 |
| 147 | 80.31 | radiation | 1 | 720 | < th | dose dependent | sin | 0 | NA |
| 164 | 80.45 | radiation | 1 | 720 | < th | dose independent | rect. | 1 | 18 |
| 173 | 80.50 | radiation | 1 | 720 | < th | dose dependent | rect. | 11 | 20 |
| 204 | 80.67 | radiation | 1 | 720 | < th | dose dependent | rect. | 14 | 22 |
| 205 | 80.68 | radiation | 1 | 720 | < th | dose independent | no | NA | NA |
| 212 | 80.70 | radiation | 1 | 720 | < th | dose independent | rect. | 1 | 20 |
| 213 | 80.70 | radiation | 40 | 4320 | < th | dose dependent | rect. | 24 | 5 |
| 233 | 80.85 | temperature | 30 | 720 | < th | dose independent | rect. | 17 | 4 |
| 237 | 80.87 | temperature | 15 | 270 | > th | dose dependent | rect. | 20 | 8 |
| 240 | 80.87 | radiation | 1 | 720 | < th | dose dependent | rect. | 22 | 23 |
| 244 | 80.92 | radiation | 1 | 720 | > th | dose independent | rect. | 11 | 19 |
| 254 | 80.99 | radiation | 1 | 720 | < th | dose dependent | rect. | 6 | 21 |
| 255 | 81.00 | radiation | 1 | 720 | > th | dose independent | rect. | 5 | 14 |
| 269 | 81.01 | radiation | 1 | 720 | < th | dose dependent | rect. | 5 | 23 |
| 277 | 81.05 | radiation | 1 | 720 | > th | dose independent | no | NA | NA |
| 297 | 81.05 | radiation | 1 | 720 | > th | dose independent | rect. | 13 | 20 |
| 332 | 81.10 | radiation | 20 | 270 | < th | dose dependent | rect. | 15 | 17 |
| 335 | 81.12 | radiation | 1 | 270 | < th | dose independent | sin | 0 | NA |
| 342 | 81.15 | radiation | 1 | 720 | < th | dose dependent | rect. | 1 | 18 |
| 343 | 81.18 | radiation | 1 | 720 | < th | dose dependent | rect. | 9 | 18 |
| 356 | 81.26 | temperature | 30 | 720 | < th | dose independent | rect. | 17 | 12 |
| 362 | 81.30 | radiation | 1 | 720 | < th | dose dependent | rect. | 1 | 20 |
| 365 | 81.34 | radiation | 1 | 720 | < th | dose dependent | no | NA | NA |
| 366 | 81.34 | temperature | 30 | 270 | < th | dose dependent | rect. | 16 | 4 |
| 375 | 81.42 | radiation | 1 | 720 | < th | dose independent | rect. | 1 | 23 |
| 384 | 81.51 | radiation | 1 | 720 | > th | dose independent | rect. | 17 | 23 |
| 411 | 81.63 | radiation | 1 | 720 | > th | dose independent | rect. | 7 | 23 |
| 440 | 81.73 | radiation | 1 | 720 | < th | dose dependent | rect. | 1 | 23 |
| 450 | 81.80 | radiation | 1 | 720 | > th | dose independent | rect. | 13 | 23 |
| 487 | 82.07 | humidity | 70 | 720 | > th | dose independent | sin | 12 | NA |
| 509 | 82.27 | temperature | 10 | 720 | > th | dose dependent | rect. | 13 | 12 |
| 519 | 82.35 | humidity | 50 | 720 | > th | dose dependent | rect. | 17 | 4 |
| 524 | 82.40 | temperature | 10 | 720 | > th | dose dependent | rect. | 15 | 9 |
| 598 | 82.80 | radiation | 10 | 43200 | < th | dose dependent | rect. | 23 | 5 |
| 762 | 83.77 | temperature | 30 | 90 | < th | dose dependent | rect. | 17 | 16 |
| 779 | 83.90 | temperature | 20 | 270 | > th | dose dependent | rect. | 22 | 3 |
| 782 | 83.91 | radiation | 1 | 270 | > th | dose independent | rect. | 7 | 10 |
| 787 | 83.92 | temperature | 30 | 270 | < th | dose dependent | rect. | 15 | 17 |
| 860 | 84.20 | wind | 1 | 30 | > th | dose independent | rect. | 4 | 19 |
| 903 | 84.40 | temperature | 25 | 720 | > th | dose independent | rect. | 13 | 11 |
| 931 | 84.47 | radiation | 10 | 1440 | < th | dose independent | rect. | 24 | 5 |
| 932 | 84.48 | radiation | 40 | 1440 | < th | dose dependent | rect. | 18 | 6 |