BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0743700 Os02g0743700|AK070302
(220 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os02g0743700 Similar to RING-H2 finger protein ATL1Q 359 e-100
Os06g0231600 Zinc finger, RING-type domain containing protein 207 6e-54
Os10g0544600 Fibrillarin family protein 121 4e-28
Os06g0717600 Zinc finger, RING-type domain containing protein 114 5e-26
Os07g0479100 Zinc finger, RING-type domain containing protein 96 2e-20
Os08g0550400 Similar to RING-H2 finger protein ATL5P 91 6e-19
Os12g0432600 Zinc finger, RING-type domain containing protein 73 2e-13
Os06g0534900 Zinc finger, RING-type domain containing protein 72 4e-13
Os09g0542600 Similar to RING-H2 finger protein ATL1I 71 7e-13
Os06g0535200 Zinc finger, RING-type domain containing protein 70 1e-12
Os02g0541500 69 3e-12
Os02g0686100 Similar to RING-H2 finger protein ATL1B 67 8e-12
Os06g0192800 Similar to RING-H2 finger protein ATL1R (RING-... 67 8e-12
Os09g0468300 Zinc finger, RING-type domain containing protein 67 9e-12
Os03g0340100 67 1e-11
Os02g0249200 67 1e-11
Os01g0212700 Zinc finger, RING-type domain containing protein 66 2e-11
Os02g0692000 Similar to RING finger family protein 66 2e-11
Os01g0213100 66 2e-11
Os06g0666500 Zinc finger, RING-type domain containing protein 65 3e-11
Os06g0155200 65 3e-11
AK064102 65 4e-11
Os06g0537300 65 4e-11
Os02g0248320 Zinc finger, RING-type domain containing protein 65 5e-11
Os04g0590900 Similar to RING-H2 finger protein ATL1B 64 6e-11
Os02g0248200 64 6e-11
Os03g0272300 Zinc finger, RING-type domain containing protein 64 7e-11
Os08g0484200 Zinc finger, RING-type domain containing protein 64 7e-11
Os06g0539800 64 8e-11
>Os02g0743700 Similar to RING-H2 finger protein ATL1Q
Length = 220
Score = 359 bits (922), Expect = e-100, Method: Compositional matrix adjust.
Identities = 179/220 (81%), Positives = 179/220 (81%)
Query: 1 MEVAAAEDALEESGVAVYLPRLLAGVISXXXXXXXXXXXXXXXXXXXXXXXXXSDSXXXX 60
MEVAAAEDALEESGVAVYLPRLLAGVIS SDS
Sbjct: 1 MEVAAAEDALEESGVAVYLPRLLAGVISGALTGLFALAGALTGAVTGALAGRASDSGVLR 60
Query: 61 XXXXXXXXXXXXSIEVLEASRAYWCSDRLGSHGTSSMADFIEQLLQARFVQEQIVPSGYA 120
SIEVLEASRAYWCSDRLGSHGTSSMADFIEQLLQARFVQEQIVPSGYA
Sbjct: 61 GAGLGAFAGAVLSIEVLEASRAYWCSDRLGSHGTSSMADFIEQLLQARFVQEQIVPSGYA 120
Query: 121 THRWQVSISDFGHDDLYDIFGDCSSKGLSRESLNKLPHYVVTDQTRNSFGEDLSCTICLQ 180
THRWQVSISDFGHDDLYDIFGDCSSKGLSRESLNKLPHYVVTDQTRNSFGEDLSCTICLQ
Sbjct: 121 THRWQVSISDFGHDDLYDIFGDCSSKGLSRESLNKLPHYVVTDQTRNSFGEDLSCTICLQ 180
Query: 181 DIVTGETARRLPNCSHTFHQPCVDKWLVGHGSCPVCRQCV 220
DIVTGETARRLPNCSHTFHQPCVDKWLVGHGSCPVCRQCV
Sbjct: 181 DIVTGETARRLPNCSHTFHQPCVDKWLVGHGSCPVCRQCV 220
>Os06g0231600 Zinc finger, RING-type domain containing protein
Length = 222
Score = 207 bits (526), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 111/221 (50%), Positives = 132/221 (59%), Gaps = 6/221 (2%)
Query: 1 MEVAAAE---DALEESG--VAVYLPRLLAGVISXXXXXXXXXXXXXXXXXXXXXXXXXSD 55
MEVA A A EES A LPRLL GV+S SD
Sbjct: 1 MEVAPAAAMTRAEEESRRRAATRLPRLLRGVVSGMLTGIFAVAGGLTGAVTGALAGRASD 60
Query: 56 SXXXXXXXXXXXXXXXXSIEVLEASRAYWCSDRLGSHGTSSMADFIEQLLQARFVQEQIV 115
SIE+LEASRAYWC DR S G+ SM DF++QL+ ARFVQEQ
Sbjct: 61 GGVLRGAGLGTFAGAVLSIEILEASRAYWCQDRSSSPGSLSMGDFVKQLIHARFVQEQNE 120
Query: 116 PSGYATHRWQVSISDFGHDDLYDIFGDC-SSKGLSRESLNKLPHYVVTDQTRNSFGEDLS 174
SG+ T+RWQV I+D + +++I GD S +GLS+ SL KLP++VV D S GE LS
Sbjct: 121 ASGHITYRWQVGIADVVNGAVHEILGDVPSGEGLSKYSLMKLPYHVVIDHNNGSIGESLS 180
Query: 175 CTICLQDIVTGETARRLPNCSHTFHQPCVDKWLVGHGSCPV 215
C +CLQD+V G+T RRLP CSHTFHQPCVDKWLVGHGSCP+
Sbjct: 181 CPVCLQDVVAGQTVRRLPKCSHTFHQPCVDKWLVGHGSCPM 221
>Os10g0544600 Fibrillarin family protein
Length = 233
Score = 121 bits (303), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 62/147 (42%), Positives = 85/147 (57%), Gaps = 1/147 (0%)
Query: 73 SIEVLEASRAYWCSDRLGSHGTSSMADFIEQLLQARFVQEQIVPSGYATHRWQVSISDFG 132
SIEV E+SR W S M D I LL R V+E++ P+ + + Q+S
Sbjct: 85 SIEVAESSRDLWHSSDSAVWCLVYMVDIISSLLSGRLVREKVGPAVQSAVQSQISAISSP 144
Query: 133 HDDLYDIFGDCSSKGLSRESLNKLPHYVVT-DQTRNSFGEDLSCTICLQDIVTGETARRL 191
+ D+F +KGL ++L +LP +T D +S GE + C++CLQD GE ARRL
Sbjct: 145 FAETSDLFETGGTKGLPADTLRRLPAIKITGDNAVDSAGEPICCSVCLQDFRVGEMARRL 204
Query: 192 PNCSHTFHQPCVDKWLVGHGSCPVCRQ 218
P+C H FH PC+D WLV HGSCP+CR+
Sbjct: 205 PSCRHVFHVPCIDCWLVRHGSCPLCRR 231
>Os06g0717600 Zinc finger, RING-type domain containing protein
Length = 232
Score = 114 bits (285), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 60/151 (39%), Positives = 89/151 (58%), Gaps = 8/151 (5%)
Query: 73 SIEVLEASRAYWCSDRLGSHGTSSMADFIEQLLQARFVQEQIVPSGYATHRWQVSISDFG 132
SIEV+++S W S R G + + I LL R V+E++ P+ R Q++ D
Sbjct: 83 SIEVVDSSIRVWRSRRSGISSICYVLNVIYSLLTGRLVREKVDPAVQRVVRSQMNAVDSS 142
Query: 133 ----HDDLYDIFGDCSSKGLSRESLNKLPHYVVTDQ-TRNSFGEDLSCTICLQDIVTGET 187
DL++I G + G+ R S++KLP +T++ RN+ G+ C++CLQD TGE
Sbjct: 143 PFRESPDLFEIEG---TNGMPRASIDKLPEVRITEEYRRNAIGDLSGCSVCLQDFQTGEK 199
Query: 188 ARRLPNCSHTFHQPCVDKWLVGHGSCPVCRQ 218
R LP+C H FH PC+D WL+ HGSCP+CR+
Sbjct: 200 VRSLPDCWHVFHVPCIDGWLIKHGSCPLCRR 230
>Os07g0479100 Zinc finger, RING-type domain containing protein
Length = 249
Score = 96.3 bits (238), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 49/145 (33%), Positives = 73/145 (50%)
Query: 73 SIEVLEASRAYWCSDRLGSHGTSSMADFIEQLLQARFVQEQIVPSGYATHRWQVSISDFG 132
SIE +E+ W S G + + D I L R V E++ P+ + Q+S+
Sbjct: 95 SIEAVESCIEIWRSSESGKYSIIFVLDIISSLFSGRIVWEKVSPALQRAVQSQMSLLSTP 154
Query: 133 HDDLYDIFGDCSSKGLSRESLNKLPHYVVTDQTRNSFGEDLSCTICLQDIVTGETARRLP 192
D D+F ++ G+SR+ +N++P + T D C +CLQD + R LP
Sbjct: 155 FIDNNDLFETGNTGGMSRDLINRIPKTTFSAATNPDQETDNCCAVCLQDFGASQFVRVLP 214
Query: 193 NCSHTFHQPCVDKWLVGHGSCPVCR 217
+C HTFH C+D WL H SCP+CR
Sbjct: 215 HCQHTFHARCIDNWLFRHASCPLCR 239
>Os08g0550400 Similar to RING-H2 finger protein ATL5P
Length = 260
Score = 90.9 bits (224), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 52/156 (33%), Positives = 82/156 (52%), Gaps = 12/156 (7%)
Query: 73 SIEVLEASRAYWCSDRLGSHGTSSMADFIEQLLQARFVQEQIVPSGYATHRWQVSISDFG 132
++EV+++S A WCS G + D I LL R V+E++ P+ Q++ +D
Sbjct: 92 AMEVVDSSVAMWCSHDSGIWSVLYVLDVIWSLLTGRLVREKVDPAVQNAVDSQMNAADAP 151
Query: 133 HDD----LYDIFGD------CSSKGLSRESLNKLPHYVVTDQTRNSFGEDLSCTICLQDI 182
+ L ++F ++ G+ +++ LP V T + C++CLQD+
Sbjct: 152 FRESAPTLAEMFDTGIPGVAAAATGMPADAIAALP--VTTFAAAAGGDDRAGCSVCLQDL 209
Query: 183 VTGETARRLPNCSHTFHQPCVDKWLVGHGSCPVCRQ 218
GE ARRLP C HTFH C+D WL+ H SCP+CR+
Sbjct: 210 EDGERARRLPECGHTFHLRCIDSWLLRHASCPLCRR 245
>Os12g0432600 Zinc finger, RING-type domain containing protein
Length = 185
Score = 72.8 bits (177), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 46/74 (62%), Gaps = 4/74 (5%)
Query: 145 SKGLSRESLNKLPHYVVTDQTRNSFGEDLS-CTICLQDIVTGETARRLPNCSHTFHQPCV 203
++GLS+E + +P + + R S G ++ C +C+ + G+T RRLP C H FH PCV
Sbjct: 95 ARGLSQEDIEAIPAF---EYRRGSSGSGVAQCAVCIAAVKDGDTVRRLPACGHAFHAPCV 151
Query: 204 DKWLVGHGSCPVCR 217
D WL H +CP+CR
Sbjct: 152 DGWLRDHATCPMCR 165
>Os06g0534900 Zinc finger, RING-type domain containing protein
Length = 412
Score = 71.6 bits (174), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 49/86 (56%), Gaps = 12/86 (13%)
Query: 143 CSSKGLSRESLNKLPHYVVTDQTRNSFGEDLS----------CTICLQDIVTGETARRLP 192
C+S GL+ ++++ LP + + ED C +CL+D+V GET RRLP
Sbjct: 108 CASCGLAAQAIDALPAFAYEPPAADV--EDGGEGKPRGGGALCAVCLEDVVAGETVRRLP 165
Query: 193 NCSHTFHQPCVDKWLVGHGSCPVCRQ 218
+C H FH C+D WL H +CP+CR+
Sbjct: 166 SCGHLFHVDCIDMWLHAHRTCPLCRR 191
>Os09g0542600 Similar to RING-H2 finger protein ATL1I
Length = 217
Score = 70.9 bits (172), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 42/156 (26%), Positives = 75/156 (48%), Gaps = 12/156 (7%)
Query: 73 SIEVLEASRAYWCSDR--LGSHGTSSMADFIEQLLQARFVQEQIVPSGYATHRWQVSISD 130
++EV+++ WC + + + + F ++ V+ + P+ Q++
Sbjct: 65 AMEVVDSLAKIWCYEEYSIATRAHLMLLVFWNLVIDRLTVRTSVFPTLTTVLDSQLNAVP 124
Query: 131 FGHDDLYDIFGDCSSK------GLSRESLNKLPHYVVTDQTRNSFGEDLSCTICLQDIVT 184
H ++ GD + + G+ ++++LP +T ++ G +C ICL D
Sbjct: 125 SRHRR-AEVSGDLTGRSYPVVMGMRLAAVDQLPVIKLTAAQTDATG---ACPICLHDFKA 180
Query: 185 GETARRLPNCSHTFHQPCVDKWLVGHGSCPVCRQCV 220
GE ARRLP C H FH C+D WL+ H CP+CR+ V
Sbjct: 181 GEIARRLPACCHIFHLGCIDNWLLWHALCPMCRRPV 216
>Os06g0535200 Zinc finger, RING-type domain containing protein
Length = 223
Score = 70.1 bits (170), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
Query: 138 DIFGDCSSKGLSRESLNKLPHYVV-TDQTRNSFGEDLSCTICLQDIVTGETARRLPNCSH 196
++ G + G+S E+L +P + C +CL+ + GETARRLP+C+H
Sbjct: 118 ELQGAAARGGVSGETLASIPAFAYDASAHGGGGEAAAQCAVCLEALRGGETARRLPSCAH 177
Query: 197 TFHQPCVDKWLVGHGSCPVCRQCV 220
TFH C+D WL H +CPVCR+ V
Sbjct: 178 TFHVACIDMWLGSHATCPVCRRRV 201
>Os02g0541500
Length = 202
Score = 68.9 bits (167), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 43/74 (58%), Gaps = 4/74 (5%)
Query: 145 SKGLSRESLNKLPHYVVTDQTRNSFGEDLSCTICLQDIVTGETARRLPNCSHTFHQPCVD 204
+ G+ R++L +P V + + G +C ICL D+ GE R LP C+H FH CVD
Sbjct: 107 AAGVRRKALRAMPTMVYS----AAGGPSPACAICLADLEPGERVRVLPKCNHGFHVRCVD 162
Query: 205 KWLVGHGSCPVCRQ 218
+WL+ +CP CRQ
Sbjct: 163 RWLLARSTCPTCRQ 176
>Os02g0686100 Similar to RING-H2 finger protein ATL1B
Length = 189
Score = 67.4 bits (163), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 45/98 (45%), Gaps = 2/98 (2%)
Query: 121 THRWQVSISDFGHDDLYDIFGDCSSKGLSRESLNKLPHYVVTDQTRNSFGEDLSCTICLQ 180
T RW + ++KG+ +E L LP VT + GE C ICL
Sbjct: 48 TRRWARAAGGGTAAGGGGGGAAAANKGVKKEVLRSLP--TVTYVSDGGGGEAEECAICLV 105
Query: 181 DIVTGETARRLPNCSHTFHQPCVDKWLVGHGSCPVCRQ 218
+ G+ R LP C H FH C+D WL H SCP CR+
Sbjct: 106 EFEDGQAVRVLPQCDHRFHAACIDTWLRAHSSCPSCRR 143
>Os06g0192800 Similar to RING-H2 finger protein ATL1R (RING-H2 finger protein
ATL8)
Length = 321
Score = 67.4 bits (163), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 41/85 (48%), Gaps = 3/85 (3%)
Query: 139 IFGDCSS---KGLSRESLNKLPHYVVTDQTRNSFGEDLSCTICLQDIVTGETARRLPNCS 195
+F D S +GL +L LP V E L C +CL ++ GE R LP C
Sbjct: 73 LFLDASPFPRRGLPAAALRALPVTVYAKPAAARGEEALECAVCLSEVADGEKVRMLPKCD 132
Query: 196 HTFHQPCVDKWLVGHGSCPVCRQCV 220
H FH C+D W H +CP+CR V
Sbjct: 133 HGFHVECIDMWFHSHDTCPLCRAPV 157
>Os09g0468300 Zinc finger, RING-type domain containing protein
Length = 392
Score = 67.0 bits (162), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
Query: 146 KGLSRESLNKLPHYVVTD-QTRNSFGEDLSCTICLQDIVTGETARRLPNCSHTFHQPCVD 204
+GL + L P D + S L C +C+ + ET R LP CSH FHQ C+D
Sbjct: 95 RGLDQSVLATFPTMAYADVKAHKSVKGALECAVCISEFDDDETLRLLPKCSHVFHQDCID 154
Query: 205 KWLVGHGSCPVCR 217
WL H +CPVCR
Sbjct: 155 TWLASHATCPVCR 167
>Os03g0340100
Length = 200
Score = 66.6 bits (161), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 41/78 (52%), Gaps = 1/78 (1%)
Query: 144 SSKGLSRESLNKLPHYV-VTDQTRNSFGEDLSCTICLQDIVTGETARRLPNCSHTFHQPC 202
+ GL RE L LP YV + + C +C+ ++ G+T R LP C H FH C
Sbjct: 101 AGGGLGREDLMALPVYVHGASAAADGGAKAEECAVCIGELRDGDTGRLLPRCGHRFHAEC 160
Query: 203 VDKWLVGHGSCPVCRQCV 220
VDKW H +CP+CR V
Sbjct: 161 VDKWFRSHATCPLCRAAV 178
>Os02g0249200
Length = 166
Score = 66.6 bits (161), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 38/73 (52%)
Query: 146 KGLSRESLNKLPHYVVTDQTRNSFGEDLSCTICLQDIVTGETARRLPNCSHTFHQPCVDK 205
+GL+ +L +P + G C ICL + GE RRLP C H FH CVD
Sbjct: 81 RGLAPSALAAIPKFAYRRGAAGGGGGWAQCAICLGVVRDGEAVRRLPECKHLFHVECVDM 140
Query: 206 WLVGHGSCPVCRQ 218
WL H +CP+CR+
Sbjct: 141 WLYSHATCPLCRR 153
>Os01g0212700 Zinc finger, RING-type domain containing protein
Length = 185
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 42/79 (53%), Gaps = 2/79 (2%)
Query: 142 DCSSKGLSRESLNKLPHYVVTDQTRNSFGEDLSCTICLQDIVTGETARRLPNCSHTFHQP 201
+ +S G+S ++ LP + + + L C +CL + GE R+LP C H FH
Sbjct: 68 EANSHGMSAAAIAALPTFGY--EASAAAAAALDCAVCLGQVDAGEKVRQLPKCGHLFHAE 125
Query: 202 CVDKWLVGHGSCPVCRQCV 220
CVD WL H +CP+CR V
Sbjct: 126 CVDAWLRAHSTCPMCRAAV 144
>Os02g0692000 Similar to RING finger family protein
Length = 389
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 42/73 (57%), Gaps = 2/73 (2%)
Query: 145 SKGLSRESLNKLPHYVVTDQTRNSFGEDLSCTICLQDIVTGETARRLPNCSHTFHQPCVD 204
S G+ +NK+ V + + F + C++CL + GE+ R LP CSH FH PC+D
Sbjct: 136 SDGMDETLINKI--TVCKYRRGDGFVDSTDCSVCLGEFREGESLRLLPKCSHAFHVPCID 193
Query: 205 KWLVGHGSCPVCR 217
WL H +CP+CR
Sbjct: 194 TWLKSHSNCPLCR 206
>Os01g0213100
Length = 231
Score = 65.9 bits (159), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 44/75 (58%), Gaps = 6/75 (8%)
Query: 145 SKGLSRESLNKLPHYVVTDQTRNSFGE--DLSCTICLQDIVTGETARRLPNCSHTFHQPC 202
+ GL +++ LP + + R + E C+ICL + GE AR+LP C H FH+ C
Sbjct: 115 APGLGEDAIAALPKF----EYRGTGDECDRWECSICLCAVADGEVARQLPRCMHLFHRGC 170
Query: 203 VDKWLVGHGSCPVCR 217
VD WLV H +CPVCR
Sbjct: 171 VDMWLVAHTTCPVCR 185
>Os06g0666500 Zinc finger, RING-type domain containing protein
Length = 181
Score = 65.5 bits (158), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 38/75 (50%), Gaps = 3/75 (4%)
Query: 144 SSKGLSRESLNKLPHYVVTDQTRNSFGEDLSCTICLQDIVTGETARRLPNCSHTFHQPCV 203
+ GL RE + LP V + C ICL D GE R LP C H FH C+
Sbjct: 83 AGAGLKREDVVALP---VATYVASPAPSVAGCAICLSDFADGERVRLLPACGHRFHVVCI 139
Query: 204 DKWLVGHGSCPVCRQ 218
D+WL+ H SCP CR+
Sbjct: 140 DRWLLAHCSCPTCRR 154
>Os06g0155200
Length = 221
Score = 65.5 bits (158), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 28/58 (48%), Positives = 35/58 (60%)
Query: 163 DQTRNSFGEDLSCTICLQDIVTGETARRLPNCSHTFHQPCVDKWLVGHGSCPVCRQCV 220
+QT + G C+ICL GE RRLP+C H FH CVD+WL H +CP+CR V
Sbjct: 153 EQTAAAAGGWAQCSICLGLARVGEAVRRLPSCGHLFHAGCVDEWLRAHATCPLCRAAV 210
>AK064102
Length = 357
Score = 65.1 bits (157), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 34/61 (55%)
Query: 160 VVTDQTRNSFGEDLSCTICLQDIVTGETARRLPNCSHTFHQPCVDKWLVGHGSCPVCRQC 219
+ T + R G C +CL + GE R LP CSH FH PC+D WL H +CP+CR
Sbjct: 142 IATAEYRAGVGWGGDCAVCLGEFRDGELVRLLPRCSHPFHAPCIDTWLRAHVNCPLCRSP 201
Query: 220 V 220
V
Sbjct: 202 V 202
>Os06g0537300
Length = 174
Score = 65.1 bits (157), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 36/63 (57%), Gaps = 2/63 (3%)
Query: 155 KLPHYVVTDQTRNSFGEDLSCTICLQDIVTGETARRLPNCSHTFHQPCVDKWLVGHGSCP 214
K+P + R+ G + C++CL + GE RRLP C H +H C+D WL H +CP
Sbjct: 84 KIPEFAYAGSARHGGGGE--CSVCLGAVQGGEAVRRLPACKHLYHVECIDMWLASHATCP 141
Query: 215 VCR 217
+CR
Sbjct: 142 ICR 144
>Os02g0248320 Zinc finger, RING-type domain containing protein
Length = 222
Score = 64.7 bits (156), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 31/43 (72%)
Query: 175 CTICLQDIVTGETARRLPNCSHTFHQPCVDKWLVGHGSCPVCR 217
C +CL+D+ GET RRLP C H FH+ CVD WL H +CP+CR
Sbjct: 144 CAVCLEDVARGETVRRLPACGHLFHRDCVDMWLHSHTTCPLCR 186
>Os04g0590900 Similar to RING-H2 finger protein ATL1B
Length = 383
Score = 64.3 bits (155), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 40/71 (56%), Gaps = 2/71 (2%)
Query: 147 GLSRESLNKLPHYVVTDQTRNSFGEDLSCTICLQDIVTGETARRLPNCSHTFHQPCVDKW 206
GL +NK+ V + + F C++CL + GE+ R LP CSH FHQ C+D W
Sbjct: 131 GLDETLINKI--TVCKYRRGDGFVHTTDCSVCLGEFSDGESLRLLPRCSHAFHQQCIDTW 188
Query: 207 LVGHGSCPVCR 217
L H +CP+CR
Sbjct: 189 LKSHSNCPLCR 199
>Os02g0248200
Length = 211
Score = 64.3 bits (155), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 24/44 (54%), Positives = 32/44 (72%)
Query: 175 CTICLQDIVTGETARRLPNCSHTFHQPCVDKWLVGHGSCPVCRQ 218
C +CL ++ GE A+RLP C H FHQ C+D WL G+ +CPVCR+
Sbjct: 153 CAVCLGEVEKGEMAKRLPACLHVFHQRCIDAWLRGNSTCPVCRR 196
>Os03g0272300 Zinc finger, RING-type domain containing protein
Length = 233
Score = 64.3 bits (155), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 38/58 (65%), Gaps = 1/58 (1%)
Query: 163 DQTRNSFGEDLSCTICLQDIVTGETARRLPNCSHTFHQPCVDKWLVGHGSCPVCRQCV 220
D T N+ ++L+C++CL+ +V G+ R LP C H FH C+D WL G+CPVC+ V
Sbjct: 163 DATDNTLEDELTCSVCLEQVVVGDLLRSLP-CLHQFHANCIDPWLRQQGTCPVCKHRV 219
>Os08g0484200 Zinc finger, RING-type domain containing protein
Length = 413
Score = 64.3 bits (155), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
Query: 146 KGLSRESLNKLPHYVVTDQTRNSFGED-LSCTICLQDIVTGETARRLPNCSHTFHQPCVD 204
+GL L P D + G+ L C +CL + ET R LP CSH FH C+D
Sbjct: 115 RGLDPAVLGAFPTMAYADVKAHKAGKGALECAVCLSEFDDDETLRLLPRCSHAFHADCID 174
Query: 205 KWLVGHGSCPVCR 217
WL H +CPVCR
Sbjct: 175 AWLASHVTCPVCR 187
>Os06g0539800
Length = 167
Score = 63.9 bits (154), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 36/63 (57%), Gaps = 2/63 (3%)
Query: 155 KLPHYVVTDQTRNSFGEDLSCTICLQDIVTGETARRLPNCSHTFHQPCVDKWLVGHGSCP 214
K+P + R+ G + C++CL + GE RRLP C H +H C+D WL H +CP
Sbjct: 77 KIPEFAYAGSARHGGGGE--CSVCLGAVQGGEAVRRLPACKHLYHVECIDMWLASHATCP 134
Query: 215 VCR 217
+CR
Sbjct: 135 LCR 137
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.320 0.134 0.419
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,185,193
Number of extensions: 216214
Number of successful extensions: 1047
Number of sequences better than 1.0e-10: 47
Number of HSP's gapped: 1085
Number of HSP's successfully gapped: 47
Length of query: 220
Length of database: 17,035,801
Length adjustment: 97
Effective length of query: 123
Effective length of database: 11,971,043
Effective search space: 1472438289
Effective search space used: 1472438289
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 154 (63.9 bits)