Os03g0272300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Zinc finger, RING-type domain containing protein.
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Os03g0272300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Zinc finger, RING-type domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 34.14 | 0.275 | 9.17 | -0.462 | 0.921 | 0.891 | -0.561 | -3.46 | -0.176 | 7.45 | 25.8 | 228 | -- | -- |
| 37.28 | 0.284 | 9.12 | -0.11 | 0.923 | 0.578 | -0.204 | -- | -0.101 | 7.63 | 25.61 | 260 | -- | -- |
| 34.94 | 0.275 | 9.16 | -0.434 | 0.923 | 0.886 | -- | -3.1 | -0.163 | 7.46 | 25.87 | 227 | -- | -- |
| 37.39 | 0.285 | 9.12 | -0.091 | 0.904 | 0.588 | -- | -- | -0.0819 | 7.67 | 26 | 251 | -- | -- |
| 67.35 | 0.384 | 9.18 | -0.336 | -- | 0.609 | -- | -2.91 | -0.137 | -- | 25.87 | 227 | -- | -- |
| 42.2 | 0.305 | 9.12 | 0.0131 | 0.741 | -- | -0.501 | -- | -0.0595 | 8.5 | -- | -- | -- | -- |
| 43 | 0.307 | 9.12 | -0.00248 | 0.741 | -- | -- | -- | -0.0594 | 8.52 | -- | -- | -- | -- |
| 70.39 | 0.392 | 9.14 | -0.0495 | -- | 0.389 | -- | -- | -0.0669 | -- | 25.87 | 227 | -- | -- |
| 37.6 | 0.286 | 9.12 | -- | 0.891 | 0.559 | -- | -- | -0.0693 | 7.71 | 26.1 | 249 | -- | -- |
| 73.79 | 0.401 | 9.14 | 0.000586 | -- | -- | -- | -- | -0.0524 | -- | -- | -- | -- | -- |
| 43 | 0.307 | 9.12 | -- | 0.741 | -- | -- | -- | -0.0592 | 8.52 | -- | -- | -- | -- |
| 70.45 | 0.392 | 9.14 | -- | -- | 0.381 | -- | -- | -0.0612 | -- | 25.87 | 227 | -- | -- |
| 73.79 | 0.401 | 9.14 | -- | -- | -- | -- | -- | -0.0525 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 30.91 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 4 | 4 |
| 2 | 30.97 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 3 | 15 |
| 6 | 31.39 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 3 | 16 |
| 23 | 31.89 | temperature | 15.0 | 30 | > th | dose dependent | rect. | 5 | 17 |
| 24 | 31.90 | temperature | 30.0 | 270 | < th | dose independent | rect. | 7 | 20 |
| 46 | 32.29 | temperature | 30.0 | 90 | < th | dose independent | rect. | 9 | 19 |
| 59 | 32.50 | temperature | 30.0 | 10 | < th | dose independent | rect. | 11 | 18 |
| 63 | 32.52 | temperature | 20.0 | 720 | > th | dose independent | rect. | 4 | 3 |
| 80 | 32.68 | temperature | 30.0 | 10 | < th | dose independent | rect. | 9 | 20 |
| 104 | 32.90 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 3 | 10 |
| 121 | 33.05 | radiation | 1.0 | 90 | > th | dose independent | sin | 12 | NA |
| 172 | 33.35 | radiation | 1.0 | 90 | < th | dose dependent | sin | 12 | NA |
| 188 | 33.40 | radiation | 1.0 | 90 | < th | dose independent | sin | 12 | NA |
| 199 | 33.46 | temperature | 30.0 | 270 | < th | dose independent | rect. | 7 | 8 |
| 208 | 33.50 | radiation | 1.0 | 30 | > th | dose independent | rect. | 16 | 17 |
| 220 | 33.55 | humidity | 50.0 | 270 | > th | dose independent | rect. | 7 | 20 |
| 249 | 33.69 | temperature | 20.0 | 720 | > th | dose dependent | sin | 5 | NA |
| 252 | 33.69 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 7 | 9 |
| 257 | 33.72 | temperature | 30.0 | 90 | < th | dose independent | rect. | 9 | 7 |
| 265 | 33.75 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 4 | 9 |
| 271 | 33.77 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 19 | 8 |
| 306 | 33.89 | temperature | 25.0 | 270 | > th | dose dependent | sin | 22 | NA |
| 310 | 33.90 | radiation | 1.0 | 30 | > th | dose independent | rect. | 12 | 23 |
| 329 | 33.94 | humidity | 50.0 | 270 | > th | dose independent | rect. | 6 | 22 |
| 338 | 33.96 | temperature | 25.0 | 10 | > th | dose dependent | rect. | 12 | 23 |
| 342 | 33.99 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 3 | 4 |
| 344 | 33.99 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 3 | 4 |
| 372 | 34.05 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 6 | 21 |
| 379 | 34.07 | wind | 5.0 | 270 | < th | dose independent | rect. | 3 | 4 |
| 382 | 34.08 | temperature | 15.0 | 270 | > th | dose independent | rect. | 7 | 20 |
| 388 | 34.10 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 7 | 2 |
| 391 | 34.11 | wind | 9.0 | 270 | < th | dose independent | rect. | 7 | 20 |
| 397 | 34.13 | radiation | 20.0 | 270 | < th | dose independent | rect. | 3 | 4 |
| 402 | 34.14 | humidity | 50.0 | 90 | > th | dose independent | rect. | 9 | 19 |
| 415 | 34.16 | radiation | 1.0 | 270 | < th | dose independent | rect. | 6 | 21 |
| 432 | 34.19 | temperature | 10.0 | 270 | > th | dose independent | rect. | 3 | 4 |
| 434 | 34.19 | temperature | 30.0 | 270 | < th | dose independent | rect. | 3 | 4 |
| 435 | 34.19 | humidity | 50.0 | 270 | > th | dose independent | rect. | 3 | 4 |
| 437 | 34.19 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 3 | 4 |
| 438 | 34.19 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 3 | 4 |
| 449 | 34.20 | temperature | 30.0 | 270 | < th | dose independent | rect. | 22 | 14 |
| 483 | 34.26 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 12 | 9 |
| 519 | 34.31 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 5 | 2 |
| 527 | 34.32 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 2 | 8 |
| 532 | 34.33 | temperature | 30.0 | 10 | < th | dose independent | rect. | 9 | 7 |
| 533 | 34.33 | wind | 9.0 | 270 | < th | dose dependent | rect. | 3 | 4 |
| 536 | 34.34 | radiation | 1.0 | 270 | < th | dose independent | rect. | 15 | 12 |
| 540 | 34.35 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 12 | 10 |
| 541 | 34.35 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 3 | 4 |
| 544 | 34.35 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 12 | 10 |
| 550 | 34.36 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 24 | 10 |
| 565 | 34.39 | temperature | 30.0 | 270 | < th | dose independent | rect. | 18 | 23 |
| 567 | 34.39 | radiation | 10.0 | 270 | < th | dose dependent | rect. | 16 | 11 |
| 578 | 34.42 | radiation | 1.0 | 270 | < th | dose independent | rect. | 10 | 17 |
| 589 | 34.43 | radiation | 1.0 | 270 | < th | dose independent | rect. | 13 | 14 |
| 639 | 34.50 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 4 | 5 |
| 661 | 34.53 | wind | 1.0 | 90 | > th | dose independent | rect. | 9 | 19 |
| 663 | 34.53 | temperature | 15.0 | 90 | > th | dose dependent | rect. | 22 | 6 |
| 669 | 34.54 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 10 | 17 |
| 679 | 34.55 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 13 | 14 |
| 688 | 34.56 | radiation | 1.0 | 30 | > th | dose independent | rect. | 12 | 21 |
| 697 | 34.57 | wind | 1.0 | 270 | > th | dose independent | rect. | 7 | 20 |
| 725 | 34.60 | radiation | 20.0 | 270 | < th | dose independent | rect. | 2 | 6 |
| 729 | 34.61 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 7 | 20 |
| 735 | 34.61 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 7 | 20 |
| 749 | 34.63 | wind | 9.0 | 270 | < th | dose independent | rect. | 22 | 14 |
| 764 | 34.65 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 3 | 15 |
| 769 | 34.65 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 3 | 15 |
| 790 | 34.67 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 22 | 7 |
| 821 | 34.69 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 7 | 20 |
| 833 | 34.70 | temperature | 10.0 | 270 | > th | dose independent | rect. | 12 | 10 |
| 834 | 34.70 | temperature | 10.0 | 270 | > th | dose independent | rect. | 22 | 14 |
| 835 | 34.70 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 22 | 14 |
| 843 | 34.71 | humidity | 60.0 | 270 | > th | dose independent | rect. | 17 | 10 |
| 849 | 34.73 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 3 | 4 |
| 854 | 34.74 | wind | 9.0 | 90 | < th | dose independent | rect. | 9 | 19 |
| 860 | 34.75 | atmosphere | 995.0 | 270 | > th | dose dependent | rect. | 3 | 4 |
| 875 | 34.77 | temperature | 25.0 | 270 | > th | dose dependent | no | NA | NA |
| 930 | 34.82 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 22 | 14 |
| 943 | 34.84 | temperature | 15.0 | 270 | > th | dose independent | rect. | 18 | 9 |
| 994 | 34.88 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 7 | 20 |