BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0272300 Os03g0272300|AK071865
         (233 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os03g0272300  Zinc finger, RING-type domain containing protein    382   e-107
Os02g0787500  Zinc finger, RING-type domain containing protein     66   2e-11
Os04g0511600  Similar to RING-H2 finger protein ATL3G              66   2e-11
Os02g0743700  Similar to RING-H2 finger protein ATL1Q              64   7e-11

>Os03g0272300 Zinc finger, RING-type domain containing protein
          Length = 233

 Score =  382 bits (982), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 189/233 (81%), Positives = 189/233 (81%)

Query: 1   MLFMVLNSHQMSPNFLVWLVLGVFLMATSLRMYATCXXXXXXXXXXXXXXNGFLGHTELR 60
           MLFMVLNSHQMSPNFLVWLVLGVFLMATSLRMYATC              NGFLGHTELR
Sbjct: 1   MLFMVLNSHQMSPNFLVWLVLGVFLMATSLRMYATCQQLQAQAQAHAAAANGFLGHTELR 60

Query: 61  VHVPPTIALATXXXXXXXXXXXXXXXXEFXXXXXXXXXXXXXXNSPHAPSMSEEEINALP 120
           VHVPPTIALAT                EF              NSPHAPSMSEEEINALP
Sbjct: 61  VHVPPTIALATRGRLQSLRLQLALLDREFDDLDYDALRALDADNSPHAPSMSEEEINALP 120

Query: 121 VFKYKVQAHQGSASFRKSDGPSQPSVSSTESGNEKKQDRFKADATDNTLEDELTCSVCLE 180
           VFKYKVQAHQGSASFRKSDGPSQPSVSSTESGNEKKQDRFKADATDNTLEDELTCSVCLE
Sbjct: 121 VFKYKVQAHQGSASFRKSDGPSQPSVSSTESGNEKKQDRFKADATDNTLEDELTCSVCLE 180

Query: 181 QVVVGDLLRSLPCLHQFHANCIDPWLRQQGTCPVCKHRVSDGWHGEADASNMV 233
           QVVVGDLLRSLPCLHQFHANCIDPWLRQQGTCPVCKHRVSDGWHGEADASNMV
Sbjct: 181 QVVVGDLLRSLPCLHQFHANCIDPWLRQQGTCPVCKHRVSDGWHGEADASNMV 233



>Os02g0787500 Zinc finger, RING-type domain containing protein
          Length = 342

 Score = 66.2 bits (160), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 35/109 (32%), Positives = 56/109 (51%), Gaps = 13/109 (11%)

Query: 112 SEEEINALPVFKYKVQAHQGSASFRKSDGPSQPSVSSTESGNEKKQDRFKADATDNTLED 171
           + E IN+LP +K+K +  + S S  +++G     V++   G +K++     DA       
Sbjct: 223 TSESINSLPTYKFKTKKRRHS-SGNEAEGQDGGIVAA---GTDKERSLSAEDAV------ 272

Query: 172 ELTCSVCLEQVVVGDLLRSLPCLHQFHANCIDPWLRQQGTCPVCKHRVS 220
              C +CL +    D LR LPC H FH  C+D WL+    CP+CK  ++
Sbjct: 273 ---CCICLAKYAHNDELRELPCTHCFHKECVDKWLKINALCPLCKSEIA 318



>Os04g0511600 Similar to RING-H2 finger protein ATL3G
          Length = 730

 Score = 66.2 bits (160), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 25/49 (51%), Positives = 33/49 (67%)

Query: 172 ELTCSVCLEQVVVGDLLRSLPCLHQFHANCIDPWLRQQGTCPVCKHRVS 220
           E  C+VCL+   +GD +R LPC H FH  CID WLR++  CPVCK  ++
Sbjct: 682 EEPCAVCLDNPSIGDTIRRLPCFHMFHKECIDEWLRRKKLCPVCKSGIT 730



>Os02g0743700 Similar to RING-H2 finger protein ATL1Q
          Length = 220

 Score = 64.3 bits (155), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 26/58 (44%), Positives = 38/58 (65%), Gaps = 1/58 (1%)

Query: 163 DATDNTLEDELTCSVCLEQVVVGDLLRSLP-CLHQFHANCIDPWLRQQGTCPVCKHRV 219
           D T N+  ++L+C++CL+ +V G+  R LP C H FH  C+D WL   G+CPVC+  V
Sbjct: 163 DQTRNSFGEDLSCTICLQDIVTGETARRLPNCSHTFHQPCVDKWLVGHGSCPVCRQCV 220



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.320    0.132    0.412 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 6,590,947
Number of extensions: 221575
Number of successful extensions: 1205
Number of sequences better than 1.0e-10: 8
Number of HSP's gapped: 1303
Number of HSP's successfully gapped: 8
Length of query: 233
Length of database: 17,035,801
Length adjustment: 98
Effective length of query: 135
Effective length of database: 11,918,829
Effective search space: 1609041915
Effective search space used: 1609041915
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 154 (63.9 bits)