Os02g0787500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Zinc finger, RING-type domain containing protein.
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Os02g0787500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Zinc finger, RING-type domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = precipitation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 25.57 | 0.238 | 11.5 | 0.151 | 0.328 | -0.376 | 0.0672 | -2.1 | -0.314 | 4.35 | 0.2465 | 5489 | -- | -- |
| 26.37 | 0.239 | 11.4 | 0.139 | 0.319 | -0.53 | -0.00281 | -- | -0.343 | 4.22 | 0.7683 | 13563 | -- | -- |
| 25.58 | 0.236 | 11.5 | 0.151 | 0.329 | -0.374 | -- | -2.1 | -0.314 | 4.42 | 0.247 | 5488 | -- | -- |
| 26.32 | 0.239 | 11.4 | 0.148 | 0.318 | -0.597 | -- | -- | -0.333 | 4.34 | 0.8144 | 13834 | -- | -- |
| 30.81 | 0.259 | 11.5 | 0.0972 | -- | -0.448 | -- | -1.28 | -0.331 | -- | 0.1453 | 6750 | -- | -- |
| 33.03 | 0.269 | 11.4 | -0.0523 | 0.319 | -- | -0.0394 | -- | -0.283 | 4.41 | -- | -- | -- | -- |
| 33.03 | 0.269 | 11.4 | -0.0521 | 0.318 | -- | -- | -- | -0.283 | 4.37 | -- | -- | -- | -- |
| 31.81 | 0.263 | 11.4 | 0.162 | -- | -0.581 | -- | -- | -0.325 | -- | 0.8062 | 14554 | -- | -- |
| 26.82 | 0.241 | 11.4 | -- | 0.323 | -0.537 | -- | -- | -0.342 | 4.34 | 0.7824 | 13812 | -- | -- |
| 38.48 | 0.29 | 11.4 | -0.0395 | -- | -- | -- | -- | -0.274 | -- | -- | -- | -- | -- |
| 33.1 | 0.269 | 11.4 | -- | 0.317 | -- | -- | -- | -0.277 | 4.38 | -- | -- | -- | -- |
| 32.4 | 0.265 | 11.4 | -- | -- | -0.53 | -- | -- | -0.335 | -- | 0.7678 | 13822 | -- | -- |
| 38.52 | 0.29 | 11.4 | -- | -- | -- | -- | -- | -0.27 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 23.72 | wind | 3.0 | 43200 | > th | dose dependent | rect. | 6 | 1 |
| 2 | 23.87 | wind | 3.0 | 43200 | > th | dose independent | rect. | 4 | 4 |
| 3 | 23.89 | wind | 3.0 | 43200 | > th | dose independent | rect. | 6 | 2 |
| 9 | 23.96 | wind | 3.0 | 43200 | < th | dose independent | rect. | 4 | 4 |
| 13 | 23.98 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 6 | 8 |
| 16 | 23.99 | wind | 3.0 | 43200 | > th | dose independent | rect. | 1 | 8 |
| 21 | 24.01 | wind | 3.0 | 43200 | < th | dose independent | rect. | 6 | 2 |
| 27 | 24.02 | wind | 3.0 | 43200 | < th | dose independent | rect. | 1 | 8 |
| 40 | 24.07 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 6 | 11 |
| 58 | 24.15 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 6 | 11 |
| 61 | 24.15 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 6 | 11 |
| 78 | 24.26 | precipitation | 0.1 | 14400 | > th | dose independent | sin | 1 | NA |
| 85 | 24.29 | precipitation | 0.1 | 14400 | < th | dose independent | sin | 1 | NA |
| 87 | 24.29 | precipitation | 0.1 | 14400 | < th | dose dependent | sin | 1 | NA |
| 122 | 24.43 | wind | 5.0 | 43200 | < th | dose dependent | rect. | 24 | 9 |
| 126 | 24.44 | wind | 9.0 | 43200 | < th | dose dependent | rect. | 6 | 2 |
| 127 | 24.44 | wind | 9.0 | 43200 | < th | dose dependent | rect. | 5 | 4 |
| 156 | 24.50 | wind | 5.0 | 43200 | < th | dose dependent | rect. | 3 | 5 |
| 192 | 24.55 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 24 | 10 |
| 202 | 24.57 | temperature | 20.0 | 14400 | < th | dose independent | rect. | 19 | 6 |
| 205 | 24.57 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 24 | 8 |
| 208 | 24.58 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 8 | 6 |
| 225 | 24.60 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 4 | 19 |
| 226 | 24.60 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 4 | 19 |
| 235 | 24.60 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 4 | 19 |
| 241 | 24.61 | precipitation | 0.1 | 14400 | > th | dose dependent | sin | 2 | NA |
| 256 | 24.63 | temperature | 20.0 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 257 | 24.63 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 5 | 9 |
| 265 | 24.64 | temperature | 20.0 | 14400 | > th | dose independent | rect. | 18 | 7 |
| 287 | 24.65 | temperature | 20.0 | 14400 | < th | dose independent | rect. | 19 | 2 |
| 313 | 24.67 | wind | 3.0 | 43200 | > th | dose independent | sin | 7 | NA |
| 356 | 24.70 | wind | 7.0 | 14400 | < th | dose dependent | rect. | 2 | 2 |
| 416 | 24.76 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 5 | 9 |
| 420 | 24.76 | temperature | 25.0 | 14400 | < th | dose dependent | rect. | 14 | 1 |
| 424 | 24.76 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 5 | 9 |
| 446 | 24.79 | wind | 3.0 | 43200 | < th | dose independent | sin | 7 | NA |
| 492 | 24.82 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 8 | 6 |
| 499 | 24.82 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 8 | 6 |
| 575 | 24.88 | wind | 3.0 | 14400 | < th | dose independent | rect. | 24 | 1 |
| 613 | 24.90 | temperature | 25.0 | 14400 | < th | dose dependent | rect. | 13 | 6 |
| 624 | 24.91 | wind | 1.0 | 43200 | > th | dose dependent | sin | 7 | NA |
| 626 | 24.91 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 24 | 4 |
| 665 | 24.94 | wind | 3.0 | 14400 | > th | dose independent | rect. | 24 | 1 |
| 697 | 24.95 | wind | 9.0 | 43200 | < th | dose dependent | sin | 7 | NA |
| 779 | 25.00 | precipitation | 0.1 | 14400 | > th | dose independent | no | NA | NA |
| 780 | 25.00 | precipitation | 0.1 | 14400 | < th | dose independent | no | NA | NA |
| 790 | 25.00 | precipitation | 0.1 | 14400 | < th | dose dependent | no | NA | NA |
| 791 | 25.00 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 2 | 2 |
| 823 | 25.02 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 21 | 23 |
| 824 | 25.02 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 21 | 23 |
| 826 | 25.02 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 18 | 1 |
| 841 | 25.02 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 21 | 23 |
| 848 | 25.03 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 16 | 23 |
| 849 | 25.03 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 16 | 23 |
| 851 | 25.03 | temperature | 30.0 | 14400 | < th | dose dependent | rect. | 17 | 1 |
| 860 | 25.03 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 16 | 23 |
| 873 | 25.04 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 11 | 23 |
| 876 | 25.04 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 8 | 23 |
| 877 | 25.04 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 11 | 23 |
| 895 | 25.04 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 8 | 23 |
| 896 | 25.04 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 11 | 23 |
| 900 | 25.05 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 8 | 23 |
| 902 | 25.05 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 19 | 23 |
| 905 | 25.05 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 19 | 23 |
| 916 | 25.05 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 19 | 23 |
| 952 | 25.07 | wind | 9.0 | 14400 | < th | dose dependent | rect. | 24 | 4 |
| 998 | 25.09 | temperature | 10.0 | 14400 | > th | dose dependent | rect. | 13 | 1 |
| 999 | 25.09 | temperature | 10.0 | 14400 | > th | dose dependent | rect. | 17 | 1 |