Os04g0511600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to RING-H2 finger protein ATL3G.
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Os04g0511600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to RING-H2 finger protein ATL3G.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 26.62 | 0.242 | 11.2 | -0.495 | 0.458 | -0.38 | 0.000124 | -0.53 | -0.0512 | 18 | 21.7 | 3147 | -- | -- |
| 26.85 | 0.241 | 11.2 | -0.585 | 0.471 | -0.372 | -0.108 | -- | -0.0764 | 17.4 | 24.7 | 2501 | -- | -- |
| 26.49 | 0.24 | 11.2 | -0.444 | 0.466 | -0.339 | -- | -0.52 | -0.0491 | 17.9 | 22.2 | 3108 | -- | -- |
| 26.82 | 0.241 | 11.2 | -0.59 | 0.484 | -0.375 | -- | -- | -0.0782 | 17.6 | 24.8 | 2640 | -- | -- |
| 36.86 | 0.283 | 11.2 | -0.459 | -- | -0.341 | -- | -0.48 | -0.0621 | -- | 22.05 | 1982 | -- | -- |
| 30.5 | 0.259 | 11.2 | -0.457 | 0.454 | -- | 0.037 | -- | 0.0286 | 18 | -- | -- | -- | -- |
| 30.5 | 0.259 | 11.2 | -0.457 | 0.455 | -- | -- | -- | 0.0287 | 18 | -- | -- | -- | -- |
| 36.81 | 0.283 | 11.2 | -0.628 | -- | -0.413 | -- | -- | -0.0912 | -- | 24.8 | 3505 | -- | -- |
| 35.12 | 0.276 | 11.2 | -- | 0.466 | -0.145 | -- | -- | 0.026 | 17.8 | 23.6 | 2472 | -- | -- |
| 41.22 | 0.3 | 11.2 | -0.47 | -- | -- | -- | -- | 0.0184 | -- | -- | -- | -- | -- |
| 36.01 | 0.281 | 11.2 | -- | 0.461 | -- | -- | -- | 0.0796 | 18 | -- | -- | -- | -- |
| 41.15 | 0.299 | 11.2 | -- | -- | -0.301 | -- | -- | -0.0169 | -- | 25.7 | 407 | -- | -- |
| 47.05 | 0.32 | 11.2 | -- | -- | -- | -- | -- | 0.0706 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 24.23 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 17 | 15 |
| 3 | 24.42 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 15 | 13 |
| 11 | 24.73 | temperature | 20.0 | 270 | > th | dose dependent | sin | 12 | NA |
| 32 | 24.90 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 16 | 15 |
| 44 | 25.03 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 19 | 11 |
| 48 | 25.05 | temperature | 15.0 | 10 | > th | dose dependent | sin | 10 | NA |
| 67 | 25.20 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 16 | 9 |
| 95 | 25.33 | temperature | 30.0 | 90 | < th | dose dependent | sin | 11 | NA |
| 96 | 25.33 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 21 | 7 |
| 146 | 25.55 | temperature | 30.0 | 10 | < th | dose dependent | sin | 10 | NA |
| 213 | 25.82 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 18 | 9 |
| 243 | 25.93 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 13 | 12 |
| 270 | 26.00 | temperature | 25.0 | 4320 | > th | dose independent | rect. | 23 | 2 |
| 280 | 26.02 | temperature | 25.0 | 4320 | < th | dose independent | rect. | 22 | 5 |
| 281 | 26.02 | temperature | 10.0 | 4320 | > th | dose dependent | rect. | 24 | 1 |
| 292 | 26.03 | temperature | 30.0 | 4320 | < th | dose dependent | rect. | 24 | 3 |
| 302 | 26.04 | temperature | 30.0 | 4320 | < th | dose dependent | rect. | 1 | 1 |
| 315 | 26.05 | temperature | 25.0 | 4320 | < th | dose independent | rect. | 23 | 2 |
| 333 | 26.06 | temperature | 25.0 | 270 | < th | dose dependent | rect. | 23 | 4 |
| 386 | 26.11 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 21 | 2 |
| 389 | 26.11 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 21 | 2 |
| 400 | 26.12 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 21 | 2 |
| 419 | 26.14 | wind | 9.0 | 14400 | > th | dose dependent | rect. | 11 | 2 |
| 455 | 26.18 | temperature | 25.0 | 270 | > th | dose independent | rect. | 15 | 17 |
| 465 | 26.19 | wind | 9.0 | 14400 | < th | dose independent | rect. | 9 | 4 |
| 491 | 26.21 | wind | 1.0 | 14400 | < th | dose independent | rect. | 21 | 2 |
| 515 | 26.23 | wind | 9.0 | 14400 | > th | dose independent | rect. | 6 | 7 |
| 516 | 26.23 | wind | 9.0 | 14400 | < th | dose independent | rect. | 6 | 7 |
| 565 | 26.27 | wind | 9.0 | 14400 | > th | dose independent | rect. | 10 | 3 |
| 570 | 26.27 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 21 | 2 |
| 628 | 26.30 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 22 | 1 |
| 670 | 26.33 | temperature | 20.0 | 10 | > th | dose independent | rect. | 18 | 15 |
| 736 | 26.37 | temperature | 25.0 | 4320 | < th | dose independent | rect. | 2 | 1 |
| 909 | 26.45 | temperature | 25.0 | 4320 | < th | dose dependent | sin | 13 | NA |
| 988 | 26.48 | temperature | 25.0 | 270 | > th | dose independent | rect. | 15 | 10 |