BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os04g0511600 Os04g0511600|AK073609
         (730 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os04g0511600  Similar to RING-H2 finger protein ATL3G            1363   0.0  

>Os04g0511600 Similar to RING-H2 finger protein ATL3G
          Length = 730

 Score = 1363 bits (3529), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 675/730 (92%), Positives = 675/730 (92%)

Query: 1   MVDINPDHIFEVPDTPDRIQQSTCPVSSPAARRGIAKAAGTPLPSRRIKFKITNNSIQGQ 60
           MVDINPDHIFEVPDTPDRIQQSTCPVSSPAARRGIAKAAGTPLPSRRIKFKITNNSIQGQ
Sbjct: 1   MVDINPDHIFEVPDTPDRIQQSTCPVSSPAARRGIAKAAGTPLPSRRIKFKITNNSIQGQ 60

Query: 61  SSRGNASSVSPAPLDAGDIFKQAELARLLPVAEDPEARSSLLKSGRTIETSVENEKVPKK 120
           SSRGNASSVSPAPLDAGDIFKQAELARLLPVAEDPEARSSLLKSGRTIETSVENEKVPKK
Sbjct: 61  SSRGNASSVSPAPLDAGDIFKQAELARLLPVAEDPEARSSLLKSGRTIETSVENEKVPKK 120

Query: 121 SGLDQSMNISNNINCRGSGERDRSCQIRKGDISARDANSCNADFLCLGSGLPTTTVGKPR 180
           SGLDQSMNISNNINCRGSGERDRSCQIRKGDISARDANSCNADFLCLGSGLPTTTVGKPR
Sbjct: 121 SGLDQSMNISNNINCRGSGERDRSCQIRKGDISARDANSCNADFLCLGSGLPTTTVGKPR 180

Query: 181 NRMGTITFKKPKEVVGANVCSVSSPREGKGEEITDKXXXXXXXXXXXXVPQRHVGQRKLV 240
           NRMGTITFKKPKEVVGANVCSVSSPREGKGEEITDK            VPQRHVGQRKLV
Sbjct: 181 NRMGTITFKKPKEVVGANVCSVSSPREGKGEEITDKGTTGISSSTPSIVPQRHVGQRKLV 240

Query: 241 RNGCISPSNIAKRSLKVDEKREICSTSGLLHYPDTQVDASGKGNVIDLTDSSPIIRRQGN 300
           RNGCISPSNIAKRSLKVDEKREICSTSGLLHYPDTQVDASGKGNVIDLTDSSPIIRRQGN
Sbjct: 241 RNGCISPSNIAKRSLKVDEKREICSTSGLLHYPDTQVDASGKGNVIDLTDSSPIIRRQGN 300

Query: 301 TATDMEKRSGRKSAIGRAGETVIPLAANQVNSIFSEGNKNKGKEISHDVVGAKQSGEAYM 360
           TATDMEKRSGRKSAIGRAGETVIPLAANQVNSIFSEGNKNKGKEISHDVVGAKQSGEAYM
Sbjct: 301 TATDMEKRSGRKSAIGRAGETVIPLAANQVNSIFSEGNKNKGKEISHDVVGAKQSGEAYM 360

Query: 361 RRVCPRSMGDSSSVANNDHTGIGSEQGWRTTHNNTSNIPMPLSGKMTNSCGRESGSSEQS 420
           RRVCPRSMGDSSSVANNDHTGIGSEQGWRTTHNNTSNIPMPLSGKMTNSCGRESGSSEQS
Sbjct: 361 RRVCPRSMGDSSSVANNDHTGIGSEQGWRTTHNNTSNIPMPLSGKMTNSCGRESGSSEQS 420

Query: 421 NLDRASAAGDSNNSIEGGDNNNSIGGAKTLQTASFVNRTXXXXXXXXXXXXXXYHPGESS 480
           NLDRASAAGDSNNSIEGGDNNNSIGGAKTLQTASFVNRT              YHPGESS
Sbjct: 421 NLDRASAAGDSNNSIEGGDNNNSIGGAKTLQTASFVNRTIRISSRKRKRIASSYHPGESS 480

Query: 481 SSVDVDQPRVASSDSXXXXXXXXXXXXIPVVDIDDICSPEVRPSLSGIGSSNRTSVDPNI 540
           SSVDVDQPRVASSDS            IPVVDIDDICSPEVRPSLSGIGSSNRTSVDPNI
Sbjct: 481 SSVDVDQPRVASSDSTAARNHTTHRHHIPVVDIDDICSPEVRPSLSGIGSSNRTSVDPNI 540

Query: 541 REQLESDELLARQLQEQLYNETPHVVPTEEIDAIIAMSLQHEDNAQPTSRTARRFQSTTR 600
           REQLESDELLARQLQEQLYNETPHVVPTEEIDAIIAMSLQHEDNAQPTSRTARRFQSTTR
Sbjct: 541 REQLESDELLARQLQEQLYNETPHVVPTEEIDAIIAMSLQHEDNAQPTSRTARRFQSTTR 600

Query: 601 GPRVLRSTVPQHANRVRYDSNNRRIIYQRALSRYPAAHIQPXXXXXXXXXXXXXXXXXHQ 660
           GPRVLRSTVPQHANRVRYDSNNRRIIYQRALSRYPAAHIQP                 HQ
Sbjct: 601 GPRVLRSTVPQHANRVRYDSNNRRIIYQRALSRYPAAHIQPNIDLNDYDALLALDENNHQ 660

Query: 661 HAGASESQINNLPQSVIQSNIEEPCAVCLDNPSIGDTIRRLPCFHMFHKECIDEWLRRKK 720
           HAGASESQINNLPQSVIQSNIEEPCAVCLDNPSIGDTIRRLPCFHMFHKECIDEWLRRKK
Sbjct: 661 HAGASESQINNLPQSVIQSNIEEPCAVCLDNPSIGDTIRRLPCFHMFHKECIDEWLRRKK 720

Query: 721 LCPVCKSGIT 730
           LCPVCKSGIT
Sbjct: 721 LCPVCKSGIT 730



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.312    0.128    0.368 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 24,014,877
Number of extensions: 1027961
Number of successful extensions: 2771
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 2849
Number of HSP's successfully gapped: 1
Length of query: 730
Length of database: 17,035,801
Length adjustment: 108
Effective length of query: 622
Effective length of database: 11,396,689
Effective search space: 7088740558
Effective search space used: 7088740558
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 160 (66.2 bits)