Os09g0468300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Zinc finger, RING-type domain containing protein.
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Os09g0468300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Zinc finger, RING-type domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 77.6 | 0.414 | 9.36 | 1.14 | 1.68 | 1.27 | 0.357 | -0.908 | 0.315 | 10.3 | 0.12 | 288 | -- | -- |
| 78.71 | 0.413 | 9.37 | 1.14 | 1.53 | 1.33 | 1.21 | -- | 0.348 | 10.6 | 0.08754 | 339 | -- | -- |
| 77.89 | 0.411 | 9.36 | 1.17 | 1.74 | 1.39 | -- | -1.04 | 0.329 | 10.6 | 0.12 | 293 | -- | -- |
| 83.49 | 0.426 | 9.36 | 1.17 | 1.66 | 1.41 | -- | -- | 0.322 | 10.8 | 0.12 | 330 | -- | -- |
| 91.67 | 0.446 | 9.44 | 1.02 | -- | 1.96 | -- | 0.107 | 0.0896 | -- | 0.009107 | 779 | -- | -- |
| 92.15 | 0.45 | 9.38 | 0.992 | 1.5 | -- | 0.673 | -- | 0.257 | 6.76 | -- | -- | -- | -- |
| 93.24 | 0.452 | 9.38 | 1 | 1.5 | -- | -- | -- | 0.254 | 6.68 | -- | -- | -- | -- |
| 84.81 | 0.429 | 9.43 | 1.22 | -- | 2.21 | -- | -- | 0.305 | -- | 0.09989 | 838 | -- | -- |
| 117.85 | 0.506 | 9.38 | -- | 1.6 | 1.24 | -- | -- | 0.151 | 10.3 | 0.12 | 330 | -- | -- |
| 210.68 | 0.678 | 9.41 | 1.04 | -- | -- | -- | -- | 0.284 | -- | -- | -- | -- | -- |
| 119.68 | 0.512 | 9.41 | -- | 1.51 | -- | -- | -- | 0.143 | 6.64 | -- | -- | -- | -- |
| 123.73 | 0.518 | 9.43 | -- | -- | 1.99 | -- | -- | 0.206 | -- | 1.656 | 823 | -- | -- |
| 239.02 | 0.722 | 9.44 | -- | -- | -- | -- | -- | 0.169 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 77.02 | radiation | 10 | 1440 | < th | dose independent | rect. | 19 | 10 |
| 3 | 77.23 | radiation | 1 | 270 | < th | dose dependent | rect. | 9 | 7 |
| 5 | 77.35 | humidity | 80 | 270 | < th | dose independent | rect. | 7 | 14 |
| 6 | 77.39 | radiation | 1 | 270 | < th | dose independent | rect. | 10 | 7 |
| 9 | 77.51 | humidity | 80 | 90 | > th | dose independent | rect. | 11 | 20 |
| 16 | 77.63 | radiation | 1 | 720 | < th | dose independent | rect. | 9 | 3 |
| 17 | 77.63 | radiation | 1 | 720 | < th | dose dependent | rect. | 9 | 3 |
| 30 | 77.90 | radiation | 1 | 720 | < th | dose independent | rect. | 10 | 1 |
| 31 | 77.90 | radiation | 1 | 720 | < th | dose dependent | rect. | 10 | 1 |
| 33 | 77.96 | radiation | 1 | 270 | < th | dose dependent | rect. | 19 | 23 |
| 79 | 78.53 | humidity | 80 | 270 | < th | dose independent | sin | 22 | NA |
| 80 | 78.53 | radiation | 1 | 270 | < th | dose independent | rect. | 19 | 23 |
| 109 | 78.80 | humidity | 80 | 10 | < th | dose independent | rect. | 8 | 13 |
| 124 | 78.87 | radiation | 10 | 1440 | < th | dose dependent | rect. | 19 | 10 |
| 140 | 78.96 | humidity | 80 | 30 | > th | dose independent | rect. | 21 | 23 |
| 212 | 79.26 | humidity | 80 | 30 | < th | dose independent | rect. | 16 | 23 |
| 213 | 79.26 | radiation | 1 | 270 | < th | dose dependent | rect. | 8 | 22 |
| 242 | 79.33 | humidity | 80 | 30 | < th | dose independent | rect. | 22 | 23 |
| 264 | 79.39 | humidity | 80 | 30 | < th | dose independent | sin | 20 | NA |
| 273 | 79.41 | humidity | 80 | 270 | < th | dose independent | no | NA | NA |
| 292 | 79.46 | humidity | 80 | 270 | < th | dose independent | rect. | 14 | 23 |
| 300 | 79.47 | wind | 1 | 43200 | < th | dose dependent | rect. | 6 | 2 |
| 317 | 79.51 | radiation | 1 | 720 | > th | dose independent | rect. | 7 | 8 |
| 332 | 79.55 | radiation | 1 | 270 | < th | dose dependent | sin | 23 | NA |
| 381 | 79.66 | humidity | 80 | 30 | < th | dose independent | no | NA | NA |
| 402 | 79.72 | humidity | 80 | 270 | < th | dose independent | rect. | 11 | 23 |
| 411 | 79.74 | radiation | 1 | 270 | > th | dose independent | rect. | 6 | 13 |
| 430 | 79.75 | radiation | 1 | 270 | < th | dose dependent | no | NA | NA |
| 439 | 79.77 | radiation | 1 | 270 | < th | dose dependent | rect. | 1 | 23 |
| 463 | 79.82 | radiation | 1 | 270 | < th | dose dependent | rect. | 11 | 23 |
| 465 | 79.83 | radiation | 1 | 270 | < th | dose independent | rect. | 8 | 22 |
| 475 | 79.86 | wind | 1 | 43200 | > th | dose independent | rect. | 7 | 1 |
| 489 | 79.89 | humidity | 80 | 30 | > th | dose independent | rect. | 1 | 23 |
| 509 | 79.93 | humidity | 80 | 270 | > th | dose independent | rect. | 11 | 10 |
| 515 | 79.95 | humidity | 80 | 270 | > th | dose independent | rect. | 11 | 6 |
| 544 | 80.06 | radiation | 1 | 270 | < th | dose dependent | rect. | 15 | 1 |
| 546 | 80.08 | wind | 1 | 43200 | < th | dose independent | rect. | 7 | 1 |
| 560 | 80.13 | radiation | 1 | 270 | > th | dose independent | rect. | 14 | 23 |
| 568 | 80.16 | radiation | 1 | 720 | < th | dose dependent | rect. | 6 | 17 |
| 581 | 80.21 | humidity | 80 | 30 | > th | dose independent | rect. | 13 | 23 |
| 591 | 80.24 | humidity | 80 | 30 | > th | dose independent | no | NA | NA |
| 596 | 80.26 | humidity | 80 | 270 | > th | dose independent | rect. | 19 | 23 |
| 598 | 80.27 | humidity | 80 | 30 | > th | dose independent | rect. | 15 | 23 |
| 601 | 80.29 | humidity | 80 | 30 | > th | dose independent | rect. | 17 | 23 |
| 602 | 80.29 | humidity | 80 | 30 | > th | dose independent | rect. | 19 | 23 |
| 618 | 80.33 | radiation | 1 | 720 | < th | dose dependent | rect. | 4 | 19 |
| 657 | 80.54 | humidity | 80 | 30 | < th | dose independent | rect. | 18 | 23 |
| 688 | 80.72 | humidity | 80 | 270 | > th | dose independent | no | NA | NA |
| 723 | 80.85 | humidity | 80 | 720 | < th | dose independent | rect. | 7 | 8 |
| 727 | 80.86 | radiation | 1 | 720 | < th | dose independent | rect. | 8 | 15 |
| 742 | 80.88 | humidity | 80 | 270 | > th | dose independent | sin | 19 | NA |
| 743 | 80.88 | humidity | 80 | 720 | < th | dose independent | rect. | 8 | 6 |
| 751 | 80.91 | humidity | 80 | 30 | < th | dose independent | rect. | 14 | 23 |
| 758 | 80.95 | radiation | 10 | 1440 | < th | dose independent | rect. | 4 | 1 |
| 776 | 81.00 | humidity | 80 | 1440 | < th | dose independent | rect. | 23 | 3 |
| 787 | 81.02 | radiation | 1 | 270 | < th | dose independent | no | NA | NA |
| 804 | 81.05 | radiation | 1 | 270 | > th | dose independent | no | NA | NA |
| 868 | 81.10 | radiation | 1 | 270 | < th | dose independent | rect. | 11 | 23 |
| 875 | 81.12 | radiation | 1 | 270 | < th | dose independent | sin | 23 | NA |
| 876 | 81.12 | humidity | 80 | 30 | > th | dose independent | rect. | 4 | 23 |
| 887 | 81.15 | humidity | 80 | 1440 | < th | dose dependent | rect. | 23 | 3 |
| 894 | 81.17 | radiation | 1 | 270 | < th | dose independent | rect. | 1 | 23 |
| 898 | 81.18 | temperature | 25 | 270 | > th | dose independent | rect. | 8 | 11 |
| 921 | 81.23 | humidity | 60 | 14400 | > th | dose independent | rect. | 19 | 1 |
| 967 | 81.34 | radiation | 1 | 1440 | > th | dose independent | rect. | 4 | 1 |
| 978 | 81.34 | radiation | 1 | 1440 | > th | dose dependent | rect. | 4 | 1 |
| 990 | 81.36 | radiation | 10 | 1440 | < th | dose independent | rect. | 1 | 4 |