Os09g0542600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to RING-H2 finger protein ATL1I.
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Os09g0542600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to RING-H2 finger protein ATL1I.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 318.37 | 0.838 | 3.06 | 0.202 | 0.451 | 0.904 | 0.456 | 3.14 | -0.162 | 4.3 | 30.6 | 12 | -- | -- |
| 318.27 | 0.837 | 3.08 | 0.0143 | 0.439 | 1.25 | 0.398 | -- | -0.163 | 4.15 | 30.96 | 18 | -- | -- |
| 318.86 | 0.832 | 3.06 | 0.192 | 0.45 | 0.899 | -- | 3.01 | -0.165 | 4.22 | 30.61 | 14 | -- | -- |
| 318.57 | 0.831 | 3.08 | 0.00564 | 0.446 | 1.27 | -- | -- | -0.166 | 4.15 | 30.9 | 9 | -- | -- |
| 328.87 | 0.845 | 3.07 | 0.179 | -- | 0.825 | -- | 2.17 | -0.165 | -- | 30.8 | 13 | -- | -- |
| 354.66 | 0.883 | 3.1 | 0.117 | 0.215 | -- | -0.0111 | -- | -0.247 | 4.8 | -- | -- | -- | -- |
| 354.66 | 0.882 | 3.1 | 0.117 | 0.215 | -- | -- | -- | -0.247 | 4.81 | -- | -- | -- | -- |
| 328.35 | 0.848 | 3.09 | 0.0425 | -- | 1.06 | -- | -- | -0.167 | -- | 30.9 | 11 | -- | -- |
| 318.57 | 0.831 | 3.08 | -- | 0.447 | 1.27 | -- | -- | -0.166 | 4.15 | 30.91 | 9 | -- | -- |
| 357.1 | 0.883 | 3.1 | 0.125 | -- | -- | -- | -- | -0.241 | -- | -- | -- | -- | -- |
| 355.02 | 0.881 | 3.11 | -- | 0.217 | -- | -- | -- | -0.26 | 4.79 | -- | -- | -- | -- |
| 328.39 | 0.847 | 3.09 | -- | -- | 1.06 | -- | -- | -0.172 | -- | 30.93 | 11 | -- | -- |
| 357.51 | 0.883 | 3.11 | -- | -- | -- | -- | -- | -0.255 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 311.49 | temperature | 30 | 10 | > th | dose dependent | rect. | 17 | 21 |
| 3 | 312.65 | temperature | 30 | 10 | > th | dose dependent | sin | 9 | NA |
| 12 | 318.70 | temperature | 30 | 30 | < th | dose independent | rect. | 19 | 23 |
| 13 | 318.74 | temperature | 25 | 1440 | > th | dose dependent | rect. | 11 | 1 |
| 14 | 318.87 | temperature | 30 | 10 | > th | dose independent | rect. | 9 | 9 |
| 44 | 320.46 | temperature | 25 | 1440 | > th | dose independent | rect. | 20 | 1 |
| 45 | 320.48 | temperature | 30 | 10 | > th | dose independent | sin | 1 | NA |
| 50 | 320.81 | temperature | 30 | 10 | > th | dose independent | rect. | 17 | 22 |
| 56 | 321.01 | temperature | 25 | 1440 | < th | dose independent | rect. | 19 | 2 |
| 76 | 321.74 | temperature | 25 | 720 | > th | dose dependent | rect. | 7 | 1 |
| 77 | 321.78 | temperature | 30 | 90 | > th | dose independent | sin | 3 | NA |
| 101 | 322.06 | wind | 1 | 30 | < th | dose dependent | rect. | 22 | 4 |
| 117 | 322.35 | temperature | 30 | 10 | > th | dose dependent | rect. | 9 | 9 |
| 141 | 322.57 | temperature | 30 | 90 | < th | dose independent | sin | 2 | NA |
| 164 | 322.83 | temperature | 30 | 90 | < th | dose independent | rect. | 5 | 11 |
| 174 | 322.98 | temperature | 30 | 30 | < th | dose independent | rect. | 5 | 23 |
| 178 | 323.10 | temperature | 30 | 270 | > th | dose independent | rect. | 9 | 2 |
| 185 | 323.20 | temperature | 30 | 10 | > th | dose dependent | no | NA | NA |
| 295 | 323.28 | radiation | 10 | 720 | > th | dose dependent | rect. | 17 | 14 |
| 304 | 323.43 | temperature | 25 | 1440 | > th | dose dependent | sin | 4 | NA |
| 306 | 323.44 | radiation | 20 | 720 | > th | dose independent | rect. | 7 | 1 |
| 322 | 323.64 | temperature | 30 | 10 | > th | dose dependent | rect. | 11 | 23 |
| 344 | 323.85 | temperature | 10 | 1440 | > th | dose dependent | rect. | 9 | 3 |
| 350 | 323.88 | temperature | 30 | 270 | > th | dose independent | sin | 6 | NA |
| 354 | 323.91 | radiation | 20 | 720 | > th | dose dependent | rect. | 7 | 1 |
| 385 | 324.08 | temperature | 30 | 1440 | < th | dose dependent | rect. | 9 | 2 |
| 395 | 324.14 | temperature | 30 | 10 | > th | dose dependent | rect. | 13 | 23 |
| 429 | 324.33 | temperature | 20 | 90 | > th | dose dependent | rect. | 22 | 21 |
| 430 | 324.36 | radiation | 10 | 720 | < th | dose independent | rect. | 23 | 8 |
| 442 | 324.46 | temperature | 30 | 10 | > th | dose independent | no | NA | NA |
| 584 | 324.63 | temperature | 30 | 270 | < th | dose independent | rect. | 3 | 11 |
| 607 | 324.70 | temperature | 30 | 10 | > th | dose dependent | rect. | 9 | 5 |
| 632 | 324.77 | temperature | 30 | 10 | > th | dose independent | rect. | 11 | 23 |
| 642 | 324.79 | wind | 1 | 10 | < th | dose dependent | rect. | 15 | 12 |
| 651 | 324.84 | temperature | 30 | 10 | > th | dose independent | rect. | 13 | 23 |
| 669 | 324.92 | wind | 1 | 10 | < th | dose dependent | rect. | 11 | 16 |
| 726 | 325.32 | temperature | 20 | 30 | > th | dose dependent | rect. | 2 | 17 |
| 871 | 325.51 | temperature | 20 | 30 | > th | dose dependent | rect. | 4 | 15 |