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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os06g0535200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Zinc finger, RING-type domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.17 (0.0341) R2 : 0.203
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.955 (0.0889) R2dC : 0.203 R2C : 0.202
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0541 (0.0717) R2dN8 : 0.00129 R2N8 : 0.000442
σ : 0.642
deviance : 188.56
__
_____
C
peak time of C : 18.8
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
167.07 0.607 5.15 0.19 1.08 -0.703 0.414 0.611 -0.0462 16.2 10.89 10 -- --
168.88 0.605 5.15 0.21 1.07 -0.702 0.772 -- -0.0452 16.1 10.88 9 -- --
167.47 0.603 5.15 0.19 1.09 -0.702 -- 0.73 -0.0441 16.2 10.89 9 -- --
170.63 0.608 5.15 0.217 1.09 -0.697 -- -- -0.0429 16.2 10.89 9 -- --
218.67 0.689 5.14 0.0861 -- -0.38 -- 0.842 -0.0597 -- 13.59 9 -- --
187.9 0.643 5.16 0.152 0.956 -- 0.166 -- -0.0379 18.8 -- -- -- --
187.97 0.642 5.16 0.149 0.957 -- -- -- -0.0375 18.8 -- -- -- --
222.39 0.695 5.14 0.146 -- -0.376 -- -- -0.062 -- 12.59 7 -- --
171.52 0.61 5.16 -- 1.08 -0.689 -- -- -0.0683 16.2 10.87 7 -- --
235.87 0.718 5.14 0.128 -- -- -- -- -0.056 -- -- -- -- --
188.56 0.642 5.17 -- 0.955 -- -- -- -0.0541 18.8 -- -- -- --
222.63 0.695 5.15 -- -- -0.381 -- -- -0.0722 -- 13.98 5 -- --
236.3 0.718 5.14 -- -- -- -- -- -0.0702 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 160.37 radiation 10 90 < th dose dependent rect. 5 12
2 160.45 radiation 10 10 < th dose independent rect. 5 15
3 160.49 radiation 20 10 < th dose dependent rect. 5 15
8 161.49 temperature 10 270 > th dose dependent rect. 23 9
9 161.52 humidity 90 14400 > th dose dependent rect. 1 7
11 161.65 radiation 20 90 < th dose independent rect. 13 20
13 161.70 humidity 90 14400 > th dose dependent rect. 3 4
22 162.34 humidity 90 14400 > th dose independent rect. 2 5
23 162.35 radiation 40 90 < th dose dependent rect. 13 20
26 162.43 radiation 30 10 < th dose dependent rect. 13 22
33 162.51 humidity 90 14400 > th dose dependent rect. 20 10
82 163.62 radiation 10 10 < th dose dependent sin 22 NA
106 164.13 humidity 90 14400 > th dose dependent sin 9 NA
109 164.16 radiation 20 10 < th dose independent rect. 12 22
121 164.30 temperature 10 270 > th dose dependent rect. 1 7
145 164.61 humidity 90 14400 > th dose dependent rect. 1 1
149 164.63 radiation 20 10 < th dose dependent rect. 21 23
150 164.65 temperature 15 90 > th dose independent rect. 5 14
180 165.00 atmosphere 995 14400 > th dose independent rect. 12 2
188 165.10 radiation 10 10 < th dose independent sin 22 NA
190 165.11 radiation 20 10 < th dose dependent rect. 23 23
208 165.35 wind 1 90 > th dose independent rect. 9 19
209 165.36 radiation 20 10 < th dose independent rect. 23 23
224 165.51 radiation 10 10 < th dose independent rect. 21 23
228 165.59 wind 1 90 > th dose independent rect. 19 9
240 165.66 atmosphere 1005 90 > th dose dependent rect. 10 13
243 165.67 radiation 10 10 > th dose independent rect. 9 23
261 165.80 radiation 10 10 < th dose independent rect. 5 22
262 165.80 radiation 10 10 < th dose dependent rect. 6 10
276 165.88 radiation 20 10 < th dose dependent rect. 5 22
289 166.08 temperature 15 4320 > th dose independent rect. 7 1
291 166.09 temperature 15 90 > th dose independent rect. 12 23
317 166.32 atmosphere 995 90 > th dose dependent rect. 9 19
325 166.35 radiation 20 90 < th dose dependent rect. 5 4
327 166.36 temperature 15 270 > th dose independent rect. 12 19
356 166.54 humidity 80 270 > th dose independent rect. 1 6
357 166.54 atmosphere 1010 90 < th dose independent rect. 5 15
363 166.58 radiation 10 10 < th dose independent rect. 5 11
385 166.78 radiation 20 10 < th dose independent rect. 23 21
391 166.84 humidity 70 90 > th dose dependent rect. 5 4
413 166.97 atmosphere 995 270 > th dose dependent rect. 7 19
416 166.99 humidity 80 90 > th dose independent rect. 5 4
417 167.03 radiation 10 10 > th dose independent sin 23 NA
444 167.21 humidity 90 14400 > th dose independent rect. 20 10
453 167.25 radiation 40 270 < th dose independent rect. 12 7
458 167.26 temperature 25 720 < th dose dependent rect. 1 1
469 167.36 radiation 10 10 > th dose independent rect. 7 11
483 167.36 radiation 20 10 < th dose dependent rect. 13 7
511 167.45 temperature 25 720 < th dose dependent rect. 23 5
526 167.53 temperature 15 270 > th dose dependent rect. 4 2
541 167.58 temperature 25 720 < th dose dependent rect. 24 3
556 167.63 humidity 50 14400 > th dose dependent rect. 2 4
572 167.68 atmosphere 1005 90 > th dose dependent rect. 10 18
594 167.76 wind 7 1440 > th dose independent rect. 1 7
596 167.76 atmosphere 995 10 > th dose dependent rect. 10 19
612 167.82 radiation 10 10 > th dose independent rect. 17 23
615 167.83 humidity 80 270 > th dose independent rect. 23 9
629 167.88 radiation 10 10 > th dose independent no NA NA
719 167.93 atmosphere 995 270 > th dose dependent rect. 8 15
742 167.98 temperature 30 270 < th dose dependent rect. 22 14
745 167.99 temperature 15 1440 > th dose independent rect. 21 9
764 168.05 radiation 20 10 < th dose dependent rect. 23 21
767 168.06 radiation 20 90 < th dose dependent rect. 4 23
787 168.14 temperature 10 30 > th dose dependent rect. 5 15
788 168.14 atmosphere 1005 30 > th dose dependent rect. 11 15
789 168.15 radiation 20 90 < th dose independent rect. 4 5
793 168.16 radiation 10 270 < th dose independent rect. 4 3
840 168.33 temperature 15 10 > th dose independent rect. 13 22
843 168.35 temperature 15 270 > th dose independent rect. 12 8
848 168.36 atmosphere 1010 270 < th dose independent rect. 12 8
861 168.42 atmosphere 995 90 > th dose dependent rect. 10 15
862 168.43 humidity 80 10 > th dose independent rect. 5 5
880 168.49 radiation 30 10 < th dose dependent rect. 5 6
891 168.53 temperature 15 270 > th dose independent rect. 23 9
924 168.64 humidity 50 270 > th dose dependent rect. 2 5
941 168.69 humidity 50 270 > th dose independent rect. 7 19
944 168.69 temperature 10 270 > th dose dependent rect. 12 21
945 168.70 humidity 70 90 > th dose independent rect. 19 10
996 168.76 humidity 90 14400 < th dose independent rect. 2 5
997 168.76 radiation 20 270 < th dose independent rect. 2 5