BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os06g0535200 Os06g0535200|AK109943
(223 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os06g0535200 Zinc finger, RING-type domain containing protein 257 5e-69
Os06g0537300 79 2e-15
Os06g0540400 Zinc finger, RING-type domain containing protein 79 3e-15
Os06g0539800 77 1e-14
Os02g0249200 75 3e-14
Os06g0534900 Zinc finger, RING-type domain containing protein 74 7e-14
Os02g0248280 74 1e-13
Os02g0249101 72 4e-13
Os02g0247900 72 4e-13
Os12g0433100 Zinc finger, RING-type domain containing protein 71 7e-13
Os12g0432600 Zinc finger, RING-type domain containing protein 70 8e-13
Os01g0213200 70 1e-12
Os10g0544600 Fibrillarin family protein 70 2e-12
Os09g0468300 Zinc finger, RING-type domain containing protein 69 4e-12
Os02g0743700 Similar to RING-H2 finger protein ATL1Q 69 4e-12
Os08g0550400 Similar to RING-H2 finger protein ATL5P 68 4e-12
Os02g0559800 E3 ubiquitin ligase EL5 (EC 6.3.2.-) 67 7e-12
Os02g0561400 67 8e-12
Os02g0561000 67 8e-12
Os02g0560600 67 8e-12
Os02g0560200 67 8e-12
Os03g0340100 67 1e-11
Os06g0540200 67 1e-11
Os02g0248900 67 1e-11
Os01g0212700 Zinc finger, RING-type domain containing protein 66 2e-11
Os01g0755700 Zinc finger, RING-type domain containing protein 66 3e-11
Os06g0536100 65 3e-11
Os06g0536600 65 4e-11
Os02g0832150 Zinc finger, RING-type domain containing protein 65 4e-11
Os09g0542600 Similar to RING-H2 finger protein ATL1I 65 4e-11
Os02g0248320 Zinc finger, RING-type domain containing protein 65 4e-11
Os06g0537600 Zinc finger, RING-type domain containing protein 65 6e-11
Os01g0213100 64 8e-11
Os07g0146300 64 8e-11
Os03g0391100 64 9e-11
Os08g0484200 Zinc finger, RING-type domain containing protein 64 9e-11
>Os06g0535200 Zinc finger, RING-type domain containing protein
Length = 223
Score = 257 bits (656), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 139/210 (66%), Positives = 139/210 (66%)
Query: 1 MSPLLSDKCXXXXXXXXXXPAPVESPWLTMRAMRRVXXXXXXXXQRSALMVASYPXXXXX 60
MSPLLSDKC PAPVESPWLTMRAMRRV QRSALMVASYP
Sbjct: 1 MSPLLSDKCRRARAAMSSSPAPVESPWLTMRAMRRVGGADGGGGQRSALMVASYPVLLLL 60
Query: 61 XXXAAFVKYVWIXXXXXXXXXXXXXXXXXXXXXXERLPSPLXXXXXXXXVAAVTAAEELQ 120
AAFVKYVWI ERLPSPL VAAVTAAEELQ
Sbjct: 61 VVLAAFVKYVWIALALYSALLLLFSCASRRLALAERLPSPLGGGGGGGGVAAVTAAEELQ 120
Query: 121 GAAARGGVSGETLASIPAFAYDXXXXXXXXXXXXXXXVCLEALRGGETARRLPSCAHTFH 180
GAAARGGVSGETLASIPAFAYD VCLEALRGGETARRLPSCAHTFH
Sbjct: 121 GAAARGGVSGETLASIPAFAYDASAHGGGGEAAAQCAVCLEALRGGETARRLPSCAHTFH 180
Query: 181 VACIDMWLGSHATCPVCRRRVERKHKGGVL 210
VACIDMWLGSHATCPVCRRRVERKHKGGVL
Sbjct: 181 VACIDMWLGSHATCPVCRRRVERKHKGGVL 210
>Os06g0537300
Length = 174
Score = 79.3 bits (194), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 42/93 (45%), Positives = 49/93 (52%), Gaps = 3/93 (3%)
Query: 110 VAAVTAAEELQGAAARGGVSGETLASIPAFAYDXXXXXXXXXXXXXXXVCLEALRGGETA 169
V A A + G G + A IP FAY VCL A++GGE
Sbjct: 59 VVAAEGAGSVGGREDDGRGVADVAAKIPEFAY---AGSARHGGGGECSVCLGAVQGGEAV 115
Query: 170 RRLPSCAHTFHVACIDMWLGSHATCPVCRRRVE 202
RRLP+C H +HV CIDMWL SHATCP+CR VE
Sbjct: 116 RRLPACKHLYHVECIDMWLASHATCPICRTEVE 148
>Os06g0540400 Zinc finger, RING-type domain containing protein
Length = 168
Score = 78.6 bits (192), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 38/69 (55%), Positives = 42/69 (60%), Gaps = 2/69 (2%)
Query: 134 ASIPAFAYDXXXXXXXXXXXXXXXVCLEALRGGETARRLPSCAHTFHVACIDMWLGSHAT 193
A IP FAY VCL A+RGGE RRLP+C H +HV CIDMWL SHAT
Sbjct: 84 AKIPEFAY--TGSASGGEGAAQCSVCLGAVRGGEMVRRLPACKHLYHVECIDMWLASHAT 141
Query: 194 CPVCRRRVE 202
CP+CR VE
Sbjct: 142 CPLCRTEVE 150
>Os06g0539800
Length = 167
Score = 76.6 bits (187), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 37/72 (51%), Positives = 43/72 (59%), Gaps = 3/72 (4%)
Query: 131 ETLASIPAFAYDXXXXXXXXXXXXXXXVCLEALRGGETARRLPSCAHTFHVACIDMWLGS 190
+ A IP FAY VCL A++GGE RRLP+C H +HV CIDMWL S
Sbjct: 73 DVAAKIPEFAY---AGSARHGGGGECSVCLGAVQGGEAVRRLPACKHLYHVECIDMWLAS 129
Query: 191 HATCPVCRRRVE 202
HATCP+CR VE
Sbjct: 130 HATCPLCRTEVE 141
>Os02g0249200
Length = 166
Score = 75.5 bits (184), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 37/75 (49%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
Query: 127 GVSGETLASIPAFAYDXXXXXXXXXXXXXXXVCLEALRGGETARRLPSCAHTFHVACIDM 186
G++ LA+IP FAY +CL +R GE RRLP C H FHV C+DM
Sbjct: 82 GLAPSALAAIPKFAY-RRGAAGGGGGWAQCAICLGVVRDGEAVRRLPECKHLFHVECVDM 140
Query: 187 WLGSHATCPVCRRRV 201
WL SHATCP+CRR V
Sbjct: 141 WLYSHATCPLCRRDV 155
>Os06g0534900 Zinc finger, RING-type domain containing protein
Length = 412
Score = 74.3 bits (181), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 37/86 (43%), Positives = 48/86 (55%), Gaps = 7/86 (8%)
Query: 124 ARGGVSGETLASIPAFAYD-------XXXXXXXXXXXXXXXVCLEALRGGETARRLPSCA 176
A G++ + + ++PAFAY+ VCLE + GET RRLPSC
Sbjct: 109 ASCGLAAQAIDALPAFAYEPPAADVEDGGEGKPRGGGALCAVCLEDVVAGETVRRLPSCG 168
Query: 177 HTFHVACIDMWLGSHATCPVCRRRVE 202
H FHV CIDMWL +H TCP+CRR +
Sbjct: 169 HLFHVDCIDMWLHAHRTCPLCRRDLS 194
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 32/67 (47%), Positives = 39/67 (58%), Gaps = 4/67 (5%)
Query: 133 LASIPAFAYDXXXXXXXXXXXXXXXVCLEALRGGETARRLPSCAHTFHVACIDMWLGSHA 192
+ +PAFAY+ VCLE LRGGE RRLP+C H FH C+D+WL
Sbjct: 328 IGVLPAFAYEPGGGGGGVLCA----VCLEDLRGGEMVRRLPACGHLFHEDCVDVWLRVRR 383
Query: 193 TCPVCRR 199
TCP+CRR
Sbjct: 384 TCPLCRR 390
>Os02g0248280
Length = 189
Score = 73.6 bits (179), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 36/82 (43%), Positives = 46/82 (56%), Gaps = 6/82 (7%)
Query: 127 GVSGETLASIPAFAY------DXXXXXXXXXXXXXXXVCLEALRGGETARRLPSCAHTFH 180
G+ G + ++PAFAY D VCLE ++ GE R+LP+C H FH
Sbjct: 76 GLVGAAIDALPAFAYARPAADDGGGGGSKSGRCALCSVCLEDVQAGEMVRQLPACRHLFH 135
Query: 181 VACIDMWLGSHATCPVCRRRVE 202
V CIDMWL SH+TCP+CR V
Sbjct: 136 VGCIDMWLHSHSTCPLCRCNVS 157
>Os02g0249101
Length = 177
Score = 72.0 bits (175), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 36/90 (40%), Positives = 47/90 (52%), Gaps = 13/90 (14%)
Query: 126 GGVSGETLASIPAFAY-------------DXXXXXXXXXXXXXXXVCLEALRGGETARRL 172
GG+S +A++P+F Y VCL ++ GET R+L
Sbjct: 73 GGLSASAVATLPSFVYRREEWAEAAPRGDGSGSGRGGGGGWAQCAVCLSIVQEGETVRQL 132
Query: 173 PSCAHTFHVACIDMWLGSHATCPVCRRRVE 202
P+C H FHV CIDMWL SH+TCP+CR VE
Sbjct: 133 PACKHLFHVGCIDMWLHSHSTCPLCRASVE 162
>Os02g0247900
Length = 209
Score = 71.6 bits (174), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 30/45 (66%), Positives = 34/45 (75%)
Query: 158 VCLEALRGGETARRLPSCAHTFHVACIDMWLGSHATCPVCRRRVE 202
VCL +R GE A+RLP C H FH CIDMWLGSHATCP+CR V+
Sbjct: 146 VCLGEMRQGEAAKRLPVCLHVFHEECIDMWLGSHATCPICRSPVD 190
>Os12g0433100 Zinc finger, RING-type domain containing protein
Length = 212
Score = 70.9 bits (172), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 35/69 (50%), Positives = 41/69 (59%), Gaps = 2/69 (2%)
Query: 134 ASIPAFAYDXXXXXXXXXXXXXXXVCLEALRGGETARRLPSCAHTFHVACIDMWLGSHAT 193
A+IPAF Y VC+ +R GET RRLP+C H FH ACID WL +HAT
Sbjct: 135 AAIPAFEYSKGSGGAAEAEQCA--VCIGVVRRGETVRRLPACGHAFHAACIDGWLRAHAT 192
Query: 194 CPVCRRRVE 202
CPVCR V+
Sbjct: 193 CPVCRADVK 201
>Os12g0432600 Zinc finger, RING-type domain containing protein
Length = 185
Score = 70.5 bits (171), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 33/75 (44%), Positives = 43/75 (57%), Gaps = 3/75 (4%)
Query: 127 GVSGETLASIPAFAYDXXXXXXXXXXXXXXXVCLEALRGGETARRLPSCAHTFHVACIDM 186
G+S E + +IPAF Y VC+ A++ G+T RRLP+C H FH C+D
Sbjct: 97 GLSQEDIEAIPAFEY---RRGSSGSGVAQCAVCIAAVKDGDTVRRLPACGHAFHAPCVDG 153
Query: 187 WLGSHATCPVCRRRV 201
WL HATCP+CR V
Sbjct: 154 WLRDHATCPMCRADV 168
>Os01g0213200
Length = 233
Score = 70.5 bits (171), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 36/93 (38%), Positives = 47/93 (50%), Gaps = 5/93 (5%)
Query: 113 VTAAEELQGAAARGGVSGETLASIPAFAY-----DXXXXXXXXXXXXXXXVCLEALRGGE 167
V E+ + R G+ +A +P+F Y D VCL A+ GE
Sbjct: 69 VMEQEQRRPTPPRFGLDAAAIARLPSFPYVRARDDGEVSDSASSSSVECAVCLSAVDEGE 128
Query: 168 TARRLPSCAHTFHVACIDMWLGSHATCPVCRRR 200
T R+LP+C H FH CIDMWL S A+CPVCR +
Sbjct: 129 TVRQLPACGHVFHRECIDMWLSSRASCPVCRGK 161
>Os10g0544600 Fibrillarin family protein
Length = 233
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 33/75 (44%), Positives = 40/75 (53%)
Query: 127 GVSGETLASIPAFAYDXXXXXXXXXXXXXXXVCLEALRGGETARRLPSCAHTFHVACIDM 186
G+ +TL +PA VCL+ R GE ARRLPSC H FHV CID
Sbjct: 159 GLPADTLRRLPAIKITGDNAVDSAGEPICCSVCLQDFRVGEMARRLPSCRHVFHVPCIDC 218
Query: 187 WLGSHATCPVCRRRV 201
WL H +CP+CRR +
Sbjct: 219 WLVRHGSCPLCRRDI 233
>Os09g0468300 Zinc finger, RING-type domain containing protein
Length = 392
Score = 68.6 bits (166), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 35/72 (48%)
Query: 127 GVSGETLASIPAFAYDXXXXXXXXXXXXXXXVCLEALRGGETARRLPSCAHTFHVACIDM 186
G+ LA+ P AY VC+ ET R LP C+H FH CID
Sbjct: 96 GLDQSVLATFPTMAYADVKAHKSVKGALECAVCISEFDDDETLRLLPKCSHVFHQDCIDT 155
Query: 187 WLGSHATCPVCR 198
WL SHATCPVCR
Sbjct: 156 WLASHATCPVCR 167
>Os02g0743700 Similar to RING-H2 finger protein ATL1Q
Length = 220
Score = 68.6 bits (166), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 47/84 (55%), Gaps = 1/84 (1%)
Query: 118 ELQGAAARGGVSGETLASIPAFAYDXXXXXXXXXXXXXXXVCLEALRGGETARRLPSCAH 177
++ G + G+S E+L +P + +CL+ + GETARRLP+C+H
Sbjct: 138 DIFGDCSSKGLSRESLNKLPHYVV-TDQTRNSFGEDLSCTICLQDIVTGETARRLPNCSH 196
Query: 178 TFHVACIDMWLGSHATCPVCRRRV 201
TFH C+D WL H +CPVCR+ V
Sbjct: 197 TFHQPCVDKWLVGHGSCPVCRQCV 220
>Os08g0550400 Similar to RING-H2 finger protein ATL5P
Length = 260
Score = 68.2 bits (165), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 28/42 (66%), Positives = 32/42 (76%)
Query: 158 VCLEALRGGETARRLPSCAHTFHVACIDMWLGSHATCPVCRR 199
VCL+ L GE ARRLP C HTFH+ CID WL HA+CP+CRR
Sbjct: 204 VCLQDLEDGERARRLPECGHTFHLRCIDSWLLRHASCPLCRR 245
>Os02g0559800 E3 ubiquitin ligase EL5 (EC 6.3.2.-)
Length = 325
Score = 67.4 bits (163), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 27/41 (65%), Positives = 30/41 (73%)
Query: 158 VCLEALRGGETARRLPSCAHTFHVACIDMWLGSHATCPVCR 198
VCL L GE AR LP C H FH C+DMWLGSH+TCP+CR
Sbjct: 136 VCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCR 176
>Os02g0561400
Length = 314
Score = 67.4 bits (163), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 27/41 (65%), Positives = 30/41 (73%)
Query: 158 VCLEALRGGETARRLPSCAHTFHVACIDMWLGSHATCPVCR 198
VCL L GE AR LP C H FH C+DMWLGSH+TCP+CR
Sbjct: 125 VCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCR 165
>Os02g0561000
Length = 314
Score = 67.4 bits (163), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 27/41 (65%), Positives = 30/41 (73%)
Query: 158 VCLEALRGGETARRLPSCAHTFHVACIDMWLGSHATCPVCR 198
VCL L GE AR LP C H FH C+DMWLGSH+TCP+CR
Sbjct: 125 VCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCR 165
>Os02g0560600
Length = 314
Score = 67.4 bits (163), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 27/41 (65%), Positives = 30/41 (73%)
Query: 158 VCLEALRGGETARRLPSCAHTFHVACIDMWLGSHATCPVCR 198
VCL L GE AR LP C H FH C+DMWLGSH+TCP+CR
Sbjct: 125 VCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCR 165
>Os02g0560200
Length = 314
Score = 67.4 bits (163), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 27/41 (65%), Positives = 30/41 (73%)
Query: 158 VCLEALRGGETARRLPSCAHTFHVACIDMWLGSHATCPVCR 198
VCL L GE AR LP C H FH C+DMWLGSH+TCP+CR
Sbjct: 125 VCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCR 165
>Os03g0340100
Length = 200
Score = 66.6 bits (161), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 39/75 (52%)
Query: 124 ARGGVSGETLASIPAFAYDXXXXXXXXXXXXXXXVCLEALRGGETARRLPSCAHTFHVAC 183
A GG+ E L ++P + + VC+ LR G+T R LP C H FH C
Sbjct: 101 AGGGLGREDLMALPVYVHGASAAADGGAKAEECAVCIGELRDGDTGRLLPRCGHRFHAEC 160
Query: 184 IDMWLGSHATCPVCR 198
+D W SHATCP+CR
Sbjct: 161 VDKWFRSHATCPLCR 175
>Os06g0540200
Length = 127
Score = 66.6 bits (161), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/94 (40%), Positives = 47/94 (50%), Gaps = 12/94 (12%)
Query: 121 GAAARGGVSGETLASIP------AFAY------DXXXXXXXXXXXXXXXVCLEALRGGET 168
GAAA G T+A P A+AY D VCL A+R GE
Sbjct: 23 GAAAERARGGGTIAPFPVEALPPAYAYVVGSSEDGGATAASGGGGRECAVCLGAVREGEM 82
Query: 169 ARRLPSCAHTFHVACIDMWLGSHATCPVCRRRVE 202
RRLP+C H +H CID WL +H TCP+CRR ++
Sbjct: 83 VRRLPACEHVYHADCIDRWLAAHRTCPLCRRELD 116
>Os02g0248900
Length = 195
Score = 66.6 bits (161), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 28/50 (56%), Positives = 34/50 (68%)
Query: 158 VCLEALRGGETARRLPSCAHTFHVACIDMWLGSHATCPVCRRRVERKHKG 207
VCLE +RGGET R LP+C H +H ACID WL S TCP+CR + + G
Sbjct: 123 VCLEDVRGGETVRWLPACGHLYHAACIDAWLRSRTTCPLCRSDLSSRRGG 172
>Os01g0212700 Zinc finger, RING-type domain containing protein
Length = 185
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 41/76 (53%), Gaps = 3/76 (3%)
Query: 127 GVSGETLASIPAFAYDXXXXXXXXXXXXXXXVCLEALRGGETARRLPSCAHTFHVACIDM 186
G+S +A++P F Y+ VCL + GE R+LP C H FH C+D
Sbjct: 73 GMSAAAIAALPTFGYEASAAAAAALDCA---VCLGQVDAGEKVRQLPKCGHLFHAECVDA 129
Query: 187 WLGSHATCPVCRRRVE 202
WL +H+TCP+CR VE
Sbjct: 130 WLRAHSTCPMCRAAVE 145
>Os01g0755700 Zinc finger, RING-type domain containing protein
Length = 238
Score = 65.9 bits (159), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 41/76 (53%)
Query: 127 GVSGETLASIPAFAYDXXXXXXXXXXXXXXXVCLEALRGGETARRLPSCAHTFHVACIDM 186
G+ +A++P AY +CL A++ + R LP+C H FHVACID
Sbjct: 88 GLDPSAIAALPTAAYGKVAGGDAAGGTTECAICLGAMQEADAVRVLPACRHVFHVACIDK 147
Query: 187 WLGSHATCPVCRRRVE 202
WL S ++CPVCR VE
Sbjct: 148 WLASSSSCPVCRAGVE 163
>Os06g0536100
Length = 190
Score = 65.5 bits (158), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 39/71 (54%), Gaps = 5/71 (7%)
Query: 137 PAFAY-----DXXXXXXXXXXXXXXXVCLEALRGGETARRLPSCAHTFHVACIDMWLGSH 191
PA+AY D VCL A+R GE RRLP+C H +H CID WL +H
Sbjct: 95 PAYAYVVGSSDDGGATAASGVGRECAVCLGAVREGEMVRRLPACEHVYHADCIDRWLAAH 154
Query: 192 ATCPVCRRRVE 202
TCP+CRR ++
Sbjct: 155 RTCPLCRRELD 165
>Os06g0536600
Length = 239
Score = 65.1 bits (157), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 26/45 (57%), Positives = 33/45 (73%)
Query: 158 VCLEALRGGETARRLPSCAHTFHVACIDMWLGSHATCPVCRRRVE 202
VCL A+R GE RRLP+C H +H CID WL +H TCP+CRR ++
Sbjct: 184 VCLGAVREGEMVRRLPACEHVYHADCIDRWLAAHRTCPLCRRELD 228
>Os02g0832150 Zinc finger, RING-type domain containing protein
Length = 217
Score = 65.1 bits (157), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 27/44 (61%), Positives = 30/44 (68%)
Query: 158 VCLEALRGGETARRLPSCAHTFHVACIDMWLGSHATCPVCRRRV 201
+CL GGE R LP C H FHV+CID WLG+HATCP CR V
Sbjct: 134 ICLAEFAGGEELRLLPHCGHAFHVSCIDTWLGTHATCPSCRATV 177
>Os09g0542600 Similar to RING-H2 finger protein ATL1I
Length = 217
Score = 65.1 bits (157), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 26/45 (57%), Positives = 31/45 (68%)
Query: 158 VCLEALRGGETARRLPSCAHTFHVACIDMWLGSHATCPVCRRRVE 202
+CL + GE ARRLP+C H FH+ CID WL HA CP+CRR V
Sbjct: 173 ICLHDFKAGEIARRLPACCHIFHLGCIDNWLLWHALCPMCRRPVN 217
>Os02g0248320 Zinc finger, RING-type domain containing protein
Length = 222
Score = 65.1 bits (157), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 28/44 (63%), Positives = 32/44 (72%)
Query: 158 VCLEALRGGETARRLPSCAHTFHVACIDMWLGSHATCPVCRRRV 201
VCLE + GET RRLP+C H FH C+DMWL SH TCP+CR V
Sbjct: 146 VCLEDVARGETVRRLPACGHLFHRDCVDMWLHSHTTCPLCRCEV 189
>Os06g0537600 Zinc finger, RING-type domain containing protein
Length = 150
Score = 64.7 bits (156), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 41/75 (54%), Gaps = 1/75 (1%)
Query: 134 ASIPAFAYDXXXXXXXXXXX-XXXXVCLEALRGGETARRLPSCAHTFHVACIDMWLGSHA 192
+ +PAF YD VCL + G + LP+CAH +HV CID+WL SH
Sbjct: 63 SGLPAFMYDRLVRHSGKGASWTECAVCLGVIHVGAMVKLLPACAHIYHVDCIDLWLSSHP 122
Query: 193 TCPVCRRRVERKHKG 207
TCP+CR RV+ +G
Sbjct: 123 TCPLCRCRVDHPGQG 137
>Os01g0213100
Length = 231
Score = 63.9 bits (154), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 41/75 (54%), Gaps = 3/75 (4%)
Query: 127 GVSGETLASIPAFAYDXXXXXXXXXXXXXXXVCLEALRGGETARRLPSCAHTFHVACIDM 186
G+ + +A++P F Y +CL A+ GE AR+LP C H FH C+DM
Sbjct: 117 GLGEDAIAALPKFEY---RGTGDECDRWECSICLCAVADGEVARQLPRCMHLFHRGCVDM 173
Query: 187 WLGSHATCPVCRRRV 201
WL +H TCPVCR V
Sbjct: 174 WLVAHTTCPVCRAEV 188
>Os07g0146300
Length = 209
Score = 63.9 bits (154), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 26/44 (59%), Positives = 31/44 (70%)
Query: 158 VCLEALRGGETARRLPSCAHTFHVACIDMWLGSHATCPVCRRRV 201
VCL L G+ AR LP C H FH C+DMW+GSH+TCP+CR V
Sbjct: 110 VCLAELEEGDEARFLPRCGHGFHAECVDMWVGSHSTCPLCRLTV 153
>Os03g0391100
Length = 417
Score = 63.9 bits (154), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
Query: 125 RGGVSGETLASIPAFAYDXXXXXXXXXXXXXXXVCL-EALRGGETARRLPSCAHTFHVAC 183
R G+ + ++P Y VCL E GGE R LP C H FH AC
Sbjct: 121 RAGLDVAAMEALPVLTYATARAVKAGRGALECAVCLAEFADGGEKLRLLPGCCHVFHAAC 180
Query: 184 IDMWLGSHATCPVCR 198
ID+WL +H TCPVCR
Sbjct: 181 IDVWLAAHVTCPVCR 195
>Os08g0484200 Zinc finger, RING-type domain containing protein
Length = 413
Score = 63.9 bits (154), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 33/72 (45%)
Query: 127 GVSGETLASIPAFAYDXXXXXXXXXXXXXXXVCLEALRGGETARRLPSCAHTFHVACIDM 186
G+ L + P AY VCL ET R LP C+H FH CID
Sbjct: 116 GLDPAVLGAFPTMAYADVKAHKAGKGALECAVCLSEFDDDETLRLLPRCSHAFHADCIDA 175
Query: 187 WLGSHATCPVCR 198
WL SH TCPVCR
Sbjct: 176 WLASHVTCPVCR 187
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.324 0.133 0.426
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,767,055
Number of extensions: 136900
Number of successful extensions: 854
Number of sequences better than 1.0e-10: 49
Number of HSP's gapped: 871
Number of HSP's successfully gapped: 50
Length of query: 223
Length of database: 17,035,801
Length adjustment: 97
Effective length of query: 126
Effective length of database: 11,971,043
Effective search space: 1508351418
Effective search space used: 1508351418
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 154 (63.9 bits)