Os06g0537600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Zinc finger, RING-type domain containing protein.
FiT-DB / Search/ Help/ Sample detail
|
Os06g0537600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Zinc finger, RING-type domain containing protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 233.87 | 0.719 | 3.77 | -2.71 | 0.418 | -1.85 | -0.815 | 6.41 | 0.316 | 18.8 | 30 | 1221 | -- | -- |
| 236.98 | 0.717 | 3.63 | -1.45 | 0.436 | -1.16 | -0.777 | -- | 0.307 | 18.9 | 29.7 | 1218 | -- | -- |
| 235.4 | 0.715 | 3.77 | -2.7 | 0.412 | -1.86 | -- | 6.5 | 0.311 | 19.2 | 30 | 1219 | -- | -- |
| 238.6 | 0.719 | 3.64 | -1.44 | 0.437 | -1.16 | -- | -- | 0.296 | 19.3 | 29.7 | 1220 | -- | -- |
| 237.93 | 0.718 | 3.76 | -2.79 | -- | -2.42 | -- | 7.88 | 0.254 | -- | 29.9 | 2211 | -- | -- |
| 301.71 | 0.814 | 3.65 | -1.09 | 0.493 | -- | -0.34 | -- | 0.26 | 20.6 | -- | -- | -- | -- |
| 302.01 | 0.814 | 3.65 | -1.08 | 0.491 | -- | -- | -- | 0.259 | 20.9 | -- | -- | -- | -- |
| 245.69 | 0.73 | 3.62 | -1.45 | -- | -1.5 | -- | -- | 0.346 | -- | 29.78 | 2187 | -- | -- |
| 290.53 | 0.794 | 3.61 | -- | 0.431 | -0.92 | -- | -- | 0.425 | 19.4 | 29.7 | 1205 | -- | -- |
| 315.78 | 0.83 | 3.63 | -1.08 | -- | -- | -- | -- | 0.255 | -- | -- | -- | -- | -- |
| 332.87 | 0.853 | 3.62 | -- | 0.494 | -- | -- | -- | 0.379 | 20.7 | -- | -- | -- | -- |
| 294.93 | 0.8 | 3.57 | -- | -- | -1.23 | -- | -- | 0.554 | -- | 30.5 | 866 | -- | -- |
| 346.68 | 0.869 | 3.61 | -- | -- | -- | -- | -- | 0.376 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 232.51 | temperature | 20 | 270 | > th | dose dependent | rect. | 13 | 20 |
| 2 | 233.25 | temperature | 30 | 720 | < th | dose independent | rect. | 14 | 16 |
| 4 | 233.37 | wind | 7 | 43200 | > th | dose dependent | rect. | 11 | 22 |
| 5 | 233.47 | wind | 7 | 43200 | > th | dose independent | rect. | 18 | 22 |
| 7 | 233.57 | wind | 7 | 43200 | < th | dose independent | rect. | 18 | 22 |
| 16 | 233.74 | wind | 7 | 43200 | > th | dose dependent | rect. | 9 | 22 |
| 20 | 233.83 | wind | 7 | 43200 | > th | dose dependent | rect. | 9 | 20 |
| 29 | 234.05 | wind | 7 | 43200 | > th | dose independent | rect. | 15 | 23 |
| 39 | 234.22 | wind | 7 | 43200 | < th | dose independent | rect. | 15 | 23 |
| 51 | 234.33 | wind | 7 | 43200 | > th | dose independent | rect. | 6 | 23 |
| 52 | 234.34 | wind | 7 | 43200 | > th | dose independent | no | NA | NA |
| 53 | 234.34 | wind | 7 | 43200 | > th | dose independent | rect. | 2 | 23 |
| 59 | 234.35 | wind | 7 | 43200 | > th | dose dependent | rect. | 17 | 23 |
| 68 | 234.41 | wind | 7 | 43200 | > th | dose dependent | rect. | 24 | 23 |
| 71 | 234.43 | wind | 7 | 43200 | > th | dose dependent | rect. | 19 | 23 |
| 74 | 234.45 | wind | 7 | 43200 | > th | dose independent | rect. | 23 | 23 |
| 76 | 234.47 | wind | 7 | 43200 | < th | dose independent | no | NA | NA |
| 78 | 234.47 | wind | 7 | 43200 | < th | dose independent | rect. | 2 | 23 |
| 79 | 234.47 | wind | 7 | 43200 | > th | dose dependent | rect. | 3 | 20 |
| 83 | 234.49 | wind | 7 | 43200 | > th | dose independent | rect. | 4 | 23 |
| 85 | 234.49 | wind | 7 | 43200 | < th | dose independent | rect. | 6 | 23 |
| 87 | 234.52 | wind | 9 | 43200 | > th | dose dependent | rect. | 13 | 18 |
| 90 | 234.54 | wind | 7 | 43200 | > th | dose dependent | rect. | 3 | 23 |
| 93 | 234.56 | wind | 7 | 43200 | > th | dose dependent | no | NA | NA |
| 97 | 234.57 | wind | 7 | 43200 | > th | dose independent | rect. | 8 | 23 |
| 98 | 234.57 | wind | 7 | 43200 | < th | dose independent | rect. | 23 | 23 |
| 111 | 234.62 | wind | 7 | 43200 | < th | dose independent | rect. | 4 | 23 |
| 136 | 234.70 | wind | 7 | 43200 | < th | dose independent | rect. | 8 | 23 |
| 139 | 234.71 | wind | 9 | 43200 | < th | dose independent | rect. | 13 | 19 |
| 190 | 234.91 | wind | 9 | 43200 | > th | dose independent | rect. | 13 | 19 |
| 199 | 234.95 | temperature | 30 | 720 | > th | dose independent | rect. | 14 | 19 |
| 200 | 234.95 | wind | 9 | 43200 | < th | dose independent | rect. | 12 | 21 |
| 242 | 235.13 | wind | 7 | 43200 | > th | dose independent | sin | 3 | NA |
| 254 | 235.20 | wind | 7 | 43200 | > th | dose dependent | sin | 21 | NA |
| 269 | 235.27 | wind | 7 | 43200 | < th | dose independent | sin | 3 | NA |
| 285 | 235.35 | wind | 5 | 43200 | > th | dose dependent | rect. | 22 | 19 |
| 376 | 235.71 | temperature | 30 | 720 | > th | dose independent | rect. | 14 | 5 |
| 431 | 235.86 | wind | 9 | 43200 | > th | dose dependent | sin | 15 | NA |
| 446 | 235.91 | wind | 5 | 43200 | > th | dose dependent | sin | 2 | NA |
| 468 | 236.01 | wind | 9 | 43200 | < th | dose independent | rect. | 8 | 15 |
| 476 | 236.03 | wind | 9 | 43200 | > th | dose independent | sin | 14 | NA |
| 540 | 236.25 | wind | 9 | 43200 | < th | dose independent | sin | 14 | NA |
| 631 | 236.52 | wind | 7 | 43200 | > th | dose independent | rect. | 6 | 10 |
| 639 | 236.55 | wind | 7 | 43200 | < th | dose independent | rect. | 6 | 10 |
| 669 | 236.63 | wind | 7 | 43200 | > th | dose dependent | rect. | 8 | 10 |
| 806 | 237.09 | temperature | 25 | 4320 | > th | dose dependent | rect. | 8 | 1 |
| 844 | 237.25 | temperature | 30 | 1440 | < th | dose independent | rect. | 15 | 20 |
| 859 | 237.32 | temperature | 25 | 4320 | > th | dose dependent | rect. | 6 | 3 |
| 918 | 237.64 | wind | 9 | 43200 | < th | dose independent | sin | 21 | NA |